# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh05203.fasta.huge -Q ../query/FLJ00366.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00366, 282 aa vs ./tmplib.10216 library 2210712 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 6.0725+/-0.00526; mu= 8.7709+/- 0.355 mean_var=158.0597+/-34.293, 0's: 0 Z-trim: 1 B-trim: 11 in 1/39 Lambda= 0.102015 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00289 ( 245 res) sh02613 ( 245) 162 34.5 0.0068 KIAA1683 ( 832 res) fh24307 ( 832) 116 28.4 1.6 KIAA0405 ( 706 res) hg01274 ( 706) 107 27.0 3.6 FLJ00304 ( 381 res) sh05037 ( 381) 97 25.2 6.8 KIAA0290 ( 906 res) ha06644 ( 906) 101 26.3 7.7 KIAA0374 ( 584 res) hh00327 ( 584) 98 25.6 7.9 FLJ00240 ( 383 res) sj07454 ( 383) 94 24.8 9.2 KIAA0808 ( 530 res) hk04477s1 ( 530) 95 25.1 10 KIAA0343 ( 1187 res) hg01457 (1187) 99 26.1 11 FLJ00235 ( 141 res) sj07209 ( 141) 86 23.1 11 KIAA0595 ( 1666 res) hj02929s1 (1666) 99 26.3 14 KIAA0505 ( 200 res) hh00043 ( 200) 86 23.2 14 KIAA0437 ( 1605 res) hj00203s1 (1605) 98 26.2 15 KIAA1535 ( 711 res) fk12792 ( 711) 93 25.0 15 KIAA1205 ( 1217 res) fg03511a (1217) 96 25.7 15 KIAA0666 ( 1085 res) hk02075 (1085) 95 25.5 16 KIAA0298 ( 901 res) hf00341(revised) ( 901) 93 25.1 17 KIAA0672 ( 824 res) hk02382 ( 824) 92 24.9 18 KIAA0149 ( 830 res) ha01221 ( 830) 92 24.9 18 KIAA0865 ( 1900 res) hk06640y1 (1900) 97 26.1 18 KIAA0347 ( 1281 res) hg01528(revised) (1281) 94 25.4 19 FLJ00237 ( 351 res) sj07406 ( 351) 86 23.6 20 FLJ00093 ( 977 res) as00093 ( 977) 92 25.0 20 KIAA0947 ( 2330 res) ef03552 (2330) 97 26.2 21 KIAA0048 ( 627 res) ha01311 ( 627) 89 24.3 21 FLJ00020 ( 1142 res) as00020 (1142) 92 25.1 22 FLJ00048 ( 146 res) as00048 ( 146) 79 22.0 23 KIAA1064 ( 1315 res) hj05008s1 (1315) 92 25.2 24 KIAA1526 ( 963 res) fj04743(revised) ( 963) 90 24.7 25 FLJ00287 ( 186 res) sh02562 ( 186) 80 22.3 25 KIAA1477 ( 870 res) fj04927 ( 870) 89 24.5 25 KIAA0280 ( 291 res) ha06179 ( 291) 82 22.9 26 KIAA1486 ( 677 res) fj07162 ( 677) 87 24.1 27 KIAA1810 ( 579 res) fk03376 ( 579) 85 23.7 30 KIAA2037 ( 494 res) pj01545 ( 494) 84 23.4 30 KIAA0546 ( 1919 res) ef04555 (1919) 92 25.4 30 KIAA0616 ( 634 res) hg03623 ( 634) 85 23.7 31 KIAA0775 ( 639 res) hk05255 ( 639) 85 23.7 31 KIAA0304 ( 2415 res) af07172 (2415) 93 25.6 32 FLJ00049 ( 133 res) as00049 ( 133) 75 21.4 33 KIAA1196 ( 851 res) fg01776 ( 851) 86 24.0 34 KIAA0901 ( 1233 res) hk09716 (1233) 88 24.5 35 KIAA1190 ( 174 res) hg03443a ( 174) 76 21.7 35 KIAA0992 ( 772 res) hk07554 ( 772) 85 23.8 35 KIAA0199 ( 1283 res) ha03150s1 (1283) 88 24.6 36 FLJ00349 ( 146 res) sg00018 ( 146) 74 21.3 39 KIAA0208 ( 748 res) ha02713 ( 748) 83 23.5 42 KIAA1869 ( 935 res) hh01800 ( 935) 84 23.8 44 KIAA1282 ( 1117 res) hh04440b(revised) (1117) 85 24.0 44 KIAA1715 ( 429 res) hh02382 ( 429) 79 22.6 45 >>FLJ00289 ( 245 res) sh02613 (245 aa) initn: 102 init1: 77 opt: 162 Z-score: 145.3 bits: 34.5 E(): 0.0068 Smith-Waterman score: 166; 31.492% identity (53.039% similar) in 181 aa overlap (47-208:29-196) 20 30 40 50 60 70 FLJ003 VLSSASPGWSLLPTAMSGECLHSTCPAPRLFLPPPLAVPLS-RWPPCSCLIPPPC-SPGR .::: .: . ::. : :: ::.: FLJ002 VMVMPLHCSLGDRTRPYLKKKKPWSALCYLPPTCGVSHGVTVYPCT-QQPGPCPSPSR 10 20 30 40 50 80 90 100 110 120 FLJ003 HF--------VVLGEYDR---SSNAEPLQV--LSVSRAITHPSWNSTTMNNDVTLLKLAS :::: .: : .:: . : :.. :: .: : .: :..::.:: FLJ002 AAATELNSWSVVLGSLQREGLSPGAEEVGVAALQLPRAYNHYSQGS-----DLALLQLAH 60 70 80 90 100 110 130 140 150 160 170 FLJ003 PAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPA-HL-QQVALPLVTVN-- :. .: :.:: . . . : .: .::: . .. :. : .: . . :: :::. FLJ002 PTTHT----PLCLPQPAHRFPFGASCWATGWDQDTSDGKCWPRLKLGEALCLPSVTVSAP 120 130 140 150 160 180 190 200 210 220 230 FLJ003 QCRQYWGSSITDSMICAGGAGASSCQVSPSTRSSALSCGIPPQPPLLNSPSLFPLRVTPE .: . . . :. : : : . .:.: FLJ002 NCPGFQSPLLPRSQTLAP---APSLSPAPGTLRNLRLRLISRPTCNCIYNQLHQRHLSNP 170 180 190 200 210 220 240 250 260 270 280 FLJ003 ALLSARRETHGCLLVLSPGAPKTAMCAHLLCILELASSAPGSTRS FLJ002 ARPGMLCGGPQPGVQGPCQV 230 240 >>KIAA1683 ( 832 res) fh24307 (832 aa) initn: 168 init1: 52 opt: 116 Z-score: 102.8 bits: 28.4 E(): 1.6 Smith-Waterman score: 122; 27.530% identity (48.583% similar) in 247 aa overlap (1-229:544-764) 10 20 FLJ003 PLSPDHRTAAASTS-AVVLSSASPGWSLLP :: : :. : ..: ... : . : : KIAA16 CMVSPSQVHRSMPSEVSPSLAQLSQATTAVPLRPAHQPMACGVSPSLAQPSQATGMSSRL 520 530 540 550 560 570 30 40 50 60 70 80 FLJ003 TAMSGECLHSTCPA-PR--LFLPPPLAVPLSRWPPCSCLIPPPCSPGRHFVVLGEYDRSS . . :. : :: : . . : :: : . : . : : : .:. : :: KIAA16 AHQPMTCVVSLSPAQPSQAIGVSPSLAHPSG---PHG-LSPSLAHP---YVASGA--GSS 580 590 600 610 620 90 100 110 120 130 140 FLJ003 NAEPLQVLSVSRAITHPSWNST---TMNNDVTLLKLASPAQYTTRISPVCLASSNEALTE : : :. .:: ..:: :. :... . .:: :: . . : .. .:::. KIAA16 LAYPSQTTAVSPRQAQPSVASSPGKTYSSCTLASSLAEPAIAPSLFPPS--VAHTEALSL 630 640 650 660 670 680 150 160 170 180 190 FLJ003 GLTCVTTGWGRLSGVGNVTPAHLQQVALPLVTVNQCRQY----WGSSITDSMICAGGAGA . . : ::. :.. : : :. . :. ::: . ... :. .. KIAA16 AQSPPDT---RLA------PSRSQ----PSVVSGTCHGLNEPCWGSRLDSNLQCSRVDSV 690 700 710 720 200 210 220 230 240 250 FLJ003 SSCQVSPSTRSSALSCGIPPQPPL-------LNSPSLFPLRVTPEALLSARRETHGCLLV . : ::. : .: : : : . ::.::: KIAA16 APCLCHPSAFVS-VSLG-GPYPSVAGNMDQGLNQPSLGTGVNLCEEPLMVSEMVSSPPDF 730 740 750 760 770 780 260 270 280 FLJ003 LSPGAPKTAMCAHLLCILELASSAPGSTRS KIAA16 KFNDVSLGFHHPPRVGGRHVCPPSVVSVSTPNLSHADEEACCVGQ 790 800 810 820 830 >>KIAA0405 ( 706 res) hg01274 (706 aa) initn: 75 init1: 75 opt: 107 Z-score: 96.4 bits: 27.0 E(): 3.6 Smith-Waterman score: 107; 23.429% identity (50.286% similar) in 175 aa overlap (67-237:291-456) 40 50 60 70 80 90 FLJ003 LHSTCPAPRLFLPPPLAVPLSRWPPCSCLIPPPCSPGRHFVVLGEYDRSSNAEPLQVLSV ::: :: :.. : : . : :: ..: KIAA04 LLTNKGIAEGTFSHLTKLKEFSIVRNSLSHPPPDLPGTHLIRLYLQDNQINHIPLTAFSN 270 280 290 300 310 320 100 110 120 130 140 150 FLJ003 SRAITH--PSWNSTTMNNDVTLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGR : . . : :. : .. .. .:.. : :.: .: : . .:: : . .. . KIAA04 LRKLERLDISNNQLRMLTQGVFDNLSNLKQLTARNNPWFCDCSIKWVTEWLKYIPSSLN- 330 340 350 360 370 160 170 180 190 200 210 FLJ003 LSGVGNVTPAHLQQVALPLVTVN--QCRQYWGSSITDSMICAGGAGASSCQVSPSTRSSA . : : ... .:. ...: .: . : .. : ... ::.:. . KIAA04 VRGFMCQGPEQVRGMAVRELNMNLLSC-----PTTTPGLPLFTPAPSTA---SPTTQPPT 380 390 400 410 420 430 220 230 240 250 260 270 FLJ003 LSCGIPPQPPLLNSPSLFPLRVTPEALLSARRETHGCLLVLSPGAPKTAMCAHLLCILEL :: : . .:. : . :. KIAA04 LSIPNPSRSYTPPTPTTSKLPTIPDWDGRERVTPPISERIQLSIHFVNDTSIQVSWLSLF 440 450 460 470 480 490 >>FLJ00304 ( 381 res) sh05037 (381 aa) initn: 67 init1: 67 opt: 97 Z-score: 91.5 bits: 25.2 E(): 6.8 Smith-Waterman score: 97; 25.166% identity (49.007% similar) in 151 aa overlap (30-177:44-187) 10 20 30 40 50 FLJ003 PLSPDHRTAAASTSAVVLSSASPGWSLLPTAMSGECLHSTCPAPRLFLP-PPLAVPLSR :: :. : : : .: ::: ::. FLJ003 IKALRSGMRAAPDREGWPLFHHYVQHSAKNTASSSCSLVSPAGLSLLAFPLPPLKWPLQC 20 30 40 50 60 70 60 70 80 90 100 110 FLJ003 WPPCSCLIPPPCSPGRHFVVLGEYDRSSNAEPLQVLSVSRAITHPSWNSTTMNNDVTLLK :: : : : .. . . . .::.: . : : . :.. .. .: FLJ003 WP------PAPLHPVPRYDMESTDNGASNSEKNKPLEQSVEDLSKGPPSSVPKSRHLTIK 80 90 100 110 120 120 130 140 150 160 170 FLJ003 LASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVT--PAHLQQVALPLVTV : .::. . ..:... . . :. . . :: . : :: ....:: : . FLJ003 L-TPAHSRKALRNSRIVSQKDDVHVCIMCLRAIMNYQSGFSLVMNHPACVNEIALSLNNK 130 140 150 160 170 180 180 190 200 210 220 230 FLJ003 NQCRQYWGSSITDSMICAGGAGASSCQVSPSTRSSALSCGIPPQPPLLNSPSLFPLRVTP : FLJ003 NPRTKALVLELLAAVCLVRGGHDIILAAFDNFKEVCGEQHRFEKLMEYFRNEDSNIDFMV 190 200 210 220 230 240 >>KIAA0290 ( 906 res) ha06644 (906 aa) initn: 110 init1: 53 opt: 101 Z-score: 90.5 bits: 26.3 E(): 7.7 Smith-Waterman score: 103; 25.506% identity (48.988% similar) in 247 aa overlap (5-225:462-694) 10 20 30 FLJ003 PLSPDHRTAAASTSAVVLSSASPGWSLLPTAMSG ::. ..:.: :: :: : : . KIAA02 APRTSSCAERLQSEEQVSKNLFGPPLESAFDHEDFTGSSSLGFTSSPSPFSSSSPENVED 440 450 460 470 480 490 40 50 60 70 80 FLJ003 ECLHSTC-----PAPRLFLPPPLAVPLSRWPPCSCLIPPPCSPGRHFVVLGEYDR--SSN : : :.: ..: : ..: : :: :: ::: . : . : . . .:. KIAA02 SGLDSPSHAAPGPSPDSWVPRP-GTPQS--PP-SCRAPPPEARGIRAPPLPDSPQPLASS 500 510 520 530 540 90 100 110 120 130 140 FLJ003 AEPLQVLSVSRAITHPSWNSTTMNNDVTLLKLASPAQYTTRISPVCLASSNEALTEGLT- : . ... . :. . : . .. : : . .: :. :: :...:. KIAA02 PGPWGLEALAGGDLMPAPADPTAREGLA----APPRRLRSRKVSCPLTRSNGDLSRSLSP 550 560 570 580 590 600 150 160 170 180 FLJ003 ------CVTTGWGR---LSGVGN-----VTPAHL-QQVALPLVTV--NQCRQYW-GSSIT ..:. : :: .:. .:. : .: :::..:. . . :. : : . KIAA02 SPLGSSAASTALERPSFLSQTGHGVSRGPSPVVLGSQDALPIATAFTEYVHAYFRGHSPS 610 620 630 640 650 660 190 200 210 220 230 240 FLJ003 DSMICAGGAGASSCQVSPSTRSSALSCGIPPQPPLLNSPSLFPLRVTPEALLSARRETHG : . . . .. :. ..: : :: ::.:. KIAA02 ----CLARVTGELTMTFPAGIVRVFS-GTPP-PPVLSFRLVHTTAIEHFQPNADLLFSDP 670 680 690 700 710 250 260 270 280 FLJ003 CLLVLSPGAPKTAMCAHLLCILELASSAPGSTRS KIAA02 SQSDPETKDFWLNMAALTEALQRQAEQNPTASYYNVVLLRYQFSRPGPQSVPLQLSAHWQ 720 730 740 750 760 770 >>KIAA0374 ( 584 res) hh00327 (584 aa) initn: 77 init1: 77 opt: 98 Z-score: 90.2 bits: 25.6 E(): 7.9 Smith-Waterman score: 98; 28.378% identity (49.324% similar) in 148 aa overlap (145-281:3-134) 120 130 140 150 160 FLJ003 TLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQ------- :: :. .: ::. .:: .. KIAA03 PLLTVVVLSW----VVGTCAPALFNSLVEAAV 10 20 170 180 190 200 210 220 FLJ003 --QVALPLVTVNQCRQ--YWGSSITDSMICAGGAGASSCQVSPSTRSSALSCGIPPQPPL :. : :. . :. . ::. .. : : : ...: :: . . :::: ::: KIAA03 VCQALAPGVSCRRVRREAMPGSGPSERMTWPGPA----LSAGPPTRPLSSAPGIPPIPPL 30 40 50 60 70 80 230 240 250 260 270 280 FLJ003 LNSPSLFPLRVTPEALLSARRETHGCLLVLSPGAPKTAMCAHLLCILELASSAPGSTRS . ::. . .: ..:: . : :: : .. :. : .:: :: . KIAA03 TRTHSLMAM-----SLPGSRRTSAGSRRRTSP--PVSVRDAYGTSSLS-SSSNSGSYKGS 90 100 110 120 130 KIAA03 DSSPTPRRSMKYTLCSDNHGIKPPTPEQYLTPLQQKEVCIRHLKARLKDTQDRLQDRDTE 140 150 160 170 180 190 >>FLJ00240 ( 383 res) sj07454 (383 aa) initn: 87 init1: 87 opt: 94 Z-score: 89.1 bits: 24.8 E(): 9.2 Smith-Waterman score: 96; 26.357% identity (48.837% similar) in 129 aa overlap (37-161:5-116) 10 20 30 40 50 60 FLJ003 RTAAASTSAVVLSSASPGWSLLPTAMSGECLHSTCPAPRLFLPPPLAVPLSRWPPCSCLI : : ::::::.::: : : :. :. FLJ002 LRHRLASRCPAPRLLLPPHLPQPGSQQ-----LL 10 20 70 80 90 100 110 120 FLJ003 PPPCSPGRHFVVLGEYDRSSNAEP---LQVLSVSRAITHPSWNSTTMNNDVTLLKLASPA : : :.. : : .: . ...: . ..: . .. : : . FLJ002 PQ-----------GSLHRKGREAPPAFKQFFSSAYTLSHVNLSATKLPLEA-LRALLQGL 30 40 50 60 70 130 140 150 160 170 180 FLJ003 QYTTRISPVCLA-SSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQQVALPLVTVNQCRQY . ....: . : :: : . : . : .. ::.. FLJ002 SLNSHLSDLHLDLSSCELRSAGAQALQEQLGAVTCVGSLDLSDNGFDSDLLTLVPALGKN 80 90 100 110 120 130 190 200 210 220 230 240 FLJ003 WGSSITDSMICAGGAGASSCQVSPSTRSSALSCGIPPQPPLLNSPSLFPLRVTPEALLSA FLJ002 KSLKHLFLGKNFNVKAKTLEEILHKLVQLIQEEDCSLQSLSVADSRLKLRTSILINALGS 140 150 160 170 180 190 >>KIAA0808 ( 530 res) hk04477s1 (530 aa) initn: 78 init1: 53 opt: 95 Z-score: 88.3 bits: 25.1 E(): 10 Smith-Waterman score: 111; 25.962% identity (47.596% similar) in 208 aa overlap (47-243:9-194) 20 30 40 50 60 70 FLJ003 VLSSASPGWSLLPTAMSGECLHSTCPAPRLFLPPPLAVPLSRWPPCSCLIPPPC-SPGRH : ::: : : . : :: : :: .: KIAA08 CESEMDVRFYPPP-AQPAAA-PDAPCLGPSPCLDPYYC 10 20 30 80 90 100 110 120 130 FLJ003 FVVLGEYDRSSNAEPLQ-VLSVSRAITHPSWNSTTMNNDVTLLKLASPAQYTTRISPVCL :: : .:: : . .:.. :: .: .: : :.: : KIAA08 NKFDGENMYMSMTEPSQDYVPASQSYPGPSLESEDFN--------IPP------ITPPSL 40 50 60 70 80 140 150 160 170 180 190 FLJ003 ASSNEALTEGLTCVTTGWGRLSGVGN---VTPAHLQQVALPLVTVNQCRQYWGSSITDSM ...:.. :. : .:. : : . : : :.. :: .::.. :. ...:. KIAA08 P--DHSLVH-LNEVESGYHSLCHPMNHNGLLPFHPQNMDLPEITVSNMLGQDGTLLSNSI 90 100 110 120 130 200 210 220 230 240 FLJ003 -ICAGGAGASSCQVSPSTRSSALSCGIPPQPP--LLNSPSLFP---LRVTPEALLSARRE . . . : : . .:. : : . ..:...: : . .. :::. KIAA08 SVMPDIRNPEGTQYSSHPQMAAMR---PRGQPADIRQQPGMMPHGQLTTINQSQLSAQLG 140 150 160 170 180 190 250 260 270 280 FLJ003 THGCLLVLSPGAPKTAMCAHLLCILELASSAPGSTRS KIAA08 LNMGGSNVPHNSPSPPGSKSATPSPSSSVHEDEGDDTSKINGGEKRPASDMGKKPKTPKK 200 210 220 230 240 250 >>KIAA0343 ( 1187 res) hg01457 (1187 aa) initn: 113 init1: 52 opt: 99 Z-score: 87.6 bits: 26.1 E(): 11 Smith-Waterman score: 99; 42.308% identity (61.538% similar) in 52 aa overlap (5-52:134-184) 10 20 30 FLJ003 PLSPDHRTAAASTSAVVLSSASPGWS---LLP-T ..: ::.:.. :: : :: :. : : : KIAA03 MKPGTGTLIINIMSEGKAETYEGVYQCTARNERGAAVSNNIVVRPSRSPLWTKEKLEPIT 110 120 130 140 150 160 40 50 60 70 80 90 FLJ003 AMSGECLHSTCPAPRLFLPPPLAVPLSRWPPCSCLIPPPCSPGRHFVVLGEYDRSSNAEP .::. : : : . ::::. KIAA03 LQSGQSLVLPCRPP-IGLPPPIIFWMDNSFQRLPQSERVSQGLNGDLYFSNVLPEDTRED 170 180 190 200 210 220 >>FLJ00235 ( 141 res) sj07209 (141 aa) initn: 69 init1: 56 opt: 86 Z-score: 87.5 bits: 23.1 E(): 11 Smith-Waterman score: 86; 29.762% identity (51.190% similar) in 84 aa overlap (28-103:50-124) 10 20 30 40 FLJ003 PLSPDHRTAAASTSAVVLSSASPGWSLLPTAMSGE--------CLHSTCPAPRLFLP ::::..: : :: : :. . FLJ002 PMPPPQAPAAGVICQAGEKCPASVKCVRDPLPTALGGAGVSLQSQPCGPSTAPRPKA-IR 20 30 40 50 60 70 50 60 70 80 90 100 FLJ003 PPLAVPLSRWPPCSCLIPPPCSPGRHFVVLGEYDRSSNAEPLQVLSVSRAITHPSWNSTT .::: .. :. ::: . :.. ::.: : . . .:...:: FLJ002 ALMAVPTNHSSHCGPRPPPPTRGSLHLT-------SSGAVSL-LCARARGLAHPLSCSLA 80 90 100 110 120 130 110 120 130 140 150 160 FLJ003 MNNDVTLLKLASPAQYTTRISPVCLASSNEALTEGLTCVTTGWGRLSGVGNVTPAHLQQV FLJ002 HPLLGKTWTCH 140 282 residues in 1 query sequences 2210712 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:01 2009 done: Fri Feb 27 11:02:01 2009 Total Scan time: 0.440 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]