# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh04774.fasta.huge -Q ../query/FLJ00363.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00363, 151 aa vs ./tmplib.10216 library 2210843 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.1558+/-0.00389; mu= 15.2919+/- 0.263 mean_var=83.1066+/-17.818, 0's: 0 Z-trim: 1 B-trim: 31 in 1/39 Lambda= 0.140688 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1439 ( 561 res) hg01641b ( 561) 98 28.7 0.49 FLJ00101 ( 294 res) as00101 ( 294) 87 26.0 1.6 KIAA1096 ( 1919 res) pf00402 (1919) 92 28.2 2.4 KIAA0170 ( 2090 res) ha02399 (2090) 89 27.6 3.8 KIAA1762 ( 1460 res) fh27937(revised) (1460) 86 26.8 4.7 KIAA0987 ( 1115 res) hk01713 (1115) 82 25.8 7 FLJ00059 ( 477 res) as00059 ( 477) 78 24.5 7.5 FLJ00379 ( 487 res) sj00523 ( 487) 78 24.5 7.6 FLJ00009 ( 540 res) as00009 ( 540) 78 24.6 8.1 FLJ00280 ( 440 res) sh01728 ( 440) 77 24.2 8.2 FLJ00085 ( 292 res) as00085 ( 292) 75 23.6 8.6 FLJ00100 ( 672 res) as00100 ( 672) 78 24.7 9.1 KIAA0777 ( 1171 res) hk05279 (1171) 80 25.4 9.6 FLJ00042 ( 452 res) as00042 ( 452) 76 24.1 9.6 FLJ00010 ( 772 res) as00010 ( 772) 78 24.8 9.9 KIAA0709 ( 1484 res) ah06501 (1484) 80 25.6 11 KIAA0434 ( 1571 res) hh02165 (1571) 80 25.6 11 KIAA1117 ( 1558 res) hj06748 (1558) 79 25.4 13 KIAA0478 ( 1253 res) hh05955 (1253) 78 25.1 13 KIAA1654 ( 91 res) fh10218 ( 91) 67 21.3 13 KIAA1018 ( 1040 res) hj06112 (1040) 77 24.8 14 KIAA1357 ( 836 res) fj01906 ( 836) 76 24.4 14 FLJ00263 ( 764 res) sj01530 ( 764) 75 24.2 15 KIAA0188 ( 899 res) ha02734 ( 899) 75 24.3 17 FLJ00352 ( 289 res) sh00608 ( 289) 70 22.6 17 FLJ00305 ( 789 res) sh05120 ( 789) 74 24.0 18 KIAA0775 ( 639 res) hk05255 ( 639) 73 23.7 18 KIAA0211 ( 1317 res) ha02768 (1317) 76 24.7 18 KIAA1113 ( 1131 res) hj06379(revised) (1131) 75 24.4 19 KIAA0796 ( 1876 res) hk06116s1 (1876) 77 25.1 19 KIAA0146 ( 918 res) ha03238 ( 918) 74 24.1 19 KIAA0416 ( 529 res) hh00236 ( 529) 71 23.1 21 KIAA0752 ( 334 res) hk04439 ( 334) 69 22.5 22 KIAA0970 ( 1151 res) hh13674 (1151) 74 24.2 22 KIAA0505 ( 200 res) hh00043 ( 200) 66 21.5 24 FLJ00281 ( 1495 res) sh01915 (1495) 74 24.4 25 KIAA1887 ( 967 res) fk02232 ( 967) 72 23.7 26 FLJ00287 ( 186 res) sh02562 ( 186) 65 21.3 27 FLJ00267 ( 1110 res) sj04085 (1110) 72 23.8 28 KIAA1156 ( 348 res) hh05667 ( 348) 67 22.1 29 KIAA1685 ( 1505 res) pf04287 (1505) 73 24.2 29 KIAA0708 ( 1753 res) hh01062b(revised) (1753) 73 24.3 32 KIAA0124 ( 682 res) ha01534 ( 682) 69 22.9 33 FLJ00247 ( 925 res) sj08552 ( 925) 70 23.3 34 KIAA1631 ( 1032 res) fh15959s1 (1032) 70 23.3 36 FLJ00018 ( 1430 res) as00018 (1430) 71 23.7 38 KIAA0298 ( 901 res) hf00341(revised) ( 901) 69 23.0 38 KIAA1687 ( 728 res) fh26020 ( 728) 68 22.7 39 KIAA0502 ( 144 res) hh00007 ( 144) 61 20.3 40 FLJ00037 ( 145 res) as00037 ( 145) 61 20.3 40 >>KIAA1439 ( 561 res) hg01641b (561 aa) initn: 98 init1: 47 opt: 98 Z-score: 111.9 bits: 28.7 E(): 0.49 Smith-Waterman score: 98; 30.769% identity (58.462% similar) in 65 aa overlap (20-84:380-440) 10 20 30 40 FLJ003 KGESELKMQKRRGRFWSRWRGAFQQPQQTAQWFAVGDGVDQKHRPVDTL ...:..:. . : ..: . :.:::: : KIAA14 GRSPGSGSQSSGWHEVEPGMPSPTTLKKSEKSGFSSPSPS-QTSSLGTAFTQHHRPVIT- 350 360 370 380 390 400 50 60 70 80 90 100 FLJ003 GSDGGPCLSASSLFPPPRNVQFHPTCQPLFMHPCMYTFFFVLRMPYLAKIPSLQNAPQRS : ..: . :.: : . .: : : :: . KIAA14 GPRASPHATPSTLHFPTSPIIQQP--GPYFSHPAIRYHPQETLKEFVQLVCPDAGQQAGQ 410 420 430 440 450 460 110 120 130 140 150 FLJ003 LLLVCSASLLHLLYHDDIFPVCLTCLHSLGKLVCLRNRQRSF KIAA14 VGFLNPNGSSQGKVHNPFLPTPMLPPPPPPPMARPVPLPVPDTKPPTTSTEGGAASPTSP 470 480 490 500 510 520 >>FLJ00101 ( 294 res) as00101 (294 aa) initn: 39 init1: 39 opt: 87 Z-score: 102.7 bits: 26.0 E(): 1.6 Smith-Waterman score: 87; 30.909% identity (58.182% similar) in 55 aa overlap (21-73:238-288) 10 20 30 40 FLJ003 KGESELKMQKRRGRFWSRWRGAFQQPQQTAQWFAVGDGVDQKHR--PVDT : :. . .:.:: ... . . :. : FLJ001 KVPRGYNYRAEVRKLIPQLQVLDEVPAAHTGPPAPPRLSQDWLAVKEAIKKGNGLPPLGT 210 220 230 240 250 260 50 60 70 80 90 100 FLJ003 LGSDGGPCLSASSLFPPPRNVQFHPTCQPLFMHPCMYTFFFVLRMPYLAKIPSLQNAPQR .. ::: .: : .:: :. :: FLJ001 AAAPGGP--TAESQLPPGRGP--HPRLLRNG 270 280 290 >>KIAA1096 ( 1919 res) pf00402 (1919 aa) initn: 81 init1: 51 opt: 92 Z-score: 99.7 bits: 28.2 E(): 2.4 Smith-Waterman score: 92; 30.986% identity (50.704% similar) in 71 aa overlap (1-66:1827-1893) 10 20 30 FLJ003 KGESELKMQKRRGRFWSRWRGAFQQPQQTA :.:...: ..: . : : :.. ::. KIAA10 LMSHARLPHVARGPCGSLSGVRGNQAQAALKAEQDMKAKQRAEVLQSTQR-FFSEQQQSK 1800 1810 1820 1830 1840 1850 40 50 60 70 80 FLJ003 QWFAVGDGVDQK-----HRPVDTLGSDGGPCLSASSLFPPPRNVQFHPTCQPLFMHPCMY : .: : :: .: .:: . : : ::: KIAA10 Q---IGGGKAQKVDSDSSKPPETLTDPPGVCQEKVEEKPPPAPSIATKPVRTGPIKPQAI 1860 1870 1880 1890 1900 1910 90 100 110 120 130 140 FLJ003 TFFFVLRMPYLAKIPSLQNAPQRSLLLVCSASLLHLLYHDDIFPVCLTCLHSLGKLVCLR KIAA10 KTEETKS >>KIAA0170 ( 2090 res) ha02399 (2090 aa) initn: 65 init1: 65 opt: 89 Z-score: 96.0 bits: 27.6 E(): 3.8 Smith-Waterman score: 89; 30.303% identity (57.576% similar) in 66 aa overlap (21-82:742-800) 10 20 30 40 FLJ003 KGESELKMQKRRGRFWSRWRGAFQQPQQT--AQWFAVGDGVDQKHRPVDT :....: .. .: : . .. :.. .: :: KIAA01 VQSMEDEPTQAFMLTPPQELGPSHCSFQTTGTLDEPWEVLATQPFCLRESEDSETQPFDT 720 730 740 750 760 770 50 60 70 80 90 100 FLJ003 LGSDGGPCLSASSLFPPPRNV--QFHPTCQPLFMHPCMYTFFFVLRMPYLAKIPSLQNAP ::::: ::: . . :: .:. .: KIAA01 HLEAYGPCLS------PPRAIPGDQHPE-SPVHTEPMGIQGRGRQTVDKVMGIPKETAER 780 790 800 810 820 110 120 130 140 150 FLJ003 QRSLLLVCSASLLHLLYHDDIFPVCLTCLHSLGKLVCLRNRQRSF KIAA01 VGPERGPLERETEKLLPERQTDVTGEEELTKGKQDREQKQLLARDTQRQESDKNGESASP 830 840 850 860 870 880 >>KIAA1762 ( 1460 res) fh27937(revised) (1460 aa) initn: 65 init1: 65 opt: 86 Z-score: 94.3 bits: 26.8 E(): 4.7 Smith-Waterman score: 86; 29.730% identity (51.351% similar) in 111 aa overlap (4-112:157-253) 10 20 30 FLJ003 KGESELKMQKRRG-RFWSRWRGAFQQPQQTAQW : :.. . :: . :. .: .. .. . KIAA17 TTTAATDKPFKCTVCRVSYNQSSTLEIHMRSVLHQTRSRGTKTDSKIEGPERSQEEPKEG 130 140 150 160 170 180 40 50 60 70 80 90 FLJ003 FAVGDGVDQKHRPVDTLGSDGG-PCLSASSLFPPPRNVQFHPTCQPLFMHPCMYTFFFVL . :. .:. : :: : .: : :: ::: ...: ::: : . : .: KIAA17 ETEGEVGTEKKGP-DTSGFISGLPFLS-----PPPPPLDLHRFPAPLFTPPVLPPFPLV- 190 200 210 220 230 100 110 120 130 140 150 FLJ003 RMPYLAKIPSLQNAPQRSLLLVCSASLLHLLYHDDIFPVCLTCLHSLGKLVCLRNRQRSF : :: . :..::: KIAA17 --P-----ESLLKLQQQQLLLPFYLHDLKVGPKLTLAGPAPVLSLPAATPPPPPQPPKAE 240 250 260 270 280 290 >>KIAA0987 ( 1115 res) hk01713 (1115 aa) initn: 40 init1: 40 opt: 82 Z-score: 91.2 bits: 25.8 E(): 7 Smith-Waterman score: 82; 28.750% identity (57.500% similar) in 80 aa overlap (22-95:600-676) 10 20 30 40 50 FLJ003 KGESELKMQKRRGRFWSRWRGAFQQPQQTAQWFAVGDGVDQKHRPVDTLGS ::. :::.. .. . : . .: . KIAA09 YEPSRAEHLPGEPALDSDGPGRPYLGDQDVAFSYRQQTGKGTTLFSFSLQLPESFPSLLD 570 580 590 600 610 620 60 70 80 90 100 FLJ003 DGG----PCLSASSLFPPPRNVQFH-PTCQPLFMHPC-MYTFFFVLRMPYLAKIPSLQNA : : : :: ..:.: ...: . : .: .. :: .. :::.: . KIAA09 DDGYLSFPNLSETNLLP--QSLQHYLPIRSPSLV-PCFLFIFFFLLSASFSVPYALTLSF 630 640 650 660 670 680 110 120 130 140 150 FLJ003 PQRSLLLVCSASLLHLLYHDDIFPVCLTCLHSLGKLVCLRNRQRSF KIAA09 PLALCLCYLEPKAASLSASLDNDPSDSSEEETDSERTDTAADGETTATESDQEEDAELKA 690 700 710 720 730 740 >>FLJ00059 ( 477 res) as00059 (477 aa) initn: 57 init1: 57 opt: 78 Z-score: 90.7 bits: 24.5 E(): 7.5 Smith-Waterman score: 78; 30.435% identity (52.174% similar) in 92 aa overlap (45-132:213-294) 20 30 40 50 60 70 FLJ003 FWSRWRGAFQQPQQTAQWFAVGDGVDQKHRPVDTLGSDGGPCLSASSLFPPPRNVQFHPT :.:. ..: :: .:::::: : FLJ000 GGMKPNTLVLGFYDDAPPQDHFLTDPAFSEPADSTREGSSPALS--TLFPPPRA----PG 190 200 210 220 230 80 90 100 110 120 130 FLJ003 CQPLFMHPCMY--TFFFVLRMPYLAKIPSLQNA--PQRSLLLVCSASLLHLLYHDDIFPV .: ..: : : .:.: . . ..: :.: ..: :: : :..:. FLJ000 -SPRALNPQDYVATVADALKMNKNVVLARASGALPPERLSRGSGGTSQLH---HVDVWPL 240 250 260 270 280 290 140 150 FLJ003 CLTCLHSLGKLVCLRNRQRSF : FLJ000 NLLRPRGGPGYVDVCGLFLLQMATILGMVPAWHSARLRIFLCLGPREAPGAAEGRLRALL 300 310 320 330 340 350 >>FLJ00379 ( 487 res) sj00523 (487 aa) initn: 57 init1: 57 opt: 78 Z-score: 90.6 bits: 24.5 E(): 7.6 Smith-Waterman score: 78; 30.435% identity (52.174% similar) in 92 aa overlap (45-132:276-357) 20 30 40 50 60 70 FLJ003 FWSRWRGAFQQPQQTAQWFAVGDGVDQKHRPVDTLGSDGGPCLSASSLFPPPRNVQFHPT :.:. ..: :: .:::::: : FLJ003 GGMKPNTLVLGFYDDAPPQDHFLTDPAFSEPADSTREGSSPALS--TLFPPPRA----PG 250 260 270 280 290 80 90 100 110 120 130 FLJ003 CQPLFMHPCMY--TFFFVLRMPYLAKIPSLQNA--PQRSLLLVCSASLLHLLYHDDIFPV .: ..: : : .:.: . . ..: :.: ..: :: : :..:. FLJ003 -SPRALNPQDYVATVADALKMNKNVVLARASGALPPERLSRGSGGTSQLH---HVDVWPL 300 310 320 330 340 350 140 150 FLJ003 CLTCLHSLGKLVCLRNRQRSF : FLJ003 NLLRPRGGPGYVDVCGLFLLQMATILGMVPAWHSARLRIFLCLGPREAPGAAEGRLRALV 360 370 380 390 400 410 >>FLJ00009 ( 540 res) as00009 (540 aa) initn: 57 init1: 57 opt: 78 Z-score: 90.1 bits: 24.6 E(): 8.1 Smith-Waterman score: 78; 30.435% identity (52.174% similar) in 92 aa overlap (45-132:276-357) 20 30 40 50 60 70 FLJ003 FWSRWRGAFQQPQQTAQWFAVGDGVDQKHRPVDTLGSDGGPCLSASSLFPPPRNVQFHPT :.:. ..: :: .:::::: : FLJ000 GGMKPNTLVLGFYDDAPPQDHFLTDPAFSEPADSTREGSSPALS--TLFPPPRA----PG 250 260 270 280 290 80 90 100 110 120 130 FLJ003 CQPLFMHPCMY--TFFFVLRMPYLAKIPSLQNA--PQRSLLLVCSASLLHLLYHDDIFPV .: ..: : : .:.: . . ..: :.: ..: :: : :..:. FLJ000 -SPRALNPQDYVATVADALKMNKNVVLARASGALPPERLSRGSGGTSQLH---HVDVWPL 300 310 320 330 340 350 140 150 FLJ003 CLTCLHSLGKLVCLRNRQRSF : FLJ000 NLLRPRGGPGYVDVCGLFLLQMATILGMVPAWHSARLRIFLCLGPREAPGAAEGRLRALL 360 370 380 390 400 410 >>FLJ00280 ( 440 res) sh01728 (440 aa) initn: 62 init1: 62 opt: 77 Z-score: 89.9 bits: 24.2 E(): 8.2 Smith-Waterman score: 77; 28.846% identity (50.000% similar) in 52 aa overlap (32-81:8-56) 10 20 30 40 50 FLJ003 GESELKMQKRRGRFWSRWRGAFQQPQQTAQWFAVGDGVDQKHRPVDTLGSDGG--PCLSA : .::. . : . : :: FLJ002 VARPRWGWGCHADGTRTRTLPPPGILRTPGTLPC--- 10 20 30 60 70 80 90 100 110 FLJ003 SSLFPPPRNVQFHPTCQPLFMHPCMYTFFFVLRMPYLAKIPSLQNAPQRSLLLVCSASLL . .::::. .. : .::. : FLJ002 PGTLPPPRTHSYLPGHSPLLGHTPTSRDTPPSRNTLPPPWMLPSPRTLPSPRTLPSPRTL 40 50 60 70 80 90 151 residues in 1 query sequences 2210843 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:01:53 2009 done: Fri Feb 27 11:01:53 2009 Total Scan time: 0.330 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]