# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh05016.fasta.huge -Q ../query/FLJ00303.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00303, 370 aa vs ./tmplib.10216 library 2210624 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.6155+/-0.00346; mu= 20.9121+/- 0.233 mean_var=73.1677+/-16.220, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.149939 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0908 ( 506 res) hk10449 ( 506) 875 198.2 9.8e-52 KIAA0349 ( 1275 res) hg01561 (1275) 88 28.6 2.8 KIAA1545 ( 968 res) fj14026s1 ( 968) 87 28.2 2.9 KIAA0258 ( 410 res) ha07053 ( 410) 80 26.1 5.1 KIAA0250 ( 1122 res) ha02790 (1122) 82 27.2 6.5 KIAA1683 ( 832 res) fh24307 ( 832) 80 26.6 7.5 KIAA0189 ( 1132 res) ha02928 (1132) 81 27.0 7.6 FLJ00243 ( 503 res) sj07676 ( 503) 78 25.8 7.7 KIAA1468 ( 985 res) fj01719 ( 985) 80 26.7 8.2 FLJ00364 ( 601 res) sh04977 ( 601) 78 25.9 8.5 KIAA1170 ( 838 res) hg04224(revised) ( 838) 78 26.2 10 KIAA0132 ( 637 res) ha01449s1 ( 637) 77 25.8 10 KIAA1048 ( 897 res) hh02560 ( 897) 78 26.2 11 KIAA0675 ( 1217 res) hk02566 (1217) 79 26.6 11 KIAA0474 ( 782 res) fj12051 ( 782) 76 25.7 13 KIAA1568 ( 1380 res) fh22308 (1380) 78 26.5 13 KIAA0757 ( 534 res) hk04606 ( 534) 74 25.0 15 KIAA1707 ( 756 res) fj17662 ( 756) 75 25.4 15 KIAA1417 ( 1379 res) fh14782 (1379) 77 26.3 15 FLJ00026 ( 1180 res) as00026 (1180) 76 26.0 17 KIAA0351 ( 590 res) hg01609 ( 590) 73 24.8 18 KIAA0935 ( 952 res) af13188 ( 952) 74 25.4 20 KIAA1049 ( 550 res) hh02614a ( 550) 72 24.6 20 KIAA0791 ( 1357 res) hk05655 (1357) 75 25.8 21 KIAA0050 ( 796 res) ha01557 ( 796) 73 25.0 21 KIAA0443 ( 1404 res) pj00552 (1404) 75 25.9 21 KIAA0956 ( 672 res) hj05590 ( 672) 72 24.7 22 KIAA0299 ( 1907 res) hf00368 (1907) 75 26.1 25 KIAA1813 ( 673 res) ph00819b ( 673) 71 24.5 26 KIAA2031 ( 515 res) ef03841 ( 515) 70 24.1 26 KIAA0973 ( 1583 res) hj06871 (1583) 74 25.7 26 KIAA1131 ( 2168 res) pf08614 (2168) 75 26.1 27 KIAA0970 ( 1151 res) hh13674 (1151) 72 25.1 29 KIAA1973 ( 1176 res) pf00154 (1176) 72 25.1 30 FLJ00176 ( 403 res) sj00934 ( 403) 68 23.5 30 KIAA1491 ( 757 res) fj08187 ( 757) 70 24.4 32 KIAA1886 ( 655 res) fk01837 ( 655) 69 24.1 34 KIAA1524 ( 884 res) fj00637(revised) ( 884) 70 24.5 34 KIAA0906 ( 923 res) hk10347 ( 923) 70 24.5 35 FLJ00315 ( 925 res) sh06842 ( 925) 70 24.5 35 FLJ00121 ( 448 res) sh00381 ( 448) 67 23.4 37 FLJ00172 ( 1125 res) sj00125 (1125) 70 24.6 39 KIAA0084 ( 648 res) ha02022 ( 648) 68 23.8 39 FLJ00175 ( 1516 res) sj00758 (1516) 71 25.0 40 KIAA1728 ( 1644 res) pg00239 (1644) 71 25.1 41 KIAA1240 ( 733 res) fh10357 ( 733) 68 23.9 42 KIAA0995 ( 1014 res) hk07740 (1014) 69 24.3 43 KIAA1069 ( 787 res) hj05486 ( 787) 68 24.0 44 KIAA0044 ( 484 res) ha00492 ( 484) 66 23.2 45 KIAA1235 ( 1485 res) fh08704 (1485) 70 24.8 46 >>KIAA0908 ( 506 res) hk10449 (506 aa) initn: 791 init1: 421 opt: 875 Z-score: 1022.2 bits: 198.2 E(): 9.8e-52 Smith-Waterman score: 875; 42.120% identity (71.347% similar) in 349 aa overlap (33-370:166-506) 10 20 30 40 50 60 FLJ003 PGGPPRHYNPGAGGQAKSLPAQGLQLYVSSRIYKYQAHGYAFSGVEELLYSLGESTFVNM :::.::.: ::::.::.::..:: . :..: KIAA09 IINVIKLVWRYGFQFLRMHMWVEDVLDKFMRIYRYQSHDYAFSSVEKLLHALGGDDFLGM 140 150 160 170 180 190 70 80 90 100 110 120 FLJ003 TQHSVAESLLQVGVTQRFIDDVVSAVLRASYGQSAAMPAFAGAMSLAGAQGSLWSVEGGN .... :.: ..: ...:...... :.:..::::. . ::.::.::. ....::.::::: KIAA09 LNRTLLETLQKAGFSEKFLNEMIAPVMRVNYGQSTDINAFVGAVSLSCSDSGLWAVEGGN 200 210 220 230 240 250 130 140 150 160 170 FLJ003 KLVCSGLLKLTKANVIHATVTSV-----TLHSTEGKALYQVAYENEVGNSSDFYDIVVIA ::::::::. .:.:.: ..: . : .. . .:.:.:. . . :::::::..: KIAA09 KLVCSGLLQASKSNLISGSVMYIEEKTKTKYTGNPTKMYEVVYQIGTETRSDFYDIVLVA 260 270 280 290 300 310 180 190 200 210 220 230 FLJ003 TPLHLDNSSSNLTFAGFHPPIDDVQGSFQPTVVSLVPGYLNSSYFGFPDPKLFPFANILT :: :. . ::.:: .: :::.. . .: :..:: : ::.: :. : . ..:: KIAA09 TP--LNRKMSNITFLNFDPPIEEFHQYYQHIVTTLVKGELNTSIFSSRPIDKFGLNTVLT 320 330 340 350 360 370 240 250 260 270 280 290 FLJ003 TDFPSFFCTLDNICPVNISASFRRKQPQEAA-----VWRVQSPKPLFRTQLKTLFRSY-Y :: ..: : ..: : :.:. : . ::.. : . : ..:. :: :: : KIAA09 TDNSDLF-----INSIGIVPSVREKEDPEPSTDGTYVWKIFSQETLTKAQILKLFLSYDY 380 390 400 410 420 300 310 320 330 340 350 FLJ003 SVQTAEWQAHPLYGSPPTLPRFALHDQLFYLNALEWAASSVEVMAVAAKNVALLAYNRWY .:. : :.: : : : . :::.:.:::..: :::..:. :.::.:.:::::.:: KIAA09 AVKKP-WLAYPHYKPPEKCPSIILHDRLYYLNGIECAASAMEMSAIAAHNAALLAYHRWN 430 440 450 460 470 480 360 370 FLJ003 QDLDKIDQKDLMHKVKTEL : ::: :..:.:::: KIAA09 GHTDMIDQDGLYEKLKTEL 490 500 >>KIAA0349 ( 1275 res) hg01561 (1275 aa) initn: 89 init1: 63 opt: 88 Z-score: 98.2 bits: 28.6 E(): 2.8 Smith-Waterman score: 88; 33.784% identity (54.054% similar) in 74 aa overlap (179-245:879-949) 150 160 170 180 190 200 FLJ003 STEGKALYQVAYENEVGNSSDFYDIVVIATPLHLDNSSSNLT-FAGFH---PPIDDVQGS : .::. .:: ::. : .. ::: KIAA03 PIMCWGSCAYTIQSIERILSDEDKPLFGPLPCRLDDCLRSLTRFAAAHWTVASVSVVQGH 850 860 870 880 890 900 210 220 230 240 250 260 FLJ003 FQPTVVSLVPGYLNSSYFGFP---DPKLFPFANILTTDFPSFFCTLDNICPVNISASFRR : .:::: :.:. .: : .: . :. ::.. : KIAA03 FCKLFASLVP---NDSHEELPCILDIDMFHLLVGLVLAFPALQCQDFSGISLGTGDLHIF 910 920 930 940 950 960 270 280 290 300 310 320 FLJ003 KQPQEAAVWRVQSPKPLFRTQLKTLFRSYYSVQTAEWQAHPLYGSPPTLPRFALHDQLFY KIAA03 HLVTMAHIIQILLTSCTEENGMDQENPPCEEESAVLALYKTLHQYTGSALKEIPSGWHLW 970 980 990 1000 1010 1020 >>KIAA1545 ( 968 res) fj14026s1 (968 aa) initn: 65 init1: 65 opt: 87 Z-score: 98.2 bits: 28.2 E(): 2.9 Smith-Waterman score: 87; 26.984% identity (52.381% similar) in 126 aa overlap (195-314:437-561) 170 180 190 200 210 220 FLJ003 GNSSDFYDIVVIATPLHLDNSSSNLTFAGFHP-PIDDVQGSFQPTVVSLVPGYLNSS--Y :: :. ..::.::: : . . .. : . KIAA15 KLDSPYFRHSSVSFFPSFPPAIPGLPTLLPHPGPFGSLQGAFQPKVSDPYRAVVKVSTCW 410 420 430 440 450 460 230 240 250 260 270 FLJ003 FG-FPDPKLFPFANIL-TTDFPSFFCTLDNICPVNISASFRRKQPQEAAVWRVQSPKPLF : . : : . . : :. : .. :. .:::. ..: . . .:: .. KIAA15 EGPWQGRTLVPPGRPRGARDSRSLQKTWVGVAPAPLSASILSQKPGRWCAVHVQIAWQIY 470 480 490 500 510 520 280 290 300 310 320 330 FLJ003 RTQLKTLFRSYYSVQTAEWQAH-PLYGSPPTLPRFALHDQLFYLNALEWAASSVEVMAVA : : : . . . . : :. :.: ::. :: KIAA15 RHQQK-IKEMQLDPHKLEVGAKLDLFGRPPAPGVFAGFHYPQDLARPLFPSTGAAHPASN 530 540 550 560 570 580 340 350 360 370 FLJ003 AKNVALLAYNRWYQDLDKIDQKDLMHKVKTEL KIAA15 PFGPSAHPGSFLPTGPLTDPFSRPSTFGGLGSLSSHAFGGLGSHALAPGGSIFAPKEGSS 590 600 610 620 630 640 >>KIAA0258 ( 410 res) ha07053 (410 aa) initn: 44 init1: 44 opt: 80 Z-score: 93.6 bits: 26.1 E(): 5.1 Smith-Waterman score: 80; 25.253% identity (55.556% similar) in 99 aa overlap (196-286:82-178) 170 180 190 200 210 220 FLJ003 NSSDFYDIVVIATPLHLDNSSSNLTFAGFHPPIDDVQGSFQP-TVVSLVP--GYLNSSYF :: :. : . :: . . ..: : .. . KIAA02 TATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCIL 60 70 80 90 100 110 230 240 250 260 270 FLJ003 GFPDPKLFPFANILTTDFPSFFCTLDNICPVNISASFRRKQPQEA-----AVWRVQSPKP . : ::.. : .. : . ... :.. ::: .. . . . ::.:: KIAA02 STP-PKIL-FCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTIGCQRVNSPIT 120 130 140 150 160 280 290 300 310 320 330 FLJ003 LFRTQLKTLFRSYYSVQTAEWQAHPLYGSPPTLPRFALHDQLFYLNALEWAASSVEVMAV :.:. :..: KIAA02 LLRVPLRVLVLTGLQDVRFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGERLMAATSCRS 170 180 190 200 210 220 >>KIAA0250 ( 1122 res) ha02790 (1122 aa) initn: 90 init1: 44 opt: 82 Z-score: 91.7 bits: 27.2 E(): 6.5 Smith-Waterman score: 82; 22.064% identity (47.687% similar) in 281 aa overlap (7-277:633-894) 10 20 30 FLJ003 WVPGGPPRHYNPGAGGQAKSLPAQGLQLYVSSRIYK : :. ::: : :. :: KIAA02 QTELRKTPVSEARKTPVTQTPTQASNSQFIPIHH-PGAFPPLPSRPGFPPPTYVIPPPVA 610 620 630 640 650 660 40 50 60 70 80 90 FLJ003 YQ-AHGYAF-SGVEELLYSLGESTFVNMTQHSVAESLLQVGVTQR--FIDDVVSAVLRAS .. . ::.: .:: .::.. : :: : . .:.: .. . .. :. . KIAA02 FSMGSGYTFPAGVSV------PGTFLQPTAHSPAGNQVQAGKQSHIPYSQQRPSGPGPMN 670 680 690 700 710 100 110 120 130 140 150 FLJ003 YGQSAAMPAFAGAMSLAGAQGSLWSVEGGNKLVCSGLLKLTKA--NVIHATVTSVTLHST : . ..: .. :: . :. ..: ..: . .. ... : : :: KIAA02 QGPQQSQPPSQQPLTSLPAQPTAQST---SQLQVQALTQQQQSPTKAVPALGKSPPHHS- 720 730 740 750 760 770 160 170 180 190 200 210 FLJ003 EGKALYQVAYENEVGNSSDFYDIVVIATPLHLDNSSSNLTFAGFHPPIDDVQGSFQPTVV : :: : :..... . :: .. . . :: . :.:: :. KIAA02 -GFQQYQQA-----DASKQLWNPPQVQGPLGKIMPVKQPYYLQTQDPIKLFEPSLQPPVM 780 790 800 810 820 220 230 240 250 260 FLJ003 SLVPGYLNSSYFGFP-DPKLFPFANILTTDF--PSFFCTLDNICPVNISASFRRKQPQEA . : :.... :: .: ... . .: : . :: . .:.. :. . KIAA02 QQQP--LEKKMKPFPMEPYNHNPSEVKVPEFYWDSSYSMADNRSVMAQQANIDRRGKRSP 830 840 850 860 870 880 270 280 290 300 310 320 FLJ003 AVWRV-QSPKPLFRTQLKTLFRSYYSVQTAEWQAHPLYGSPPTLPRFALHDQLFYLNALE ...: :.: : KIAA02 GIFRPEQDPVPRMPFEKSLLEKPSELMSHSSSFLSLTGFSLNQERYPNNSMFNEVYGKNL 890 900 910 920 930 940 >>KIAA1683 ( 832 res) fh24307 (832 aa) initn: 132 init1: 54 opt: 80 Z-score: 90.7 bits: 26.6 E(): 7.5 Smith-Waterman score: 109; 25.877% identity (48.684% similar) in 228 aa overlap (91-309:32-241) 70 80 90 100 110 FLJ003 NMTQHSVAESLLQVGVTQRFIDDVVSAVLRASYG-QSAAMPAFAGAMSLAGAQGSLWSVE :..: :. :.:.. .. . :: : .. KIAA16 QPSVVTRRSPSRGHPSRTFRVASDQGHQSMANWGSQNLAQPSMDSGEPSSLAQPS--QAP 10 20 30 40 50 120 130 140 150 160 170 FLJ003 GGNKLVCSGLLKLTKANVIHATVTSVTLHSTEGKALYQVAYENEVGNSSDFYDIVVIATP : : :.: . ..: . . . : : : .::. : . . .. : KIAA16 G----VTSNLAQPSQAFGVSPSPDYPSQSVGEYPMLAQPFQPTEVSPSPTYPSQAIREYP 60 70 80 90 100 110 180 190 200 210 220 230 FLJ003 -LHLDNSSSNLTFAGFHP-PIDDVQGS----FQPTVVSLVPGYLNSSYFGFPDPKLFPFA : . .... . :: . .:. : .::: :: ::::. . :.: .: . KIAA16 TLAQPFQPTEVSPSPAHPYQLTEVSPSAAYSYQPTEVSPNPGYLSMAIEMSPSPG-YPSV 120 130 140 150 160 170 240 250 260 270 280 290 FLJ003 NILTTDFPSFFCTLDNICPVNISASFRRKQPQEAAVWRVQSPKPLFRTQLKTLFRS--YY .. :.. :..:: : .: ::.: . .:: . : : KIAA16 ATEVSPSPTY-----PYQPTEISPS-----SGYLSVATEVSPSPGYPSQLTEVSPSSGYL 180 190 200 210 220 300 310 320 330 340 350 FLJ003 SVQTAEWQAHPLYGSPPTLPRFALHDQLFYLNALEWAASSVEVMAVAAKNVALLAYNRWY :: : : . : :.: :: KIAA16 SVAT-EVSPSPDYSSQPTEMSPSSGYLSMATEVSPSPGYPFQPTEVSPSPDYPCVATGES 230 240 250 260 270 280 >>KIAA0189 ( 1132 res) ha02928 (1132 aa) initn: 67 init1: 41 opt: 81 Z-score: 90.5 bits: 27.0 E(): 7.6 Smith-Waterman score: 81; 26.000% identity (56.000% similar) in 100 aa overlap (275-370:761-856) 250 260 270 280 290 300 FLJ003 CTLDNICPVNISASFRRKQPQEAAVWRVQSPKPLFRTQLKTLFRSYYSVQTAE-WQAHPL :.:.: ..: : : . :.. . : : KIAA01 MNETSPDNVCYEGQSAYDVADLLKQYFRDLPEPIFTSKLTTTFLQIYQLLPKDQWLAAAQ 740 750 760 770 780 790 310 320 330 340 350 360 FLJ003 YGSP--PTLPRFALHDQLFYLNALEWAASSVEVMAVAAKNVAL-LAYNRWYQDLDKIDQK .. : : .:. :..:. . .:.: ..: :.:. :: . .. ...: :. KIAA01 AATLLLPDENREVLQTLLYFLSDI----ASAEENQMTAGNLAVCLAPSIFHLNVSKKDSP 800 810 820 830 840 370 FLJ003 DLMHKVKTEL . : : : KIAA01 SPRIKSKRSLIGRPGPRDLSDNMAATQGLSHMISDCKKLFQVPQDMVLQLCSSYSAAELS 850 860 870 880 890 900 >>FLJ00243 ( 503 res) sj07676 (503 aa) initn: 45 init1: 45 opt: 78 Z-score: 90.4 bits: 25.8 E(): 7.7 Smith-Waterman score: 78; 28.947% identity (54.386% similar) in 114 aa overlap (164-277:187-284) 140 150 160 170 180 190 FLJ003 KANVIHATVTSVTLHSTEGKALYQVAYENEVGNSSDFYDIVVIATPLHLDNSSSNLTFAG :::: . .: . : : . :::.: . FLJ002 GSLPDLTNLHYSTPLPASLDTTDHHFGSMSVGNSVN--NIPAAMTHLGI-RSSSGLQSSR 160 170 180 190 200 210 200 210 220 230 240 250 FLJ003 FHPPIDDVQGSFQPTVVSLVPGYLNSSYFGFPDPKLFPFANILTTDFPSFFCTLDNICPV .: : :.... ::.: :: . :. .. : :. : .. : . .. . FLJ002 SNPSI---QATLNKTVLS-------SSLNNHPQTSV-PNASALHPSLRLFSLSNPSLSTT 220 230 240 250 260 260 270 280 290 300 310 FLJ003 NISASFRRKQPQEAAVWRVQSPKPLFRTQLKTLFRSYYSVQTAEWQAHPLYGSPPTLPRF :.:. ::.:: . . . :: : FLJ002 NLSGPSRRRQPPVSPL--TLSPGPEANQGFSRQLSSTSPLAPYPTSQMVSSDRSQLSFLP 270 280 290 300 310 320 >>KIAA1468 ( 985 res) fj01719 (985 aa) initn: 59 init1: 59 opt: 80 Z-score: 89.9 bits: 26.7 E(): 8.2 Smith-Waterman score: 82; 22.764% identity (53.659% similar) in 123 aa overlap (191-300:442-563) 170 180 190 200 210 220 FLJ003 ENEVGNSSDFYDIVVIATPLHLDNSSSNLTFAGFHPPIDDVQGSFQPTVVSLVPGYLNSS .:.. . ..:. . :... . : . KIAA14 YHQGFELLLSALGDPSERVVSATHQVFLPAYAAWTTELGNLQSHLILTLLNKIEKLLREG 420 430 440 450 460 470 230 240 250 260 270 FLJ003 YFGFPDPKLFPFANILTTDFPSFFCTLDNICPVNISASFRRKQPQEAAVWRVQSP-KPL- :. . :: . . : . .::.: . . : . .:... . :: : : : .:: KIAA14 EHGLDEHKLHMYLSALQSLIPSLFALVLQNAPFSSKAKLHGEVPQ-IEVTRFPRPMSPLQ 480 490 500 510 520 530 280 290 300 310 320 FLJ003 -------FRTQLKTLFRSY-YSVQ---TAEWQAHPLYGSPPTLPRFALHDQLFYLNALEW : :: .:.. : :... :. :.. KIAA14 DVSTIIGSREQLAVLLQLYDYQLEQEGTTGWESLLWVVNQLLPQLIEIVGKINVTSTACV 540 550 560 570 580 590 330 340 350 360 370 FLJ003 AASSVEVMAVAAKNVALLAYNRWYQDLDKIDQKDLMHKVKTEL KIAA14 HEFSRFFWRLCRTFGKIFTNTKVKPQFQEILRLSEENIDSSAGNGVLTKATVPIYATGVL 600 610 620 630 640 650 >>FLJ00364 ( 601 res) sh04977 (601 aa) initn: 45 init1: 45 opt: 78 Z-score: 89.7 bits: 25.9 E(): 8.5 Smith-Waterman score: 78; 28.947% identity (54.386% similar) in 114 aa overlap (164-277:285-382) 140 150 160 170 180 190 FLJ003 KANVIHATVTSVTLHSTEGKALYQVAYENEVGNSSDFYDIVVIATPLHLDNSSSNLTFAG :::: . .: . : : . :::.: . FLJ003 GSLPDLTNLHYSTPLPASLDTTDHHFGSMSVGNSVN--NIPAAMTHLGI-RSSSGLQSSR 260 270 280 290 300 310 200 210 220 230 240 250 FLJ003 FHPPIDDVQGSFQPTVVSLVPGYLNSSYFGFPDPKLFPFANILTTDFPSFFCTLDNICPV .: : :.... ::.: :: . :. .. : :. : .. : . .. . FLJ003 SNPSI---QATLNKTVLS-------SSLNNHPQTSV-PNASALHPSLRLFSLSNPSLSTT 320 330 340 350 360 260 270 280 290 300 310 FLJ003 NISASFRRKQPQEAAVWRVQSPKPLFRTQLKTLFRSYYSVQTAEWQAHPLYGSPPTLPRF :.:. ::.:: . . . :: : FLJ003 NLSGPSRRRQPPVSPL--TLSPGPEAHQGFSRQLSSTSPLAPYPTSQMVSSDRSQLSFLP 370 380 390 400 410 370 residues in 1 query sequences 2210624 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:21 2009 done: Fri Feb 27 10:51:21 2009 Total Scan time: 0.490 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]