# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh04352.fasta.nr -Q ../query/FLJ00361.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00361, 366 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7808755 sequences Expectation_n fit: rho(ln(x))= 6.1184+/-0.000211; mu= 7.4830+/- 0.012 mean_var=149.6484+/-28.852, 0's: 28 Z-trim: 74 B-trim: 447 in 1/66 Lambda= 0.104843 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748570|dbj|BAC03422.1| FLJ00361 protein [Homo ( 366) 2616 407.0 3.3e-111 gi|220675443|emb|CAM28211.2| zinc finger CCCH-type ( 527) 918 150.3 8.5e-34 gi|205831228|sp|A2A288.2|ZC12D_HUMAN RecName: Full ( 527) 913 149.6 1.4e-33 gi|119568186|gb|EAW47801.1| hCG1749747, isoform CR ( 673) 912 149.5 1.9e-33 gi|114609790|ref|XP_518794.2| PREDICTED: zinc fing ( 527) 873 143.5 9.5e-32 gi|109072444|ref|XP_001087043.1| PREDICTED: simila ( 526) 830 137.0 8.7e-30 gi|194670042|ref|XP_872877.3| PREDICTED: similar t ( 659) 492 86.0 2.5e-14 gi|149039531|gb|EDL93693.1| similar to zinc finger ( 533) 367 67.0 1.1e-08 gi|26342995|dbj|BAC35154.1| unnamed protein produc ( 430) 346 63.7 8.3e-08 gi|133777343|gb|AAI12399.1| Zinc finger CCCH type ( 430) 346 63.7 8.3e-08 gi|205831229|sp|Q8BIY3.2|ZC12D_MOUSE RecName: Full ( 533) 346 63.8 9.5e-08 gi|148671590|gb|EDL03537.1| zinc finger CCCH type ( 533) 346 63.8 9.5e-08 gi|126308289|ref|XP_001367735.1| PREDICTED: simila (1455) 286 55.2 9.8e-05 gi|126308291|ref|XP_001367777.1| PREDICTED: simila (1462) 286 55.2 9.8e-05 gi|126324047|ref|XP_001367172.1| PREDICTED: simila ( 412) 277 53.2 0.00011 gi|20380522|gb|AAH28248.1| Col3a1 protein [Mus mus (1222) 279 54.1 0.00018 gi|26334217|dbj|BAC30826.1| unnamed protein produc (1464) 279 54.2 0.0002 gi|74184771|dbj|BAE27985.1| unnamed protein produc (1464) 279 54.2 0.0002 gi|5921190|sp|P08121.4|CO3A1_MOUSE RecName: Full=C (1464) 279 54.2 0.0002 gi|30851550|gb|AAH52398.1| Collagen, type III, alp (1464) 279 54.2 0.0002 gi|154162726|gb|ABS69942.1| SH3 type 3 domain prot ( 589) 271 52.5 0.00026 gi|208609645|dbj|BAG72200.1| collagen type I alpha (1448) 275 53.6 0.00031 gi|83301554|sp|P02454.4|CO1A1_RAT RecName: Full=Co (1453) 274 53.4 0.00034 gi|161436|gb|AAA30035.1| alpha-1 collagen gi|4 (1414) 273 53.3 0.00038 gi|194222400|ref|XP_001917655.1| PREDICTED: collag (1466) 272 53.1 0.00043 gi|470674|gb|AAA88912.1| collagen pro-alpha-1 type (1453) 271 53.0 0.00047 gi|83301500|sp|P11087.4|CO1A1_MOUSE RecName: Full= (1453) 271 53.0 0.00047 gi|26339398|dbj|BAC33370.1| unnamed protein produc (1464) 271 53.0 0.00047 gi|158332060|dbj|BAF89545.1| conserved hypothetica ( 664) 266 51.8 0.00048 gi|219954528|gb|ACL64912.1| response regulator rec ( 476) 260 50.7 0.00073 gi|85774498|gb|ABC81335.1| DNA-binding protein Fis ( 526) 258 50.5 0.00096 gi|158108439|gb|ABW10636.1| translation initiation (1046) 262 51.4 0.00098 gi|194227934|ref|XP_001917939.1| PREDICTED: hypoth ( 665) 259 50.8 0.001 gi|73964855|ref|XP_861600.1| PREDICTED: hypothetic ( 369) 254 49.7 0.0012 gi|114582198|ref|XP_001163483.1| PREDICTED: simila (1162) 261 51.3 0.0012 gi|194135597|gb|ACF33478.1| triblock protein copol ( 469) 255 50.0 0.0012 gi|114582182|ref|XP_001163292.1| PREDICTED: simila (1408) 261 51.4 0.0013 gi|114582192|ref|XP_001163769.1| PREDICTED: simila (1412) 261 51.4 0.0013 gi|114582194|ref|XP_001163731.1| PREDICTED: simila (1439) 261 51.5 0.0013 gi|180392|gb|AAA51995.1| alpha 1 (I) chain propept (1040) 259 51.0 0.0013 gi|114582180|ref|XP_515975.2| PREDICTED: similar t (1457) 261 51.5 0.0013 gi|114582184|ref|XP_001163598.1| PREDICTED: simila (1457) 261 51.5 0.0013 gi|114582188|ref|XP_001163443.1| PREDICTED: simila (1457) 261 51.5 0.0013 gi|30058|emb|CAA32583.1| prepro-alpha-1 type 3 col (1466) 261 51.5 0.0014 gi|124056490|sp|P02461.4|CO3A1_HUMAN RecName: Full (1466) 261 51.5 0.0014 gi|3513512|gb|AAC33847.1| nongradient byssal precu ( 904) 258 50.8 0.0014 gi|1888409|emb|CAA67261.1| collagen type I alpha 1 (1069) 257 50.7 0.0017 gi|86167121|gb|EAQ68382.1| translation initiation (1103) 257 50.7 0.0017 gi|194135601|gb|ACF33480.1| triblock protein copol ( 865) 255 50.3 0.0018 gi|149411035|ref|XP_001514923.1| PREDICTED: simila ( 389) 249 49.0 0.002 >>gi|21748570|dbj|BAC03422.1| FLJ00361 protein [Homo sap (366 aa) initn: 2616 init1: 2616 opt: 2616 Z-score: 2152.8 bits: 407.0 E(): 3.3e-111 Smith-Waterman score: 2616; 100.000% identity (100.000% similar) in 366 aa overlap (1-366:1-366) 10 20 30 40 50 60 FLJ003 SLVKGTWERHSSAYPGMSVLSAPAPRPPAPPGHFSPPRPRAQILRRFQGAESEESAAAWG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 SLVKGTWERHSSAYPGMSVLSAPAPRPPAPPGHFSPPRPRAQILRRFQGAESEESAAAWG 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 PAWRNLHGEAAGRHSPDAPGTTAPPRPRASRRALSAPAPFRQEMHLWHQVQVLPPGEAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 PAWRNLHGEAAGRHSPDAPGTTAPPRPRASRRALSAPAPFRQEMHLWHQVQVLPPGEAAP 70 80 90 100 110 120 130 140 150 160 170 180 FLJ003 RATGGGRRAPRQDRGPAWRGRRGAAATESPGRFRRSPGGPPGTICAQPPAGAGVPGPGRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 RATGGGRRAPRQDRGPAWRGRRGAAATESPGRFRRSPGGPPGTICAQPPAGAGVPGPGRP 130 140 150 160 170 180 190 200 210 220 230 240 FLJ003 ARELLSVGLQRRPGAPGAASPGPRLQPHAPTGRARLGVRGPAGCQARSASVARRANSPRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 ARELLSVGLQRRPGAPGAASPGPRLQPHAPTGRARLGVRGPAGCQARSASVARRANSPRA 190 200 210 220 230 240 250 260 270 280 290 300 FLJ003 TSRLRPGLQLQPRGEHRPRDLHGDLLSPRRPPDDPWARPPRSDRFPGRSVWAEPAWGDGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 TSRLRPGLQLQPRGEHRPRDLHGDLLSPRRPPDDPWARPPRSDRFPGRSVWAEPAWGDGA 250 260 270 280 290 300 310 320 330 340 350 360 FLJ003 TGGLSVYATEDDEGDARARARIALYSVFPRDQVDRVMAAFPELSDLARLILLVQRCQSAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 TGGLSVYATEDDEGDARARARIALYSVFPRDQVDRVMAAFPELSDLARLILLVQRCQSAG 310 320 330 340 350 360 FLJ003 APLGKP :::::: gi|217 APLGKP >>gi|220675443|emb|CAM28211.2| zinc finger CCCH-type con (527 aa) initn: 930 init1: 862 opt: 918 Z-score: 763.0 bits: 150.3 E(): 8.5e-34 Smith-Waterman score: 918; 65.106% identity (73.191% similar) in 235 aa overlap (141-366:298-527) 120 130 140 150 160 FLJ003 QVLPPGEAAPRATGGGRRAPRQDRGPAWRGRRGAAATESPGRFRRSPGGPPGTICA--QP : ::.: :. : :.::: :. : .: gi|220 YGIKCKFYHPERPHHAQLAVADELRAKTGARPGAGAEEQ--RPPRAPGGSAGARAAPREP 270 280 290 300 310 320 170 180 190 200 210 220 FLJ003 PAGAGVPGPGRPARELLSVGLQRRPGAPGAASPGPRLQPHAPTGRARLGVRGPAGCQARS : . :. : : : ...: . . :: : : . ::: :: .: . gi|220 FAHSLPPARGSPDLAALRGSFSRLAFSDDLGPLGPPLPVPACSLTPRLG--GPDWVSA-G 330 340 350 360 370 380 230 240 250 260 270 280 FLJ003 ASVARRANSPRATSRLRPG-------LQLQPRGEHRPRDLHGDLLSPRRPPDDPWARPPR . : . : :.. :: :::::::::::::::::::::::::::::::::: gi|220 GRVPGPLSLPSPESQFSPGDLPPPPGLQLQPRGEHRPRDLHGDLLSPRRPPDDPWARPPR 390 400 410 420 430 440 290 300 310 320 330 340 FLJ003 SDRFPGRSVWAEPAWGDGATGGLSVYATEDDEGDARARARIALYSVFPRDQVDRVMAAFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|220 SDRFPGRSVWAEPAWGDGATGGLSVYATEDDEGDARARARIALYSVFPRDQVDRVMAAFP 450 460 470 480 490 500 350 360 FLJ003 ELSDLARLILLVQRCQSAGAPLGKP ::::::::::::::::::::::::: gi|220 ELSDLARLILLVQRCQSAGAPLGKP 510 520 >>gi|205831228|sp|A2A288.2|ZC12D_HUMAN RecName: Full=Zin (527 aa) initn: 925 init1: 857 opt: 913 Z-score: 758.9 bits: 149.6 E(): 1.4e-33 Smith-Waterman score: 913; 64.681% identity (73.191% similar) in 235 aa overlap (141-366:298-527) 120 130 140 150 160 FLJ003 QVLPPGEAAPRATGGGRRAPRQDRGPAWRGRRGAAATESPGRFRRSPGGPPGTICA--QP : ::.: :. : :.::: :. : .: gi|205 YGIKCKFYHPERPHHAQLAVADELRAKTGARPGAGAEEQ--RPPRAPGGSAGARAAPREP 270 280 290 300 310 320 170 180 190 200 210 220 FLJ003 PAGAGVPGPGRPARELLSVGLQRRPGAPGAASPGPRLQPHAPTGRARLGVRGPAGCQARS : . :. : : : ...: . . :: : : . ::: :: .: . gi|205 FAHSLPPARGSPDLAALRGSFSRLAFSDDLGPLGPPLPVPACSLTPRLG--GPDWVSA-G 330 340 350 360 370 380 230 240 250 260 270 280 FLJ003 ASVARRANSPRATSRLRPG-------LQLQPRGEHRPRDLHGDLLSPRRPPDDPWARPPR . : . : :.. :: :::::::::::::::::::::::::::::::::: gi|205 GRVPGPLSLPSPESQFSPGDLPSPPGLQLQPRGEHRPRDLHGDLLSPRRPPDDPWARPPR 390 400 410 420 430 440 290 300 310 320 330 340 FLJ003 SDRFPGRSVWAEPAWGDGATGGLSVYATEDDEGDARARARIALYSVFPRDQVDRVMAAFP ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|205 SDRFPGRSVWAEPAWGDGATGGLSVYATEDDEGDARARARIALYSVFPRDQVDRVMTAFP 450 460 470 480 490 500 350 360 FLJ003 ELSDLARLILLVQRCQSAGAPLGKP ::::::::::::::::::::::::: gi|205 ELSDLARLILLVQRCQSAGAPLGKP 510 520 >>gi|119568186|gb|EAW47801.1| hCG1749747, isoform CRA_a (673 aa) initn: 921 init1: 846 opt: 912 Z-score: 756.8 bits: 149.5 E(): 1.9e-33 Smith-Waterman score: 926; 48.324% identity (64.804% similar) in 358 aa overlap (30-366:327-673) 10 20 30 40 50 FLJ003 SLVKGTWERHSSAYPGMSVLSAPAPRPPAPPGHFSPPRPRAQILRRFQGAESEESAA-A : . .::: . : .. :: :..:. . gi|119 GNKETFSCRGIKLAVDWFRDRGHTYIKVFVPSWRKDPPRADTPIREQHVLAELERQAVLV 300 310 320 330 340 350 60 70 80 90 100 FLJ003 WGPAWRNLHGEAAGRHSPDAPGTTAPPRPRA-----SRRALSAPAP-----FRQEMHLWH . :. :..::. .. .: . . . : :.. : ..:.. .. gi|119 YTPS-RKVHGKRLVCYDDRYIVKVAYEQDGVIVSNDNYRDLQSENPEWKWFIEQRLLMFS 360 370 380 390 400 410 110 120 130 140 150 FLJ003 QV--QVLPP----GEAAPRATGGGRRAPRQDRGPAWR----GRRGAAATESPGRFRRSPG : . .:: :. .: .. : :. . :.:. :.. . . . . : gi|119 FVNDRFMPPDDPLGRHGPSLSNFLSRKPKPPE-PSWQHCPYGKKCTYGIKCKFYHPERPH 420 430 440 450 460 470 160 170 180 190 200 210 FLJ003 GPPGTICAQPPAGAGVPGPGRPARELLSVGLQRRPGAPGAASPGPRLQPHAPTGRARLGV .. . : .:. :: :.: :: : :::. : : : :. : ... . gi|119 HAQLAVADELRAKTGAR-PGAGAEE------QRPPRAPGG-SAGARAAPREPFAHSLPPA 480 490 500 510 520 220 230 240 250 260 270 FLJ003 RGPAGCQARSASVARRANSPRATSRLRPGLQLQPRGEHRPRDLHGDLLSPRRPPDDPWAR :: : .: .: : : . : : : ::::::::::::::::::::::::::::: gi|119 RGSPDLAALRGSFSRLAFSDD-LGPLGPPLPLQPRGEHRPRDLHGDLLSPRRPPDDPWAR 530 540 550 560 570 580 280 290 300 310 320 330 FLJ003 PPRSDRFPGRSVWAEPAWGDGATGGLSVYATEDDEGDARARARIALYSVFPRDQVDRVMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 PPRSDRFPGRSVWAEPAWGDGATGGLSVYATEDDEGDARARARIALYSVFPRDQVDRVMA 590 600 610 620 630 640 340 350 360 FLJ003 AFPELSDLARLILLVQRCQSAGAPLGKP :::::::::::::::::::::::::::: gi|119 AFPELSDLARLILLVQRCQSAGAPLGKP 650 660 670 >>gi|114609790|ref|XP_518794.2| PREDICTED: zinc finger C (527 aa) initn: 827 init1: 827 opt: 873 Z-score: 726.2 bits: 143.5 E(): 9.5e-32 Smith-Waterman score: 873; 62.553% identity (71.915% similar) in 235 aa overlap (141-366:298-527) 120 130 140 150 160 FLJ003 QVLPPGEAAPRATGGGRRAPRQDRGPAWRGRRGAAATESPGRFRRSPGGPPGTICA--QP : :..: :. : :.::: :. .: gi|114 YGIKCKFYHPERPHHAQLAVADELRAKTGARPGSGAEEQ--RPPRAPGGSAGARADPREP 270 280 290 300 310 320 170 180 190 200 210 220 FLJ003 PAGAGVPGPGRPARELLSVGLQRRPGAPGAASPGPRLQPHAPTGRARLGVRGPAGCQARS : . :. : : : ...: . . :: : : . ::: :: .: . gi|114 FAHSLPPARGSPDLAALRGSFSRLAFSDDLGPLGPPLPGPACSLTPRLG--GPDWVSA-G 330 340 350 360 370 380 230 240 250 260 270 280 FLJ003 ASVARRANSPRATSRLRPG-------LQLQPRGEHRPRDLHGDLLSPRRPPDDPWARPPR . : . : :.. :: :::::::::::::::::::::::::::::: ::: gi|114 GRVPGPLSLPSPESQFSPGDLPPPPGLQLQPRGEHRPRDLHGDLLSPRRPPDDPWAGPPR 390 400 410 420 430 440 290 300 310 320 330 340 FLJ003 SDRFPGRSVWAEPAWGDGATGGLSVYATEDDEGDARARARIALYSVFPRDQVDRVMAAFP :::::::::::::::::::::::::::.:::::.:::::::::::::::::::::::::: gi|114 SDRFPGRSVWAEPAWGDGATGGLSVYAAEDDEGNARARARIALYSVFPRDQVDRVMAAFP 450 460 470 480 490 500 350 360 FLJ003 ELSDLARLILLVQRCQSAGAPLGKP :::::::::::::: :::::::::: gi|114 ELSDLARLILLVQRSQSAGAPLGKP 510 520 >>gi|109072444|ref|XP_001087043.1| PREDICTED: similar to (526 aa) initn: 506 init1: 438 opt: 830 Z-score: 691.0 bits: 137.0 E(): 8.7e-30 Smith-Waterman score: 830; 62.025% identity (72.152% similar) in 237 aa overlap (141-366:298-526) 120 130 140 150 160 FLJ003 QVLPPGEAAPRATGGGRRAPRQDRGPAWRGRRGAAATES-PGRFRRSPGGPPGTICA-QP : ::.: :. : :.:::: :. : : gi|109 YGIKCKFYHPERPHHAQLAVADELRAKTGARPGAGAEEQLPP---RAPGGPAGARAAPQE 270 280 290 300 310 320 170 180 190 200 210 220 FLJ003 PAGAGVP-GPGRPARELLSVGLQRRPGA--PGAASPGPRLQPHAPTGRARLGVRGP---- :.. ..: . : : :. ...: . :: .: : :: ::: :: gi|109 PVAHSLPLARGSPDLVALQGSFSRLAFSDDPGPLGPPP--PGHACGLTPRLG--GPDWVS 330 340 350 360 370 380 230 240 250 260 270 FLJ003 AGCQARSASVARRANSPRATSRLRP--GLQLQPRGEHRPRDLHGDLLSPRRPPDDPWARP ::::. . .: . . : : ::::::::::::::::::::: :: ::::::: gi|109 AGCQVPGPLSLPSPESQFSPGDLPPPPGLQLQPRGEHRPRDLHGDLLSSRRLPDDPWARL 390 400 410 420 430 440 280 290 300 310 320 330 FLJ003 PRSDRFPGRSVWAEPAWGDGATGGLSVYATEDDEGDARARARIALYSVFPRDQVDRVMAA :.::::::::.::::::::::::::: ::.:: ::.:::::::::::::::::::::::: gi|109 PHSDRFPGRSAWAEPAWGDGATGGLSGYAAED-EGEARARARIALYSVFPRDQVDRVMAA 450 460 470 480 490 340 350 360 FLJ003 FPELSDLARLILLVQRCQSAGAPLGKP :: ::::::::::::: :::::::::: gi|109 FPALSDLARLILLVQRSQSAGAPLGKP 500 510 520 >>gi|194670042|ref|XP_872877.3| PREDICTED: similar to zi (659 aa) initn: 342 init1: 230 opt: 492 Z-score: 413.6 bits: 86.0 E(): 2.5e-14 Smith-Waterman score: 494; 37.459% identity (53.746% similar) in 307 aa overlap (72-365:370-658) 50 60 70 80 90 FLJ003 QILRRFQGAESEESAAAWGPAWRNLHGEAAGRHSPDAPGTTA----PPRPRASRRALSAP ::..: . . ::.: .. . gi|194 ENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFLSRKPKPPEPSWQHCPYGKK 340 350 360 370 380 390 100 110 120 130 140 150 FLJ003 APFRQEMHLWHQVQVLPPGEAAPRATGGGRRAPRQDRGPAWRGRRGAAATESPGRFRRSP . . ...: . : .: :.. :: : : :::: : : : : . gi|194 CTYGIKCKFYHPER---PHQAQ-LAVADELRA--QTR--AWRGAGGE--EERRGSARAAS 400 410 420 430 440 160 170 180 190 200 210 FLJ003 GGPPGTICAQPPAGAGVPGPGRPARELLSVGL---QRRPGAPGAASPGPRLQPHAPTGRA . : .. : :. ::: ::: . .: .: : : :: : gi|194 LAEQG---GSRDAPAARPGP----RELGTRSLPTARRSAGLATLESSFSRLFLSDDPGLL 450 460 470 480 490 500 220 230 240 250 260 270 FLJ003 RLGVRGPAGCQARSASVARRANSPRATSRL--RPGLQLQP--RGEHRPRDLHGDLLSPRR : ::: :: .. . .: . : : :::: : :::. :: ..: :::. gi|194 RAPHRGP-GCGLAPGQPGPDWVAPGSLSSLPARPGLLSPPGLRGEYGPRAPQSDRRSPRQ 510 520 530 540 550 560 280 290 300 310 320 FLJ003 PPDDPWARPPRSDRFPGRSVWAEPAWGDGATGGLSVYATEDDEG--DARARARIALYSVF : :::. :: . ..::::.::: : ::: :: : . : :::.::: :: :.: gi|194 QPGDPWVLPPGAGQLPGRSAWAESDWDDGAFGGPLRPAPQAVAGEVDARSRARTALCSIF 570 580 590 600 610 620 330 340 350 360 FLJ003 PRDQVDRVMAAFPELSDLARLILLVQRCQSAGAPLGKP : .:: .:: ::::::.:::.::.:: : ..::.:: gi|194 PPHEVDSIMALFPELSDVARLMLLIQRFQRSSAPVGKR 630 640 650 >>gi|149039531|gb|EDL93693.1| similar to zinc finger CCC (533 aa) initn: 373 init1: 184 opt: 367 Z-score: 312.5 bits: 67.0 E(): 1.1e-08 Smith-Waterman score: 371; 37.652% identity (54.656% similar) in 247 aa overlap (137-366:300-533) 110 120 130 140 150 160 FLJ003 WHQVQVLPPGEAAPRATGGGRRAPRQDRGPAWRGRRGAAATESPGRFRRSPGGP-PGTIC :: : :.:. : : ::. : . gi|149 TYGVKCRFYHPERPHQGQLPVADELRAKTRAWPG--GGAGESRPPSARSRPGAARPLPL- 270 280 290 300 310 320 170 180 190 200 210 FLJ003 AQPPAGAGVPGPGRPARELLSVGLQRRPGAPGAASP------GP-RLQPHAPTGRARLGV .: : .:.: : :. .. : . ::: :: :. .::. : .. gi|149 -EPGAHNPTPAPQPAALTALNQSFARLTFSDTAASGVVSLSRGPDRMPTSGPTSWASPSL 330 340 350 360 370 380 220 230 240 250 260 270 FLJ003 RGPAGCQARSASVARRA-NSPRATSRLRPGL-------QLQPRGEHRPRDLHGDLLSPRR : :: : ..: . : .: .: : :: : :: .: : .:.:: :: gi|149 R--AGSVATQGSPGLRCLRTP--NSLLSPGDLGSPICPQSQPSDRHCSRGMHSDLPPQRR 390 400 410 420 430 440 280 290 300 310 320 FLJ003 PPDDPWARPPRSDRFPGRSVWAEPAWGDGATGGLSVYATED-DEGDARARARIALYSVFP ::.:::: : : . ..::::: ::.... : : : . : .:: .: :.:: gi|149 PPEDPWAFLPSSYGYLNHSVWAESAWSENTFGRPSGSAQSTINSGGTRA----SLCSAFP 450 460 470 480 490 330 340 350 360 FLJ003 RDQVDRVMAAFPELSDLARLILLVQRCQSAGAPLGKP :. : :::. : :::.: : :.:: :..::::: : gi|149 SDREDPVMASDPVLSDVA-LRTLLQRSQKTGAPLGDP 500 510 520 530 >>gi|26342995|dbj|BAC35154.1| unnamed protein product [M (430 aa) initn: 332 init1: 172 opt: 346 Z-score: 296.4 bits: 63.7 E(): 8.3e-08 Smith-Waterman score: 349; 31.646% identity (51.266% similar) in 316 aa overlap (60-366:139-430) 30 40 50 60 70 80 FLJ003 PPGHFSPPRPRAQILRRFQGAESEESAAAWGPAWRNLHGEAAGRHSPDAPGTTAPPRPRA ::. :. .. .: : . : . gi|263 EWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFLSK-----KPRPPEPSWQHCPYG 110 120 130 140 150 160 90 100 110 120 130 140 FLJ003 SRRALSAPAPFRQEMHLWH-QVQVLPPGEAAPRA-TGGGRRAPRQDRGPAWRGRRGAAAT .. . .. : . . : :..: .: :: ::: . :: :. :.: .: gi|263 KKCTYGVKCRFYHPERPHHGQLSVADELRAKTRAWLGGGAEEPRT---PSARSRPTTARL 170 180 190 200 210 220 150 160 170 180 190 200 FLJ003 --ESPGRFRRSPGGPPGTICAQPPAGAGVPGPGRPARELLSV--GLQRRP-GAPGAASPG . ::. :. :... : . : . : ..: : . : :.: . .: gi|263 LPQEPGEHDLPPAPQPAVLAALNRSFARLTFSDTAASGVVSQSRGPDWMPTGVPTSWAP- 230 240 250 260 270 210 220 230 240 250 260 FLJ003 PRLQPHAPTGRARLGVRGPAGCQARSASVARRANSPRATSRLRPGLQLQPR--GEHRPRD : :. . : .:. : :: : :.: . . : . : : .:: :: gi|263 PSLRAGSA---ATIGLPG-----MRSL---RTPNNPLSPGDLGSPICPQARLSERHRSRD 280 290 300 310 320 270 280 290 300 310 320 FLJ003 LHGDLLSPRRPPDDPWARPPRSDRFPGRSVWAEPAWGDGATGGLSVYATEDDEGDARARA .:.:: ::: .:::: : : . ..:::.: :::. : : : .: . . gi|263 MHSDLPPQRRPLEDPWALLPSSYCYLNHSVWSESAWGEDIFRGPSESAQPVANGGG---T 330 340 350 360 370 380 330 340 350 360 FLJ003 RIALYSVFPRDQVDRVMAAFPELSDLARLILLVQRCQSAGAPLGKP : . : :: :: :::. : :::.: :. :.:: :..::::: : gi|263 RPVHCSFFPPDQDHPVMASGPPLSDMA-LLTLLQRSQKTGAPLGDP 390 400 410 420 430 >>gi|133777343|gb|AAI12399.1| Zinc finger CCCH type cont (430 aa) initn: 332 init1: 172 opt: 346 Z-score: 296.4 bits: 63.7 E(): 8.3e-08 Smith-Waterman score: 349; 31.646% identity (51.266% similar) in 316 aa overlap (60-366:139-430) 30 40 50 60 70 80 FLJ003 PPGHFSPPRPRAQILRRFQGAESEESAAAWGPAWRNLHGEAAGRHSPDAPGTTAPPRPRA ::. :. .. .: : . : . gi|133 EWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFLSK-----KPRPPEPSWQHCPYG 110 120 130 140 150 160 90 100 110 120 130 140 FLJ003 SRRALSAPAPFRQEMHLWH-QVQVLPPGEAAPRA-TGGGRRAPRQDRGPAWRGRRGAAAT .. . .. : . . : :..: .: :: ::: . :: :. :.: .: gi|133 KKCTYGVKCRFYHPERPHHGQLSVADELRAKTRAWLGGGAEEPRT---PSARSRPTTARL 170 180 190 200 210 220 150 160 170 180 190 200 FLJ003 --ESPGRFRRSPGGPPGTICAQPPAGAGVPGPGRPARELLSV--GLQRRP-GAPGAASPG . ::. :. :... : . : . : ..: : . : :.: . .: gi|133 LPQEPGEHDLPPAPQPAVLAALNRSFARLTFSDTAASGVVSQSRGPDWMPTGVPTSWAP- 230 240 250 260 270 210 220 230 240 250 260 FLJ003 PRLQPHAPTGRARLGVRGPAGCQARSASVARRANSPRATSRLRPGLQLQPR--GEHRPRD : :. . : .:. : :: : :.: . . : . : : .:: :: gi|133 PSLRAGSA---ATIGLPG-----MRSL---RTPNNPLSPGDLGSPICPQARLSERHRSRD 280 290 300 310 320 270 280 290 300 310 320 FLJ003 LHGDLLSPRRPPDDPWARPPRSDRFPGRSVWAEPAWGDGATGGLSVYATEDDEGDARARA .:.:: ::: .:::: : : . ..:::.: :::. : : : .: . . gi|133 MHSDLPPQRRPLEDPWALLPSSYCYLNHSVWSESAWGEDIFRGPSESAQPVANGGG---T 330 340 350 360 370 380 330 340 350 360 FLJ003 RIALYSVFPRDQVDRVMAAFPELSDLARLILLVQRCQSAGAPLGKP : . : :: :: :::. : :::.: :. :.:: :..::::: : gi|133 RPVHCSFFPPDQDHPVMASGPPLSDMA-LLTLLQRSQKTGAPLGDP 390 400 410 420 430 366 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 21:18:53 2009 done: Fri Feb 27 21:25:04 2009 Total Scan time: 846.060 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]