# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh04326.fasta.nr -Q ../query/FLJ00360.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00360, 137 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827333 sequences Expectation_n fit: rho(ln(x))= 4.5116+/-0.000181; mu= 9.9207+/- 0.010 mean_var=60.2490+/-11.870, 0's: 30 Z-trim: 31 B-trim: 3117 in 1/66 Lambda= 0.165234 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748568|dbj|BAC03421.1| FLJ00360 protein [Homo ( 137) 961 236.5 9.7e-61 gi|119596027|gb|EAW75621.1| chromosome 20 open rea ( 896) 446 114.4 3.6e-23 gi|152031578|sp|Q96MK2.4|FA65C_HUMAN RecName: Full ( 946) 446 114.4 3.7e-23 gi|221042658|dbj|BAH13006.1| unnamed protein produ ( 950) 446 114.4 3.7e-23 gi|114682613|ref|XP_001167914.1| PREDICTED: hypoth ( 946) 441 113.2 8.5e-23 gi|149734112|ref|XP_001487965.1| PREDICTED: simila ( 947) 387 100.3 6.3e-19 gi|119906104|ref|XP_594815.3| PREDICTED: similar t ( 947) 383 99.4 1.2e-18 gi|194044741|ref|XP_001929509.1| PREDICTED: simila ( 947) 369 96.0 1.2e-17 gi|109469273|ref|XP_001067179.1| PREDICTED: hypoth ( 273) 350 91.1 1.1e-16 gi|148674586|gb|EDL06533.1| mCG131887 [Mus musculu ( 741) 343 89.8 7.6e-16 gi|221272001|sp|A1L3T7.1|FA65C_MOUSE RecName: Full ( 938) 343 89.8 9.1e-16 gi|126303272|ref|XP_001378673.1| PREDICTED: hypoth (1110) 292 77.7 4.7e-12 gi|118100911|ref|XP_425727.2| PREDICTED: hypotheti ( 979) 236 64.4 4.5e-08 >>gi|21748568|dbj|BAC03421.1| FLJ00360 protein [Homo sap (137 aa) initn: 961 init1: 961 opt: 961 Z-score: 1246.7 bits: 236.5 E(): 9.7e-61 Smith-Waterman score: 961; 100.000% identity (100.000% similar) in 137 aa overlap (1-137:1-137) 10 20 30 40 50 60 FLJ003 SSRWVWDLFLCGYWQQPSKLAAVLPNSHSGDLGPPLSCLLVTLIEELHCAGQAKVVRKLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 SSRWVWDLFLCGYWQQPSKLAAVLPNSHSGDLGPPLSCLLVTLIEELHCAGQAKVVRKLQ 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 GKRLGQLQPLPQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFREKVRCPGQVADPGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 GKRLGQLQPLPQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFREKVRCPGQVADPGH 70 80 90 100 110 120 130 FLJ003 RCVGIGKLVFSWKSTKK ::::::::::::::::: gi|217 RCVGIGKLVFSWKSTKK 130 >>gi|119596027|gb|EAW75621.1| chromosome 20 open reading (896 aa) initn: 446 init1: 446 opt: 446 Z-score: 572.3 bits: 114.4 E(): 3.6e-23 Smith-Waterman score: 446; 100.000% identity (100.000% similar) in 68 aa overlap (41-108:738-805) 20 30 40 50 60 70 FLJ003 CGYWQQPSKLAAVLPNSHSGDLGPPLSCLLVTLIEELHCAGQAKVVRKLQGKRLGQLQPL :::::::::::::::::::::::::::::: gi|119 QIITWFQFHSYLQRQSVSDLEKHFTQLTKEVTLIEELHCAGQAKVVRKLQGKRLGQLQPL 710 720 730 740 750 760 80 90 100 110 120 130 FLJ003 PQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFREKVRCPGQVADPGHRCVGIGKLVF :::::::::::::::::::::::::::::::::::::: gi|119 PQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFREKALLFYTNALAENDARLQQAACL 770 780 790 800 810 820 FLJ003 SWKSTKK gi|119 ALKHLKGIESIDQTASLCQSDLEAVRAAARETTLSFGEKGRLAFEKMDKLCSEQREVFCQ 830 840 850 860 870 880 >>gi|152031578|sp|Q96MK2.4|FA65C_HUMAN RecName: Full=Pro (946 aa) initn: 446 init1: 446 opt: 446 Z-score: 572.0 bits: 114.4 E(): 3.7e-23 Smith-Waterman score: 446; 100.000% identity (100.000% similar) in 68 aa overlap (41-108:788-855) 20 30 40 50 60 70 FLJ003 CGYWQQPSKLAAVLPNSHSGDLGPPLSCLLVTLIEELHCAGQAKVVRKLQGKRLGQLQPL :::::::::::::::::::::::::::::: gi|152 QIITWFQFHSYLQRQSVSDLEKHFTQLTKEVTLIEELHCAGQAKVVRKLQGKRLGQLQPL 760 770 780 790 800 810 80 90 100 110 120 130 FLJ003 PQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFREKVRCPGQVADPGHRCVGIGKLVF :::::::::::::::::::::::::::::::::::::: gi|152 PQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFREKALLFYTNALAENDARLQQAACL 820 830 840 850 860 870 FLJ003 SWKSTKK gi|152 ALKHLKGIESIDQTASLCQSDLEAVRAAARETTLSFGEKGRLAFEKMDKLCSEQREVFCQ 880 890 900 910 920 930 >>gi|221042658|dbj|BAH13006.1| unnamed protein product [ (950 aa) initn: 446 init1: 446 opt: 446 Z-score: 572.0 bits: 114.4 E(): 3.7e-23 Smith-Waterman score: 446; 100.000% identity (100.000% similar) in 68 aa overlap (41-108:792-859) 20 30 40 50 60 70 FLJ003 CGYWQQPSKLAAVLPNSHSGDLGPPLSCLLVTLIEELHCAGQAKVVRKLQGKRLGQLQPL :::::::::::::::::::::::::::::: gi|221 QIITWFQFHSYLQRQSVSDLEKHFTQLTKEVTLIEELHCAGQAKVVRKLQGKRLGQLQPL 770 780 790 800 810 820 80 90 100 110 120 130 FLJ003 PQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFREKVRCPGQVADPGHRCVGIGKLVF :::::::::::::::::::::::::::::::::::::: gi|221 PQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFREKALLFYTNALAENDARLQQAACL 830 840 850 860 870 880 FLJ003 SWKSTKK gi|221 ALKHLKGIESTDQTASLCQSDLEAVRAAARETTLSFGEKGRLAFEKMDKLCSEQREVFCQ 890 900 910 920 930 940 >>gi|114682613|ref|XP_001167914.1| PREDICTED: hypothetic (946 aa) initn: 441 init1: 441 opt: 441 Z-score: 565.5 bits: 113.2 E(): 8.5e-23 Smith-Waterman score: 441; 98.529% identity (100.000% similar) in 68 aa overlap (41-108:788-855) 20 30 40 50 60 70 FLJ003 CGYWQQPSKLAAVLPNSHSGDLGPPLSCLLVTLIEELHCAGQAKVVRKLQGKRLGQLQPL ::::::::::::::.::::::::::::::: gi|114 QIITWFQFHGYLQRQSVSDLEKHFTQLTKEVTLIEELHCAGQAKAVRKLQGKRLGQLQPL 760 770 780 790 800 810 80 90 100 110 120 130 FLJ003 PQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFREKVRCPGQVADPGHRCVGIGKLVF :::::::::::::::::::::::::::::::::::::: gi|114 PQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFREKALLFYTNALAENDARLQQAACL 820 830 840 850 860 870 FLJ003 SWKSTKK gi|114 ALKHLKGIESIDQIASLCQSDLEAVRAAARETTLSFGEKGRLAFEKMDKLCSEQREVFCQ 880 890 900 910 920 930 >>gi|149734112|ref|XP_001487965.1| PREDICTED: similar to (947 aa) initn: 387 init1: 387 opt: 387 Z-score: 496.0 bits: 100.3 E(): 6.3e-19 Smith-Waterman score: 387; 83.824% identity (98.529% similar) in 68 aa overlap (41-108:788-855) 20 30 40 50 60 70 FLJ003 CGYWQQPSKLAAVLPNSHSGDLGPPLSCLLVTLIEELHCAGQAKVVRKLQGKRLGQLQPL :::.:::.:.::.:..:::::::: ::::: gi|149 QTVTWFQFHSYLQRQSVADLEKHFAQLTKEVTLVEELQCTGQVKTLRKLQGKRLDQLQPL 760 770 780 790 800 810 80 90 100 110 120 130 FLJ003 PQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFREKVRCPGQVADPGHRCVGIGKLVF :::::::::::::::::::::::::::.:..:.::::: gi|149 PQTLRAWALLQLDGTPRVCRAASARLASAAKNKSFREKALLYYTAALAEDDAKLQQAACV 820 830 840 850 860 870 FLJ003 SWKSTKK gi|149 ALKHLRGIESIDQIASLCQCEREAVRAAAREATLSFGEKGRLAFEKMDKLRSEQREAAFC 880 890 900 910 920 930 >>gi|119906104|ref|XP_594815.3| PREDICTED: similar to C2 (947 aa) initn: 383 init1: 383 opt: 383 Z-score: 490.8 bits: 99.4 E(): 1.2e-18 Smith-Waterman score: 383; 83.824% identity (95.588% similar) in 68 aa overlap (41-108:788-855) 20 30 40 50 60 70 FLJ003 CGYWQQPSKLAAVLPNSHSGDLGPPLSCLLVTLIEELHCAGQAKVVRKLQGKRLGQLQPL ::: :::.: .:...::::::::::::::: gi|119 QTITWFQFHSYLRRQSVSDLEKHFAQLTKEVTLAEELQCRAQTRTVRKLQGKRLGQLQPL 760 770 780 790 800 810 80 90 100 110 120 130 FLJ003 PQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFREKVRCPGQVADPGHRCVGIGKLVF :::::::::::::: ::.:::::::::::.::.::::: gi|119 PQTLRAWALLQLDGPPRACRAASARLAGAARNKSFREKALLFYTNALTENDAKLQQAACV 820 830 840 850 860 870 FLJ003 SWKSTKK gi|119 ALRHLRGVESIDQIASLCQSDVEAVRAAARETTLSFGEKGRLAFEKMDRLCSEQRDAAFG 880 890 900 910 920 930 >>gi|194044741|ref|XP_001929509.1| PREDICTED: similar to (947 aa) initn: 369 init1: 369 opt: 369 Z-score: 472.8 bits: 96.0 E(): 1.2e-17 Smith-Waterman score: 369; 85.294% identity (95.588% similar) in 68 aa overlap (41-108:788-855) 20 30 40 50 60 70 FLJ003 CGYWQQPSKLAAVLPNSHSGDLGPPLSCLLVTLIEELHCAGQAKVVRKLQGKRLGQLQPL ::: :::. .::::.::::::::::::::: gi|194 QTVTWFQFHSYLRRQSVSDLEKHFAQLTKEVTLAEELQGVGQAKTVRKLQGKRLGQLQPL 760 770 780 790 800 810 80 90 100 110 120 130 FLJ003 PQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFREKVRCPGQVADPGHRCVGIGKLVF :::::::::::::::::: ::::.:::.:.::.::::: gi|194 PQTLRAWALLQLDGTPRVSRAASTRLASAARNKSFREKALLFYTNALTENDAKLQQAACM 820 830 840 850 860 870 FLJ003 SWKSTKK gi|194 ALKHLRGIESIDQIASLCQSNLEAVRAAARETTLSFGEKGRLAFEKMDKLCSEQREGGFG 880 890 900 910 920 930 >>gi|109469273|ref|XP_001067179.1| PREDICTED: hypothetic (273 aa) initn: 347 init1: 347 opt: 350 Z-score: 455.5 bits: 91.1 E(): 1.1e-16 Smith-Waterman score: 350; 61.957% identity (80.435% similar) in 92 aa overlap (19-108:121-212) 10 20 30 40 FLJ003 SSRWVWDLFLCGYWQQPSKLAAVLPNSHSGDLGPPLSCLL--VTLIEE .. . : .. .:: :. : :::::: gi|109 VCRRLLEQVLGCGGLFVTAGLQDEQVVTWFQFHSYLQRQNISDLEKHLTQLTKEVTLIEE 100 110 120 130 140 150 50 60 70 80 90 100 FLJ003 LHCAGQAKVVRKLQGKRLGQLQPLPQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFR :.::: ::..:::.::::.:::::::::.::: ::::: ::.:::: :::.:.::. :: gi|109 LNCAGPAKALRKLHGKRLSQLQPLPQTLQAWARLQLDGPPRLCRAARMRLASAARNKRFR 160 170 180 190 200 210 110 120 130 FLJ003 EKVRCPGQVADPGHRCVGIGKLVFSWKSTKK :: gi|109 EKALLYYTNALNDSDSKLQQAACMALQQLGGVESIEQIVSLCQSDLEAVRAAAREATLSF 220 230 240 250 260 270 >>gi|148674586|gb|EDL06533.1| mCG131887 [Mus musculus] (741 aa) initn: 343 init1: 343 opt: 343 Z-score: 440.7 bits: 89.8 E(): 7.6e-16 Smith-Waterman score: 343; 76.471% identity (91.176% similar) in 68 aa overlap (41-108:584-651) 20 30 40 50 60 70 FLJ003 CGYWQQPSKLAAVLPNSHSGDLGPPLSCLLVTLIEELHCAGQAKVVRKLQGKRLGQLQPL ::::::: ::: ::..:::.:: :.::::: gi|148 QVVTWFQFHSYLQRQSISDLEKHLAQLTKEVTLIEELSCAGPAKALRKLHGKCLSQLQPL 560 570 580 590 600 610 80 90 100 110 120 130 FLJ003 PQTLRAWALLQLDGTPRVCRAASARLAGAVRNRSFREKVRCPGQVADPGHRCVGIGKLVF ::::.::::::::: ::.:::: .:::.:.::. :::: gi|148 PQTLQAWALLQLDGPPRLCRAARTRLASAARNKRFREKALLYYTNALNDSDAKVQQAACV 620 630 640 650 660 670 FLJ003 SWKSTKK gi|148 ALQQLGGIESCEQIVSLCQSDLEAVRVAAREATLSFGEKGRLAFEKMDKLHSEQEAFCQE 680 690 700 710 720 730 137 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 21:14:48 2009 done: Fri Feb 27 21:18:46 2009 Total Scan time: 571.710 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]