# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh05134.fasta.huge -Q ../query/FLJ00365.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00365, 399 aa vs ./tmplib.10216 library 2210595 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.0166+/-0.00363; mu= 18.0189+/- 0.245 mean_var=74.4259+/-15.815, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40 Lambda= 0.148666 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00390 ( 322 res) sj04630 ( 322) 112 33.0 0.037 KIAA0882 ( 1291 res) hk07544s1 (1291) 103 31.9 0.32 KIAA1354 ( 632 res) fj01502 ( 632) 94 29.5 0.81 KIAA1395 ( 2051 res) hj07927s1 (2051) 95 30.4 1.4 KIAA0980 ( 1406 res) hj07083 (1406) 91 29.3 2 KIAA1514 ( 1598 res) fh00815(revised) (1598) 91 29.4 2.2 KIAA0595 ( 1666 res) hj02929s1 (1666) 91 29.4 2.2 FLJ00258 ( 792 res) sj09927 ( 792) 85 27.7 3.5 KIAA0024 ( 507 res) ha00556 ( 507) 81 26.6 4.9 KIAA0437 ( 1605 res) hj00203s1 (1605) 85 28.1 5.4 KIAA1710 ( 515 res) fj18457 ( 515) 79 26.2 6.6 KIAA0601 ( 886 res) hg00838a ( 886) 80 26.7 7.9 KIAA1324 ( 580 res) fh14139 ( 580) 76 25.6 11 FLJ00087 ( 674 res) as00087 ( 674) 76 25.7 12 KIAA1304 ( 1051 res) fh04032 (1051) 77 26.2 14 KIAA0113 ( 636 res) ha01652s1 ( 636) 74 25.2 16 KIAA0306 ( 1451 res) hg00063 (1451) 77 26.4 17 FLJ00263 ( 764 res) sj01530 ( 764) 74 25.3 18 KIAA0075 ( 174 res) ha01209 ( 174) 68 23.2 18 KIAA0399 ( 2982 res) hg00651s2 (2982) 79 27.2 19 FLJ00406 ( 261 res) sj08464 ( 261) 69 23.6 20 KIAA1352 ( 1212 res) fj01313 (1212) 75 25.8 20 KIAA0527 ( 768 res) hg02246 ( 768) 73 25.1 21 FLJ00326 ( 122 res) sj01834 ( 122) 65 22.3 23 FLJ00092 ( 369 res) as00092 ( 369) 69 23.8 24 KIAA0076 ( 1701 res) ha00936 (1701) 75 26.0 25 KIAA1786 ( 400 res) fh19009 ( 400) 69 23.9 25 KIAA1931 ( 514 res) fj14393 ( 514) 70 24.2 25 KIAA0429 ( 666 res) hk07754 ( 666) 71 24.6 25 KIAA1450 ( 1139 res) fh12401b (1139) 73 25.4 26 KIAA0728 ( 1637 res) fh22477 (1637) 74 25.8 28 KIAA1978 ( 384 res) fj03313 ( 384) 68 23.7 28 FLJ00037 ( 145 res) as00037 ( 145) 64 22.2 29 KIAA0095 ( 832 res) ha01471 ( 832) 71 24.7 29 KIAA0025 ( 422 res) ha00594 ( 422) 68 23.7 30 KIAA1458 ( 612 res) fh16694 ( 612) 69 24.1 32 KIAA0330 ( 2224 res) hg00894s1 (2224) 74 26.0 33 KIAA0731 ( 1096 res) hk03714 (1096) 71 24.9 34 KIAA0846 ( 691 res) hk05386 ( 691) 69 24.2 35 KIAA0150 ( 944 res) ha01348 ( 944) 70 24.6 36 KIAA1878 ( 453 res) pj01649 ( 453) 67 23.5 36 FLJ00357 ( 628 res) sh02980 ( 628) 68 23.9 38 KIAA1047 ( 2348 res) hh01221s1 (2348) 73 25.8 40 KIAA1022 ( 1131 res) fg00613 (1131) 70 24.7 40 KIAA0223 ( 1165 res) ha02995 (1165) 70 24.7 41 KIAA1183 ( 345 res) hg01641a ( 345) 65 22.9 42 FLJ00053 ( 443 res) as00053 ( 443) 66 23.3 42 KIAA0645 ( 1578 res) hj03630 (1578) 71 25.1 42 KIAA1132 ( 2092 res) hh01132s1 (2092) 72 25.5 43 KIAA0020 ( 647 res) ha00602 ( 647) 67 23.7 45 >>FLJ00390 ( 322 res) sj04630 (322 aa) initn: 57 init1: 57 opt: 112 Z-score: 132.1 bits: 33.0 E(): 0.037 Smith-Waterman score: 112; 26.415% identity (52.201% similar) in 159 aa overlap (195-344:148-298) 170 180 190 200 210 220 FLJ003 EALGVSVTDYTFEDCQLALAEGQLRLPADTCLLEFARLVRGLGLKPEKLEKDLDRYSERA :: . : ..::. .. ..::: . :. FLJ003 RTLGQTQASCPEPRPSMDAVDATMEKLRAQCLSRGASGIQGLA----RFFRQLDRDGSRS 120 130 140 150 160 170 230 240 250 260 270 280 FLJ003 RMKGGEKIGIAEFAASLEVPVSDLLEDMFSLFDESGSGEVDLRECVVALSVVCRPARTLD . :.:... :. . : . .:..::: .::.: . :: :: FLJ003 LDADEFRQGLAKLGLVLDQAEA---EGVCRKWDRNGSGTLDLEEFLRALRPPMSQAREA- 180 190 200 210 220 290 300 310 320 330 FLJ003 TIQLAFKMYGAQEDGSVGEGDLSCILK----TALGVAELTVTDLFR----AIDQEEK-GK .: :: . :: : :: . . . .: : ...: .:. :: :. FLJ003 VIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLRRFLDNFDSSEKDGQ 230 240 250 260 270 280 340 350 360 370 380 390 FLJ003 ITFADFHRFAEMYPAFAEEYLYPDQTHFESCAETSPAPIPNGFCADFSPENSDAGRKPVR .:.:.:. . FLJ003 VTLAEFQDYYSGVSASMNTDEEFVAMMTSAWQL 290 300 310 320 >>KIAA0882 ( 1291 res) hk07544s1 (1291 aa) initn: 68 init1: 64 opt: 103 Z-score: 115.2 bits: 31.9 E(): 0.32 Smith-Waterman score: 103; 35.714% identity (73.214% similar) in 56 aa overlap (246-300:912-966) 220 230 240 250 260 270 FLJ003 DLDRYSERARMKGGEKIGIAEFAASLEVPVSDLLED-MFSLFDESGSGEVDLRECVVALS ::.: . .:.:.::.:.. ...:: : .:: KIAA08 SLPYLEQYRIDFEQFKGMFALLFPWACGTHSDVLASRLFQLLDENGDSLINFREFVSGLS 890 900 910 920 930 940 280 290 300 310 320 330 FLJ003 VVCRPARTLDTIQLAFKMYGAQEDGSVGEGDLSCILKTALGVAELTVTDLFRAIDQEEKG ..:. : . ..: .::. : .: KIAA08 AACHGDLT-EKLKLLYKMHVLPEPSSDQDEPDSAFEATQYFFEDITPECTHVVGLDSRSK 950 960 970 980 990 1000 >>KIAA1354 ( 632 res) fj01502 (632 aa) initn: 85 init1: 85 opt: 94 Z-score: 108.0 bits: 29.5 E(): 0.81 Smith-Waterman score: 94; 26.316% identity (52.632% similar) in 57 aa overlap (49-105:573-629) 20 30 40 50 60 70 FLJ003 KAESRDIPIWGTLIQYIRPVFVSRSDQDSRRKTVEEIKRRAQSNGKWPQIMIFPEGTCTN : :: ... . .: ... .::. KIAA13 IAAMLRGQSDVGVAVFENKIYVVGGYSWNNRCMVEIVQKYDPEKDEWHKVFDLPESLGGI 550 560 570 580 590 600 80 90 100 110 120 130 FLJ003 RTCLITFKPGAFIPGAPVQPVVLRYPNKLDTITWTWQGPGALEILWLTLCQFHNQVEIEF :.: .: : ::.: . : :. KIAA13 RACTLTVFPPEENPGSPSRESPLSAPSDHS 610 620 630 >>KIAA1395 ( 2051 res) hj07927s1 (2051 aa) initn: 42 init1: 42 opt: 95 Z-score: 103.7 bits: 30.4 E(): 1.4 Smith-Waterman score: 95; 30.851% identity (57.447% similar) in 94 aa overlap (294-385:436-518) 270 280 290 300 310 320 FLJ003 VDLRECVVALSVVCRPARTLDTIQLAFKMYGAQEDGSVGEGDLSCILKTALGVAELTVTD : :. .: :: .: . ... : ::::. KIAA13 ANIVSSAGQLDRDSDSEGERRPAWTDRRRRGPQDRAS--SGDDACSF-SGFRPATLTVTN 410 420 430 440 450 460 330 340 350 360 370 380 FLJ003 LFRAIDQEEKGKITFADFHRF-AEMY-PAFAEEYLYPDQTHFESCAETSPAPIPNGFCAD .:. .: ... :. .: :.: :. . : : .... . :::: :: KIAA13 FFK----QEAERLSDEDLFKFLADMRRPSSLLRRLRPVTAQLK--IDISPAPENPHFC-- 470 480 490 500 510 390 FLJ003 FSPENSDAGRKPVRKKLD .::: KIAA13 LSPELLHIKPYPDPRGRPTKEILEFPAREVYAPHTSYRNLLYVYPHSLNFSSRQGSVRNL 520 530 540 550 560 570 >>KIAA0980 ( 1406 res) hj07083 (1406 aa) initn: 90 init1: 65 opt: 91 Z-score: 100.8 bits: 29.3 E(): 2 Smith-Waterman score: 95; 24.561% identity (55.263% similar) in 114 aa overlap (240-342:172-283) 210 220 230 240 250 260 FLJ003 PEKLEKDLDRYSERARMKGGEKIGIAEFAASLEVPVSD-----LLEDMFSLFDESGSGEV :.: : :: : . ::. .:. .. KIAA09 CDAATEARRVPEQQTQASLKSHLWRSASLESVESPKSDEEAESTKEAQNELFEAQGQLQT 150 160 170 180 190 200 270 280 290 300 310 FLJ003 DLRECVVALSVVCRPARTLDT----IQLAFKMYGAQEDGSVGEGDLSCILKTA--LGVAE : . . : : ..:: :. ... :. .: ..: .:. . ... :. . KIAA09 WDSEDFGSPQKSCSP--SFDTPESQIRGVWEELGVGSSGHLSEQELAVVCQSVGLQGLEK 210 220 230 240 250 320 330 340 350 360 370 FLJ003 LTVTDLFRAIDQEEKGKITFADFHRFAEMYPAFAEEYLYPDQTHFESCAETSPAPIPNGF . ::: .::. ::... .:. KIAA09 EELEDLFNKLDQDGDGKVSLEEFQLGLFSHEPALLLESSTRVKPSKAWSHYQVPEESGCH 260 270 280 290 300 310 >>KIAA1514 ( 1598 res) fh00815(revised) (1598 aa) initn: 73 init1: 67 opt: 91 Z-score: 100.3 bits: 29.4 E(): 2.2 Smith-Waterman score: 91; 36.111% identity (58.333% similar) in 36 aa overlap (83-118:1493-1527) 60 70 80 90 100 110 FLJ003 EEIKRRAQSNGKWPQIMIFPEGTCTNRTCLITFKPGAFIPGAPVQPVVLRYPNKLDTITW .: :: :: : :...:: . . .: : KIAA15 LKVKDLAEGVTYRFRIRAKTFTYGPEIEANVTTGPGEGAPGPPGVPIIVRYSSAI-AIHW 1470 1480 1490 1500 1510 1520 120 130 140 150 160 170 FLJ003 TWQGPGALEILWLTLCQFHNQVEIEFLPVYSPSEEEKRNPALYASNVRRVMAEALGVSVT . :: KIAA15 SSGDPGKGPITRYVIEARPSGAPRPAGLRPHSSLSPFFLGPSTWGTCLCPPPEKALVLLQ 1530 1540 1550 1560 1570 1580 >>KIAA0595 ( 1666 res) hj02929s1 (1666 aa) initn: 66 init1: 41 opt: 91 Z-score: 100.1 bits: 29.4 E(): 2.2 Smith-Waterman score: 91; 28.571% identity (53.571% similar) in 84 aa overlap (36-117:751-826) 10 20 30 40 50 60 FLJ003 AIPVTMTMSSIVMKAESRDIPIWGTLIQYIRPVFVSRSDQDSRRKTVEEIKRRAQS-NGK ::. .:. . ... .: .: : .:: KIAA05 PKTIIPEVKEVVDSLKIESGTSATTHEARPRPLSLSEYRRRRQQRQAETEERSPQPPTGK 730 740 750 760 770 780 70 80 90 100 110 120 FLJ003 WPQIMIFPEGTCTNRTCLITFKPGAFIPGAPVQPVVL-RYPNKLDTITWTWQGPGALEIL ::.. : : .. ::. :: ::.. ..: : :. : . :: KIAA05 WPSLPETPTGL-ADIPCLV-------IPPAPAKKTALQRSPETPLEICLVPVGPSPASPS 790 800 810 820 830 130 140 150 160 170 180 FLJ003 WLTLCQFHNQVEIEFLPVYSPSEEEKRNPALYASNVRRVMAEALGVSVTDYTFEDCQLAL KIAA05 PEPPVSKPVASSPTEQVPSQEMPLLARPSPPVQSVSPAVPTPPSMSAALPFPAGGLGMPP 840 850 860 870 880 890 >>FLJ00258 ( 792 res) sj09927 (792 aa) initn: 79 init1: 79 opt: 85 Z-score: 96.6 bits: 27.7 E(): 3.5 Smith-Waterman score: 85; 44.444% identity (69.444% similar) in 36 aa overlap (131-166:749-784) 110 120 130 140 150 160 FLJ003 LRYPNKLDTITWTWQGPGALEILWLTLCQFHNQVEIEFLPVYSPSEEEKRNPALYASNVR .:.: . ::: :: .::.:.. ::: FLJ002 ERLQQSLAGGPALGLSVSSKPKSGETANKPQNSVPEQPLPVNCVSELRKRSPSIVASNQG 720 730 740 750 760 770 170 180 190 200 210 220 FLJ003 RVMAEALGVSVTDYTFEDCQLALAEGQLRLPADTCLLEFARLVRGLGLKPEKLEKDLDRY ::. .: FLJ002 RVLQKAKEWEMKKT 780 790 >>KIAA0024 ( 507 res) ha00556 (507 aa) initn: 65 init1: 41 opt: 81 Z-score: 94.0 bits: 26.6 E(): 4.9 Smith-Waterman score: 81; 27.397% identity (58.904% similar) in 73 aa overlap (276-343:1-73) 250 260 270 280 290 300 FLJ003 SDLLEDMFSLFDESGSGEVDLRECVVALSVVCRPARTLDTIQL----AFKMYGAQEDGSV .:::: .: . ::. .: .. : . KIAA00 LCRPAISLLWLVTPGVPAFSGWGRRHRGRT 10 20 30 310 320 330 340 350 360 FLJ003 GEGDL-SCILKTALGVAELTVTDLFRAIDQEEKGKITFADFHRFAEMYPAFAEEYLYPDQ :. . ::. . .:. ... :: :.... ::. :.: KIAA00 GRRAMASCVGSRTLSKDDVNYKMHFRMINEQQVEDITIDFFYRPHTITLLSFTIVSLMYF 40 50 60 70 80 90 370 380 390 FLJ003 THFESCAETSPAPIPNGFCADFSPENSDAGRKPVRKKLD KIAA00 AFTRDDSVPEDNIWRGILSVIFFFLIISVLAFPNGPFTRPHPALWRMVFGLSVLYFLFLV 100 110 120 130 140 150 >>KIAA0437 ( 1605 res) hj00203s1 (1605 aa) initn: 77 init1: 50 opt: 85 Z-score: 93.3 bits: 28.1 E(): 5.4 Smith-Waterman score: 85; 25.984% identity (49.606% similar) in 127 aa overlap (72-194:801-918) 50 60 70 80 90 100 FLJ003 RSDQDSRRKTVEEIKRRAQSNGKWPQIMIFPEGTCTNRTCLITFKPGAFIPGAPVQPVVL : .: :: . : :. :. :.. . KIAA04 PSNFQSLVASSPAAMHPLSTQLGGSNGNLSPASTETNFSELKTM-PNL----QPISALPT 780 790 800 810 820 110 120 130 140 150 FLJ003 RYPNKLDTITWTWQGPGALEILWLTLCQFHNQVEIEFLPVYSPSEEEKRNPALYA----S . . . . :: . : . ::.. . :: . :: : :. :. :. . . KIAA04 KTQKGIHSGTWKLSPPRLMANSPSHLCEIGSLKEITLSPV-SESHSEETIPSDSGIGTDN 830 840 850 860 870 880 160 170 180 190 200 210 FLJ003 NVRRVMAEALGVSVTDYTFEDCQLALAEGQLRLPADTCLLEFARLVRGLGLKPEKLEKDL : .:: . : :.:. :.: :. .:.:: KIAA04 NSTSDQAEKSSESRRRYSFDFCSLDNPEA---IPSDTSTKNRHGHRQKHLIVDNFLAHES 890 900 910 920 930 940 220 230 240 250 260 270 FLJ003 DRYSERARMKGGEKIGIAEFAASLEVPVSDLLEDMFSLFDESGSGEVDLRECVVALSVVC KIAA04 LKKPKHKRKRKSLQNRDDLQFLADLEELITKFQVFRISHRSYTFYHENPYPSIFRINFDH 950 960 970 980 990 1000 399 residues in 1 query sequences 2210595 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:00 2009 done: Fri Feb 27 11:02:00 2009 Total Scan time: 0.510 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]