# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh04549.fasta.nr -Q ../query/FLJ00301.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00301, 140 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7822811 sequences Expectation_n fit: rho(ln(x))= 4.9392+/-0.00018; mu= 7.0729+/- 0.010 mean_var=60.1622+/-11.710, 0's: 35 Z-trim: 68 B-trim: 0 in 0/68 Lambda= 0.165353 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|47077669|dbj|BAD18715.1| FLJ00301 protein [Homo ( 140) 916 226.1 1.3e-57 gi|74758405|sp|Q6PK81.1|ZN773_HUMAN RecName: Full= ( 442) 565 142.7 5.5e-32 gi|148612823|ref|NP_001091962.1| zinc finger prote ( 498) 552 139.6 5.2e-31 gi|16552811|dbj|BAB71382.1| unnamed protein produc ( 441) 546 138.1 1.3e-30 gi|194385970|dbj|BAG65360.1| unnamed protein produ ( 497) 533 135.1 1.2e-29 gi|148612865|ref|NP_001091963.1| zinc finger prote ( 497) 533 135.1 1.2e-29 gi|221045700|dbj|BAH14527.1| unnamed protein produ ( 497) 533 135.1 1.2e-29 gi|148612893|ref|NP_001091961.1| zinc finger prote ( 511) 533 135.1 1.2e-29 gi|119592910|gb|EAW72504.1| zinc finger protein 41 ( 511) 533 135.1 1.2e-29 gi|109126236|ref|XP_001093246.1| PREDICTED: simila ( 441) 522 132.4 6.7e-29 gi|14249844|gb|AAH08297.1| Zinc finger protein 419 ( 510) 517 131.3 1.7e-28 gi|209572704|sp|Q96HQ0.2|ZN419_HUMAN RecName: Full ( 510) 517 131.3 1.7e-28 gi|62088322|dbj|BAD92608.1| zinc finger protein 41 ( 487) 488 124.3 2e-26 gi|148612827|ref|NP_001091965.1| zinc finger prote ( 465) 349 91.2 1.8e-16 gi|215273919|sp|Q3KQV3.2|ZN792_HUMAN RecName: Full ( 632) 348 91.0 2.8e-16 gi|194385940|dbj|BAG65345.1| unnamed protein produ ( 632) 348 91.0 2.8e-16 gi|114676654|ref|XP_524215.2| PREDICTED: similar t ( 632) 348 91.0 2.8e-16 gi|109124325|ref|XP_001092908.1| PREDICTED: simila ( 634) 342 89.6 7.6e-16 gi|194378688|dbj|BAG63509.1| unnamed protein produ ( 464) 330 86.6 4.3e-15 gi|148612868|ref|NP_001091966.1| zinc finger prote ( 464) 330 86.6 4.3e-15 gi|119592911|gb|EAW72505.1| zinc finger protein 41 ( 478) 330 86.6 4.4e-15 gi|10439850|dbj|BAB15582.1| unnamed protein produc ( 478) 330 86.6 4.4e-15 gi|119368827|sp|Q68DY9.2|ZN772_HUMAN RecName: Full ( 489) 323 85.0 1.4e-14 gi|55650091|ref|XP_524426.1| PREDICTED: hypothetic ( 489) 323 85.0 1.4e-14 gi|109126234|ref|XP_001093025.1| PREDICTED: simila ( 489) 321 84.5 2e-14 gi|151555862|gb|AAI49497.1| ZNF773 protein [Bos ta ( 469) 320 84.2 2.3e-14 gi|119910452|ref|XP_597530.3| PREDICTED: similar t ( 579) 320 84.3 2.7e-14 gi|114679439|ref|XP_001145948.1| PREDICTED: hypoth ( 464) 298 79.0 8.5e-13 gi|119592935|gb|EAW72529.1| zinc finger protein 67 ( 534) 295 78.3 1.6e-12 gi|10440218|dbj|BAB15677.1| unnamed protein produc ( 534) 295 78.3 1.6e-12 gi|74760400|sp|Q8TAW3.1|ZN671_HUMAN RecName: Full= ( 556) 295 78.3 1.6e-12 gi|119592999|gb|EAW72593.1| FLJ45850 protein [Homo ( 583) 293 77.9 2.3e-12 gi|148699391|gb|EDL31338.1| cDNA sequence BC023179 ( 237) 288 76.4 2.6e-12 gi|194675586|ref|XP_873031.3| PREDICTED: similar t (1055) 295 78.5 2.7e-12 gi|74210738|dbj|BAE25023.1| unnamed protein produc ( 416) 288 76.6 4.1e-12 gi|80478448|gb|AAI08354.1| CDNA sequence BC023179 ( 416) 288 76.6 4.1e-12 gi|18606034|gb|AAH23179.1| CDNA sequence BC023179 ( 416) 288 76.6 4.1e-12 gi|109126250|ref|XP_001094884.1| PREDICTED: simila ( 532) 287 76.4 5.8e-12 gi|73947268|ref|XP_541340.2| PREDICTED: similar to ( 586) 287 76.4 6.3e-12 gi|109126345|ref|XP_001102916.1| PREDICTED: simila ( 807) 288 76.7 7e-12 gi|119592995|gb|EAW72589.1| zinc finger protein 58 ( 421) 284 75.6 7.9e-12 gi|55976735|sp|Q8IVC4.1|ZN584_HUMAN RecName: Full= ( 421) 284 75.6 7.9e-12 gi|158261159|dbj|BAF82757.1| unnamed protein produ ( 421) 284 75.6 7.9e-12 gi|149016574|gb|EDL75775.1| rCG27445 [Rattus norve ( 581) 285 75.9 8.7e-12 gi|34534795|dbj|BAC87113.1| unnamed protein produc ( 544) 283 75.5 1.2e-11 gi|74757410|sp|Q6AW86.1|Z324B_HUMAN RecName: Full= ( 544) 283 75.5 1.2e-11 gi|109126289|ref|XP_001097216.1| PREDICTED: simila ( 422) 281 74.9 1.3e-11 gi|73947295|ref|XP_853583.1| PREDICTED: similar to (1317) 285 76.2 1.7e-11 gi|73947333|ref|XP_533572.2| PREDICTED: similar to ( 191) 274 73.0 2.2e-11 gi|194380130|dbj|BAG63832.1| unnamed protein produ ( 448) 274 73.3 4.4e-11 >>gi|47077669|dbj|BAD18715.1| FLJ00301 protein [Homo sap (140 aa) initn: 916 init1: 916 opt: 916 Z-score: 1190.4 bits: 226.1 E(): 1.3e-57 Smith-Waterman score: 916; 100.000% identity (100.000% similar) in 140 aa overlap (1-140:1-140) 10 20 30 40 50 60 FLJ003 GSVAAPRVARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|470 GSVAAPRVARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQR 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILRVWLRNRSANL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|470 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILRVWLRNRSANL 70 80 90 100 110 120 130 140 FLJ003 LTQIFFPNRQPQVAPEQGRE :::::::::::::::::::: gi|470 LTQIFFPNRQPQVAPEQGRE 130 140 >>gi|74758405|sp|Q6PK81.1|ZN773_HUMAN RecName: Full=Zinc (442 aa) initn: 564 init1: 564 opt: 565 Z-score: 730.5 bits: 142.7 E(): 5.5e-32 Smith-Waterman score: 565; 97.778% identity (97.778% similar) in 90 aa overlap (24-112:1-90) 10 20 30 40 50 60 FLJ003 GSVAAPRVARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQR ::::::::::::::::::::::::::::::::::::: gi|747 MAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQR 10 20 30 70 80 90 100 110 FLJ003 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILR-VWLRNRSAN :::::::::::::::::::::::::::::::::::::::::::::::::: : gi|747 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILRGSWQGAKAEA 40 50 60 70 80 90 120 130 140 FLJ003 LLTQIFFPNRQPQVAPEQGRE gi|747 AAEQSASVEVPSSNVQQHQKQHCGEKPLKRQEGRVPVLRSCRVHLSEKSLQSREVGKDLL 100 110 120 130 140 150 >>gi|148612823|ref|NP_001091962.1| zinc finger protein 4 (498 aa) initn: 550 init1: 550 opt: 552 Z-score: 713.0 bits: 139.6 E(): 5.2e-31 Smith-Waterman score: 552; 95.556% identity (96.667% similar) in 90 aa overlap (24-112:1-90) 10 20 30 40 50 60 FLJ003 GSVAAPRVARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQR ::::.:::::::::::::::::::::::::::::::: gi|148 MAAAALRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQR 10 20 30 70 80 90 100 110 FLJ003 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILR-VWLRNRSAN :::::::::::::::::::::::::::::::::::::::::::::::: : : gi|148 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAIPRGCWHGAEAEE 40 50 60 70 80 90 120 130 140 FLJ003 LLTQIFFPNRQPQVAPEQGRE gi|148 APEQIASVGLLSSNIQQHQKQHCGEKPLKRQEGRVPVLRSCKVHLSEKSLQSREVGKALL 100 110 120 130 140 150 >>gi|16552811|dbj|BAB71382.1| unnamed protein product [H (441 aa) initn: 496 init1: 496 opt: 546 Z-score: 706.0 bits: 138.1 E(): 1.3e-30 Smith-Waterman score: 546; 96.667% identity (96.667% similar) in 90 aa overlap (24-112:1-89) 10 20 30 40 50 60 FLJ003 GSVAAPRVARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQR ::::::::::: ::::::::::::::::::::::::: gi|165 MAAATLRDPAQ-GYVTFEDVAVYFSQEEWRLLDDAQR 10 20 30 70 80 90 100 110 FLJ003 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILR-VWLRNRSAN :::::::::::::::::::::::::::::::::::::::::::::::::: : gi|165 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILRGSWQGAKAEA 40 50 60 70 80 90 120 130 140 FLJ003 LLTQIFFPNRQPQVAPEQGRE gi|165 AAEQSASVEVPSSNVQQHQKQHCGEKPLKRQEGRVPVLRSCRVHLSEKSLQSREVGKDLL 100 110 120 130 140 150 >>gi|194385970|dbj|BAG65360.1| unnamed protein product [ (497 aa) initn: 536 init1: 486 opt: 533 Z-score: 688.5 bits: 135.1 E(): 1.2e-29 Smith-Waterman score: 533; 94.444% identity (95.556% similar) in 90 aa overlap (24-112:1-89) 10 20 30 40 50 60 FLJ003 GSVAAPRVARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQR ::::.:::::: ::::::::::::::::::::::::: gi|194 MAAAALRDPAQ-GYVTFEDVAVYFSQEEWRLLDDAQR 10 20 30 70 80 90 100 110 FLJ003 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILR-VWLRNRSAN :::::::::::::::::::::::::::::::::::::::::::::::: : : gi|194 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAIPRGCWHGAEAEE 40 50 60 70 80 90 120 130 140 FLJ003 LLTQIFFPNRQPQVAPEQGRE gi|194 APEQIASVGLLSSNIQQHQKQHCGEKPLKRQQGRVPVLRSCKVHLSEKSLQSREVGKALL 100 110 120 130 140 150 >>gi|148612865|ref|NP_001091963.1| zinc finger protein 4 (497 aa) initn: 536 init1: 486 opt: 533 Z-score: 688.5 bits: 135.1 E(): 1.2e-29 Smith-Waterman score: 533; 94.444% identity (95.556% similar) in 90 aa overlap (24-112:1-89) 10 20 30 40 50 60 FLJ003 GSVAAPRVARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQR ::::.:::::: ::::::::::::::::::::::::: gi|148 MAAAALRDPAQ-GYVTFEDVAVYFSQEEWRLLDDAQR 10 20 30 70 80 90 100 110 FLJ003 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILR-VWLRNRSAN :::::::::::::::::::::::::::::::::::::::::::::::: : : gi|148 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAIPRGCWHGAEAEE 40 50 60 70 80 90 120 130 140 FLJ003 LLTQIFFPNRQPQVAPEQGRE gi|148 APEQIASVGLLSSNIQQHQKQHCGEKPLKRQEGRVPVLRSCKVHLSEKSLQSREVGKALL 100 110 120 130 140 150 >>gi|221045700|dbj|BAH14527.1| unnamed protein product [ (497 aa) initn: 536 init1: 486 opt: 533 Z-score: 688.5 bits: 135.1 E(): 1.2e-29 Smith-Waterman score: 533; 94.444% identity (95.556% similar) in 90 aa overlap (24-112:1-89) 10 20 30 40 50 60 FLJ003 GSVAAPRVARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQR ::::.:::::: ::::::::::::::::::::::::: gi|221 MAAAALRDPAQ-GYVTFEDVAVYFSQEEWRLLDDAQR 10 20 30 70 80 90 100 110 FLJ003 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILR-VWLRNRSAN :::::::::::::::::::::::::::::::::::::::::::::::: : : gi|221 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAIPRGCWHGAEAEE 40 50 60 70 80 90 120 130 140 FLJ003 LLTQIFFPNRQPQVAPEQGRE gi|221 APEQIASVGLLSSNIQQHQKQHCGEKPLKRQQGRVPVLRSCKVHLSEKSLQSREVGKALL 100 110 120 130 140 150 >>gi|148612893|ref|NP_001091961.1| zinc finger protein 4 (511 aa) initn: 554 init1: 504 opt: 533 Z-score: 688.3 bits: 135.1 E(): 1.2e-29 Smith-Waterman score: 533; 87.368% identity (90.526% similar) in 95 aa overlap (19-112:9-103) 10 20 30 40 50 60 FLJ003 GSVAAPRVARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQR : :.:.:: : : .:::::::::::::::::::::::::: gi|148 MAAAALRDPAQVPVAADLLTDHEEQGYVTFEDVAVYFSQEEWRLLDDAQR 10 20 30 40 50 70 80 90 100 110 FLJ003 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILR-VWLRNRSAN :::::::::::::::::::::::::::::::::::::::::::::::: : : gi|148 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAIPRGCWHGAEAEE 60 70 80 90 100 110 120 130 140 FLJ003 LLTQIFFPNRQPQVAPEQGRE gi|148 APEQIASVGLLSSNIQQHQKQHCGEKPLKRQEGRVPVLRSCKVHLSEKSLQSREVGKALL 120 130 140 150 160 170 >>gi|119592910|gb|EAW72504.1| zinc finger protein 419, i (511 aa) initn: 554 init1: 504 opt: 533 Z-score: 688.3 bits: 135.1 E(): 1.2e-29 Smith-Waterman score: 533; 87.368% identity (90.526% similar) in 95 aa overlap (19-112:9-103) 10 20 30 40 50 60 FLJ003 GSVAAPRVARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQR : :.:.:: : : .:::::::::::::::::::::::::: gi|119 MAAAALRDPAQVPVAADLLTDHEEQGYVTFEDVAVYFSQEEWRLLDDAQR 10 20 30 40 50 70 80 90 100 110 FLJ003 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILR-VWLRNRSAN :::::::::::::::::::::::::::::::::::::::::::::::: : : gi|119 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAIPRGCWHGAEAEE 60 70 80 90 100 110 120 130 140 FLJ003 LLTQIFFPNRQPQVAPEQGRE gi|119 APEQIASVGLLSSNIQQHQKQHCGEKPLKRQQGRVPVLRSCKVHLSEKSLQSREVGKALL 120 130 140 150 160 170 >>gi|109126236|ref|XP_001093246.1| PREDICTED: similar to (441 aa) initn: 521 init1: 521 opt: 522 Z-score: 675.1 bits: 132.4 E(): 6.7e-29 Smith-Waterman score: 522; 87.778% identity (96.667% similar) in 90 aa overlap (24-112:1-90) 10 20 30 40 50 60 FLJ003 GSVAAPRVARALSSVVVSPPQAPMAAATLRDPAQQGYVTFEDVAVYFSQEEWRLLDDAQR ::.:.::::::::::::::::::::::::::::..:: gi|109 MAGAALRDPAQQGYVTFEDVAVYFSQEEWRLLDETQR 10 20 30 70 80 90 100 110 FLJ003 LLYRNVMLENFTLLASLGLASSKTHEITQLESWEEPFMPAWEVVTSAILR-VWLRNRSAN :::::::::::.:::::::::::::::::::::::::::::::.:::. . : gi|109 LLYRNVMLENFSLLASLGLASSKTHEITQLESWEEPFMPAWEVMTSALPKGCWHGAEAEE 40 50 60 70 80 90 120 130 140 FLJ003 LLTQIFFPNRQPQVAPEQGRE gi|109 APEQSASVGLCSSNVQQHQKHYGEKPLKRQEGRVPVLRSCRVHLSEKSLQSREVGKDLLT 100 110 120 130 140 150 140 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 12:55:33 2009 done: Fri Feb 27 12:59:34 2009 Total Scan time: 574.870 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]