# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh04549.fasta.huge -Q ../query/FLJ00301.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00301, 140 aa vs ./tmplib.10216 library 2210854 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.7983+/-0.00349; mu= 15.2637+/- 0.237 mean_var=68.1522+/-14.338, 0's: 0 Z-trim: 27 B-trim: 0 in 0/40 Lambda= 0.155358 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA2003 ( 460 res) ah02593 ( 460) 270 68.7 3.3e-13 KIAA1431 ( 891 res) fj00022 ( 891) 239 62.1 6.1e-11 KIAA0412 ( 720 res) hg03242 ( 720) 233 60.7 1.4e-10 KIAA1473 ( 574 res) fj03262 ( 574) 221 57.8 7.7e-10 KIAA0065 ( 848 res) ha00946 ( 848) 219 57.6 1.3e-09 KIAA1611 ( 813 res) fj12627 ( 813) 214 56.5 2.8e-09 KIAA0543 ( 1111 res) hg04390 (1111) 215 56.9 2.9e-09 KIAA1852 ( 948 res) fj01514 ( 948) 213 56.3 3.6e-09 KIAA1588 ( 613 res) fj08823 ( 613) 211 55.6 3.8e-09 FLJ00309 ( 564 res) sh05969 ( 564) 210 55.4 4.2e-09 KIAA1559 ( 544 res) fh19195 ( 544) 207 54.7 6.6e-09 KIAA2033 ( 766 res) ej00602s1 ( 766) 201 53.5 2e-08 KIAA0961 ( 530 res) hj05830 ( 530) 198 52.6 2.6e-08 KIAA1956 ( 680 res) fk08713 ( 680) 198 52.8 3e-08 KIAA1969 ( 595 res) fk06944 ( 595) 192 51.4 7.1e-08 KIAA0972 ( 702 res) hj06859 ( 702) 192 51.5 7.8e-08 KIAA2007 ( 580 res) fj01689 ( 580) 183 49.3 2.8e-07 KIAA1710 ( 515 res) fj18457 ( 515) 182 49.0 3.1e-07 KIAA0798 ( 682 res) hk06584 ( 682) 183 49.4 3.1e-07 KIAA1285 ( 785 res) hh11563(revised) ( 785) 182 49.3 4e-07 KIAA1862 ( 1070 res) aj00563 (1070) 180 49.0 6.5e-07 KIAA1806 ( 481 res) fk00438 ( 481) 176 47.6 7.5e-07 KIAA1513 ( 649 res) fh00168(revised) ( 649) 164 45.1 5.8e-06 KIAA1874 ( 579 res) hk07257s1 ( 579) 157 43.5 1.6e-05 KIAA1962 ( 746 res) hm00158 ( 746) 152 42.5 4.1e-05 KIAA1198 ( 553 res) fg01911 ( 553) 146 41.0 8.7e-05 KIAA1015 ( 841 res) hk03609(revised) ( 841) 132 38.1 0.00098 KIAA0557 ( 493 res) hh01334 ( 493) 98 30.2 0.14 FLJ00284 ( 366 res) sh02281 ( 366) 95 29.3 0.19 FLJ00187 ( 563 res) sj02149 ( 563) 95 29.6 0.24 FLJ00288 ( 217 res) sh02579 ( 217) 82 26.1 1 KIAA1839 ( 541 res) fh00676 ( 541) 79 26.0 2.8 KIAA0456 ( 1095 res) hg00633 (1095) 78 26.2 5 KIAA0593 ( 2005 res) hj02824s1 (2005) 80 27.0 5.3 KIAA0100 ( 2235 res) ef04121 (2235) 79 26.8 6.5 KIAA0320 ( 1933 res) bg00151 (1933) 78 26.5 7 KIAA1859 ( 761 res) bm01165 ( 761) 72 24.6 10 KIAA1055 ( 868 res) hh09512 ( 868) 71 24.5 13 KIAA0464 ( 586 res) hg01093(revised) ( 586) 69 23.8 14 KIAA1516 ( 2304 res) fh10631s2 (2304) 74 25.7 14 FLJ00318 ( 127 res) sh07374 ( 127) 62 21.3 17 KIAA0914 ( 678 res) sj01106 ( 678) 68 23.6 18 KIAA1934 ( 452 res) fk02059 ( 452) 66 22.9 19 KIAA0935 ( 952 res) af13188 ( 952) 68 23.8 22 KIAA1843 ( 1778 res) bf02364 (1778) 70 24.7 23 KIAA0380 ( 1539 res) hh00518 (1539) 69 24.3 25 KIAA1629 ( 1329 res) fh20517 (1329) 68 24.0 26 KIAA0260 ( 383 res) ha07062 ( 383) 63 22.2 28 FLJ00176 ( 403 res) sj00934 ( 403) 63 22.2 28 KIAA0159 ( 1406 res) ha03574 (1406) 67 23.8 32 >>KIAA2003 ( 460 res) ah02593 (460 aa) initn: 276 init1: 221 opt: 270 Z-score: 330.4 bits: 68.7 E(): 3.3e-13 Smith-Waterman score: 270; 68.182% identity (83.333% similar) in 66 aa overlap (20-85:20-84) 10 20 30 40 50 60 FLJ003 GSVAAPRVARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQR ::. ::::::: :.: : ::::::::.:: ::: :::.::: KIAA20 GPLSPGPYQCRPSLPAQLYPQSLMAAATLRTPTQ-GTVTFEDVAVHFSWEEWGLLDEAQR 10 20 30 40 50 70 80 90 100 110 120 FLJ003 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILRVWLRNRSANL :::.:::::..::.:: . .: : KIAA20 CLYRDVMLENLALLTSLDVHRQKQHLGEKHFRSNVGRALFVKTCTFHVSGEPSTCREVGK 60 70 80 90 100 110 >>KIAA1431 ( 891 res) fj00022 (891 aa) initn: 284 init1: 227 opt: 239 Z-score: 289.8 bits: 62.1 E(): 6.1e-11 Smith-Waterman score: 239; 47.706% identity (63.303% similar) in 109 aa overlap (10-112:92-195) 10 20 30 FLJ003 GSVAAPRVARALSSVVVSPPQAPM----AAATLRDPA-- ::: : .. :: :..: .: KIAA14 LALPARGRPRSRNGLASKGQRGAAPTGPGHRALPSRDTALPQERNKKLEAVGTGIEPKAM 70 80 90 100 110 120 40 50 60 70 80 90 FLJ003 QQGYVTFEDVAVYFSQEEWRLLDDAQRLLYRNVMLENFTLLASLGLASSKTHEITQLESW .:: ::: :::: ::::::. :. :: :::.:::::. :::::: :: :..::. KIAA14 SQGLVTFGDVAVDFSQEEWEWLNPIQRNLYRKVMLENYRNLASLGLCVSKPDVISSLEQG 130 140 150 160 170 180 100 110 120 130 140 FLJ003 EEPFMPAWEVVTSAILRVWLRNRSANLLTQIFFPNRQPQVAPEQGRE .:: : .: . :.: KIAA14 KEP----W-TVKRKMTRAWCPDLKAVWKIKELPLKKDFCEGKLSQAVITERLTSYNLEYS 190 200 210 220 230 >>KIAA0412 ( 720 res) hg03242 (720 aa) initn: 254 init1: 202 opt: 233 Z-score: 283.5 bits: 60.7 E(): 1.4e-10 Smith-Waterman score: 233; 50.515% identity (65.979% similar) in 97 aa overlap (1-97:74-166) 10 20 30 FLJ003 GSVAAPRVARALSSVVVSPPQAPMAAATLR ::: : : : . .: ::::.: KIAA04 LRLERRCHRGGGGPERAWKPRATGQGRAQVGSVRPP---GAPLSQLCGPGGDVMAAAVLT 50 60 70 80 90 100 40 50 60 70 80 90 FLJ003 DPAQQGYVTFEDVAVYFSQEEWRLLDDAQRLLYRNVMLENFTLLASLGLASSKTHEITQL : :: . :::.:::: :..::: :: ::: ::..::::: ::.::: :.. : .: KIAA04 DRAQVS-VTFDDVAVTFTKEEWGQLDLAQRTLYQEVMLENCGLLVSLGCPVPKAELICHL 110 120 130 140 150 100 110 120 130 140 FLJ003 ESWEEPFMPAWEVVTSAILRVWLRNRSANLLTQIFFPNRQPQVAPEQGRE : .::. KIAA04 EHGQEPWTRKEDLSQDTCPGDKGKPKTTEPTTCEPALSEGISLQGQVTQGNSVDSQLGQA 160 170 180 190 200 210 >>KIAA1473 ( 574 res) fj03262 (574 aa) initn: 205 init1: 205 opt: 221 Z-score: 270.0 bits: 57.8 E(): 7.7e-10 Smith-Waterman score: 221; 51.250% identity (70.000% similar) in 80 aa overlap (26-103:1-76) 10 20 30 40 50 FLJ003 GSVAAPRVARALSSVVVSPPQAPMAAATLRDPA--QQGYVTFEDVAVYFSQEEWRLLDDA : :: :. . : .::.:::. :: :::. :: : KIAA14 AKTLGPPGSLETGVLTFRDVAIEFSLEEWQCLDTA 10 20 30 60 70 80 90 100 110 FLJ003 QRLLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILRVWLRNRSA :. :::::::::. :. .:.:.:: :: ::. .:: :.: KIAA14 QQNLYRNVMLENYRNLVFVGIAASKPDLITCLEQGKEP----WNVKRHEMVAEPPVVCSY 40 50 60 70 80 90 120 130 140 FLJ003 NLLTQIFFPNRQPQVAPEQGRE KIAA14 FARDLWPKQGKKNYFQKVILRRYKKCGCENLQLRKYCKSMDECKVHKECYNGLNQCLTTT 100 110 120 130 140 150 >>KIAA0065 ( 848 res) ha00946 (848 aa) initn: 232 init1: 201 opt: 219 Z-score: 265.8 bits: 57.6 E(): 1.3e-09 Smith-Waterman score: 219; 36.170% identity (59.574% similar) in 141 aa overlap (6-138:19-156) 10 20 30 40 FLJ003 GSVAAPRVARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYF : :.:: . :: . . . .: :.:.::.: : KIAA00 GGGPGISRVYALFYGECNPTREWAVSSEL-SPSFQEQNKMNKVEQKSQESVSFKDVTVGF 10 20 30 40 50 50 60 70 80 90 100 FLJ003 SQEEWRLLDDAQRLLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSA .::::. :: .:: :::.:::::.. :.:.: : . : .:.. :::. : : KIAA00 TQEEWQHLDPSQRALYRDVMLENYSNLVSVGYCVHKPEVIFRLQQGEEPWKQE-EEFPSQ 60 70 80 90 100 110 110 120 130 140 FLJ003 ILRVW----LRNRS----ANLLTQIFFPNRQPQVAPEQGRE . :: :..:: .. : .. : : . ... ::: KIAA00 SFPVWTADHLKERSQENQSKHLWEVVFINNE-MLTKEQGDVIGIPFNVDVSSFPSRKMFC 120 130 140 150 160 170 KIAA00 QCDSCGMSFNTVSELVISKINYLGKKSDEFNACGKLLLNIKHDETHTQEKNEVLKNRNTL 180 190 200 210 220 230 >>KIAA1611 ( 813 res) fj12627 (813 aa) initn: 213 init1: 213 opt: 214 Z-score: 259.9 bits: 56.5 E(): 2.8e-09 Smith-Waterman score: 214; 56.667% identity (78.333% similar) in 60 aa overlap (38-97:3-62) 10 20 30 40 50 60 FLJ003 VARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQRLLYRNVM .::.:::. ::::::. :: :::.:::.:: KIAA16 VRLTFRDVAIEFSQEEWKCLDPAQRILYRDVM 10 20 30 70 80 90 100 110 120 FLJ003 LENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILRVWLRNRSANLLTQIFFP :::. :.:::: . :..:: .::. KIAA16 LENYWNLVSLGLCHFDMNIISMLEEGKEPWTVKSCVKIARKPRTRECVKGVVTDIPPKCT 40 50 60 70 80 90 >>KIAA0543 ( 1111 res) hg04390 (1111 aa) initn: 201 init1: 201 opt: 215 Z-score: 259.7 bits: 56.9 E(): 2.9e-09 Smith-Waterman score: 215; 52.174% identity (71.014% similar) in 69 aa overlap (38-101:275-343) 10 20 30 40 50 60 FLJ003 VARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQRLLYRNVM :.::::::::..::: .:: :. :::.:: KIAA05 LYNDAVESCIQDPSAEGLSEEVPVVFEELPVVFEDVAVYFTREEWGMLDKRQKELYRDVM 250 260 270 280 290 300 70 80 90 100 110 120 FLJ003 LENFTLLASLGLASSKTHEITQLES----W-EEPFMPAWEVVTSAILRVWLRNRSANLLT :. :::::: :..: :..:: : ..: : : KIAA05 RMNYELLASLGPAAAKPDLISKLERRAAPWIKDPNGPKWGKGRPPGNKKMVAVREADTQA 310 320 330 340 350 360 130 140 FLJ003 QIFFPNRQPQVAPEQGRE KIAA05 SAADSALLPGSPVEARASCCSSSICEEGDGPRRIKRTYRPRSIQRSWFGQFPWLVIDPKE 370 380 390 400 410 420 >>KIAA1852 ( 948 res) fj01514 (948 aa) initn: 192 init1: 192 opt: 213 Z-score: 258.0 bits: 56.3 E(): 3.6e-09 Smith-Waterman score: 213; 41.071% identity (62.500% similar) in 112 aa overlap (24-130:209-311) 10 20 30 40 50 FLJ003 GSVAAPRVARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWR . :: ...: :::.:::: :.:::: KIAA18 VDPWASWALCPQYPAWHVEGSLEEGRRATGLPAAQVQEP-----VTFKDVAVDFTQEEWG 180 190 200 210 220 230 60 70 80 90 100 110 FLJ003 LLDDAQRLLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILRV-- :: .:: :::.::::.. : :.: .: . :. ::. ::: : : . :. KIAA18 QLDLVQRTLYRDVMLETYGHLLSVGNQIAKPEVISLLEQGEEP----WSVEQACPQRTCP 240 250 260 270 280 120 130 140 FLJ003 -WLRNRSANLL--TQIFFPNRQPQVAPEQGRE :.:: .. : .: .: ..: KIAA18 EWVRNLESKALIPAQSIFEEEQSHGMKLERYIWDDPWFSRLEVLGCKDQLEMYHMNQSTA 290 300 310 320 330 340 >>KIAA1588 ( 613 res) fj08823 (613 aa) initn: 209 init1: 209 opt: 211 Z-score: 257.6 bits: 55.6 E(): 3.8e-09 Smith-Waterman score: 211; 54.839% identity (79.032% similar) in 62 aa overlap (35-96:72-133) 10 20 30 40 50 60 FLJ003 APRVARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQRLLYR : :::.:::: :...:: :::..:: ::. KIAA15 PVSSKDHSCPQNLDLFVCSGLEPHTPSVGSQESVTFQDVAVDFTEKEWPLLDSSQRKLYK 50 60 70 80 90 100 70 80 90 100 110 120 FLJ003 NVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILRVWLRNRSANLLTQI .:::::.. :.::: .: :..::. ::: KIAA15 DVMLENYSNLTSLGYQVGKPSLISHLEQEEEPRTEERGAHQGACADWETPSKTKWSLLME 110 120 130 140 150 160 130 140 FLJ003 FFPNRQPQVAPEQGRE KIAA15 DIFGKETPSGVTMERAGLGEKSTEYAHLFEVFGMDPHLTQPMGRHAGKRPYHRRDYGVAF 170 180 190 200 210 220 >>FLJ00309 ( 564 res) sh05969 (564 aa) initn: 209 init1: 209 opt: 210 Z-score: 256.7 bits: 55.4 E(): 4.2e-09 Smith-Waterman score: 210; 67.925% identity (84.906% similar) in 53 aa overlap (35-86:1-53) 10 20 30 40 50 60 FLJ003 APRVARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQRLLYR :: :::::::: :::::: ::..::: ::: FLJ003 QGTVTFEDVAVNFSQEEWCLLSEAQRCLYR 10 20 30 70 80 90 100 110 120 FLJ003 NVMLENFTLLASLGL-ASSKTHEITQLESWEEPFMPAWEVVTSAILRVWLRNRSANLLTQ .:::::..:..::: .:: .: FLJ003 DVMLENLALISSLGCWCGSKDEEAPCKQRISVQRESQSRTPRAGVSPKKAHPCEMCGLIL 40 50 60 70 80 90 140 residues in 1 query sequences 2210854 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:19 2009 done: Fri Feb 27 10:51:19 2009 Total Scan time: 0.320 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]