# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh05935.fasta.huge -Q ../query/FLJ00308.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00308, 233 aa vs ./tmplib.10216 library 2210761 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 8.0535+/-0.00668; mu= 1.1889+/- 0.449 mean_var=289.1152+/-64.138, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.075429 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1986 ( 334 res) pg00636 ( 334) 137 26.8 1.7 FLJ00034 ( 1343 res) as00034 (1343) 148 28.8 1.7 KIAA0680 ( 635 res) hk02746 ( 635) 136 27.0 2.7 KIAA1357 ( 836 res) fj01906 ( 836) 135 27.1 3.4 KIAA1343 ( 520 res) fj00420 ( 520) 127 25.9 4.7 FLJ00236 ( 702 res) sj07289 ( 702) 125 25.9 6.5 KIAA1690 ( 482 res) fh27434 ( 482) 120 25.1 7.5 KIAA0936 ( 640 res) hh04647 ( 640) 122 25.5 7.7 KIAA0684 ( 1218 res) hk07567 (1218) 125 26.2 9.1 KIAA0765 ( 952 res) hk04803s1 ( 952) 123 25.8 9.1 KIAA0660 ( 490 res) hk01902 ( 490) 116 24.7 10 KIAA0900 ( 503 res) hk09606s1 ( 503) 116 24.7 10 KIAA0819 ( 989 res) hh01037 ( 989) 118 25.3 14 KIAA0762 ( 724 res) hk04668s1 ( 724) 115 24.8 14 KIAA0268 ( 1193 res) ha07061 (1193) 119 25.5 14 KIAA1617 ( 904 res) fj13890 ( 904) 115 24.9 16 KIAA0910 ( 1315 res) hg02207s1 (1315) 116 25.3 19 KIAA0324 ( 2800 res) ee08846s1 (2800) 122 26.3 19 KIAA0339 ( 1709 res) hg01304(revised) (1709) 117 25.5 20 KIAA1075 ( 1505 res) hj06716s1 (1505) 115 25.2 22 KIAA1481 ( 1380 res) fj05724 (1380) 114 25.1 22 KIAA0666 ( 1085 res) hk02075 (1085) 112 24.7 23 FLJ00227 ( 196 res) sj06355 ( 196) 98 22.2 23 KIAA1818 ( 1157 res) hg00622 (1157) 112 24.7 23 FLJ00353 ( 1766 res) sh01144 (1766) 113 25.1 28 KIAA1681 ( 1236 res) fh23697 (1236) 110 24.6 28 KIAA1518 ( 876 res) sh00483 ( 876) 107 24.0 29 KIAA1535 ( 711 res) fk12792 ( 711) 105 23.7 29 KIAA0495 ( 209 res) hg00106 ( 209) 95 21.9 30 KIAA0904 ( 1535 res) ha00554 (1535) 111 24.8 30 KIAA1931 ( 514 res) fj14393 ( 514) 102 23.2 30 KIAA1306 ( 1154 res) fh05845 (1154) 108 24.3 31 KIAA1963 ( 488 res) ph00179 ( 488) 101 23.1 32 KIAA0236 ( 1696 res) ha04654 (1696) 111 24.9 32 KIAA1695 ( 1199 res) fj11471 (1199) 108 24.3 32 KIAA1902 ( 1112 res) hj04383 (1112) 107 24.2 33 FLJ00419 ( 229 res) sj09483 ( 229) 94 21.9 34 KIAA1295 ( 550 res) fg01760 ( 550) 101 23.1 34 KIAA1853 ( 708 res) hj04155 ( 708) 103 23.5 34 KIAA0867 ( 568 res) hk06783 ( 568) 101 23.2 35 KIAA1299 ( 730 res) fg04370 ( 730) 103 23.5 35 KIAA1908 ( 445 res) ah02604 ( 445) 99 22.8 35 KIAA0136 ( 950 res) ha03621s1 ( 950) 105 23.9 35 KIAA0985 ( 697 res) hj08038 ( 697) 102 23.4 36 KIAA1096 ( 1919 res) pf00402 (1919) 110 24.8 37 KIAA0437 ( 1605 res) hj00203s1 (1605) 108 24.5 38 KIAA0381 ( 1114 res) ah04695 (1114) 103 23.7 45 KIAA0442 ( 1266 res) hh03913 (1266) 104 23.9 45 KIAA0820 ( 892 res) bg00036 ( 892) 101 23.4 46 FLJ00221 ( 298 res) sj06160 ( 298) 92 21.8 46 >>KIAA1986 ( 334 res) pg00636 (334 aa) initn: 133 init1: 76 opt: 137 Z-score: 102.3 bits: 26.8 E(): 1.7 Smith-Waterman score: 140; 27.092% identity (49.402% similar) in 251 aa overlap (7-231:9-232) 10 20 30 40 50 FLJ003 VLPSFPGPPVRPWRDRPQSSIYDPFAGMKTPGQRQLITLQEQVKLGIVNVDEAVLHFK : ..:: : . : ..:.: .: ::: .......:.: KIAA19 TQERGGEQGTVLQPWGGRKAGWWGRP----ESPSQ----ALPPQVK-SFIETQKALL--A 10 20 30 40 60 70 80 90 100 110 FLJ003 EWQLNQKKRSESFRFQQENLKRLRDSITRRQREKQKSGKQTDLEITVPIRHSQHLP-P-- : : : ::. . ..:. :. ... . : . : : : .. .... : : KIAA19 EIQ-NGCKRNLVLAREREE-KEQPPQLSASMPETTATEPQPDDEPAAGVQNGAPSPAPSP 50 60 70 80 90 100 120 130 140 150 160 FLJ003 -------------KVEFGVYESGPRKSVIPPRTELRRGDWKTDSTSSTASSTSNRSSTRS . : : . : ...:: : :: . .. :: :.. KIAA19 DSDSDSDSDGEEEEEEEGERDETPCPALVPPTDSLGPGDRSPPGSPSTP--------TEQ 110 120 130 140 150 170 180 190 200 210 FLJ003 LLSVSSGMEGDNEDNEVPEVTRSRSPGPPQVD--GTPTMSLERPPRVPPRAASQRPP--- .:::: .: ..: ::: .:: : ... ..:: :: :: :. . :: KIAA19 RISVSSPGRG----HKVFVVTRVESP-PERAEPPASPTPPSPPPPPSPP-ASPSLPPAGA 160 170 180 190 200 210 220 230 FLJ003 --TRET--FHP-PPPVPPRGR ::.: .: ::: ::: KIAA19 IDTRDTGSSEPQPPPEPPRSGPPLPNGLKPEFALALPPEPPPGPEVKGGSCGLEHGERGP 220 230 240 250 260 270 >>FLJ00034 ( 1343 res) as00034 (1343 aa) initn: 97 init1: 97 opt: 148 Z-score: 102.2 bits: 28.8 E(): 1.7 Smith-Waterman score: 151; 27.211% identity (51.701% similar) in 147 aa overlap (90-229:145-275) 60 70 80 90 100 110 FLJ003 WQLNQKKRSESFRFQQENLKRLRDSITRRQREKQKSGKQTD-LEITVPIRHSQHLPPKVE : . :.. : ::... .: ... : . FLJ000 DTATVLDMATDSFLAGLVSVLDPPDTWVPSRLDLRPGESEDMLELVAEVRIGDRDPIPL- 120 130 140 150 160 170 120 130 140 150 160 170 FLJ003 FGVYESGPRKSVIPPRTELRRGDWKTDSTSSTASSTSNRSSTRSLLSVSSGMEGDNEDNE : :..: .:: :.: .: : :..: . .: : ....: .: FLJ000 -------PVPSLLP---RLR--AWRTGKTVSPQSNSSRPTCARHL-TLGTG-DGGPAPPP 180 190 200 210 180 190 200 210 220 230 FLJ003 VPEVTRSRSPGPPQVDGTPTMSLERPPRVPPRAASQRPPTRETFHP------PPPVPPRG .: . : ::.: ...:. :: .:: . : . ::: :::.: FLJ000 APS-SASSSPSPSPSSSSPSPPPPPPPPAPPAPPAPRFDIYDPFHPTDEAYSPPPAPEQK 220 230 240 250 260 270 FLJ003 R FLJ000 YDPFEPTGSNPSSSAGTPSPEEEEEEEEEEEEEEEDEEEEEGLSQSISRISETLAGIYDD 280 290 300 310 320 330 >>KIAA0680 ( 635 res) hk02746 (635 aa) initn: 143 init1: 56 opt: 136 Z-score: 98.7 bits: 27.0 E(): 2.7 Smith-Waterman score: 137; 24.201% identity (52.055% similar) in 219 aa overlap (24-233:20-215) 10 20 30 40 50 60 FLJ003 VLPSFPGPPVRPWRDRPQSSIYDPFAGMKTPGQRQLITLQEQVKLGIVNVDEAVLHFKEW : :: .:: .... ::. .. :: : KIAA06 DMDNAVDGLDKASIANSDGPTAGSQTP------PFKRKGKLSTIGK-----IFKPW 10 20 30 40 70 80 90 100 110 FLJ003 QLNQKKRSESFRFQQENLKRLRDSITRRQREKQ------KSGKQTDLEITVPIRHSQ-HL . .:: :..:: . :.: . : ::..::. : . : ..:: ...:. :. KIAA06 KWRKKKTSDKFRETSAVLER-KIS-TRQSREELIRRGVLKELPDQDGDVTVNFENSNGHM 50 60 70 80 90 100 120 130 140 150 160 170 FLJ003 PPKVEFGVYESGPRKSVIPPRTELRRGDW--KTDSTSSTASSTSNRSSTRSLLSVSSGME : : :: ...:. ..: :. :: : . .. . ..: .. .. KIAA06 IPIGE----ESTREENVV--KSEEGNGSVSEKTPPLEEQAEDKKENTENHSETPAAPALP 110 120 130 140 150 180 190 200 210 220 230 FLJ003 GDNEDNEVPEVTRSRSPGPPQVDGTPTMSLERPPRVPPRAASQRPPTRETFHPPPPVPPR . . . ..:: ::. :. . . .. .::: . . : ... : :: : KIAA06 PSAPPKPRSKPKPKKSPVPPK--GATAGASHKGDEVPPIKKNTKAPGKQA--PVPPPKPA 160 170 180 190 200 210 FLJ003 GR .: KIAA06 SRNTTREAAGSSHSKKTTGSKASASPSTSSTSSRPKASKETVSSKAGTVGTTKGKRKTDK 220 230 240 250 260 270 >>KIAA1357 ( 836 res) fj01906 (836 aa) initn: 116 init1: 72 opt: 135 Z-score: 96.8 bits: 27.1 E(): 3.4 Smith-Waterman score: 135; 34.259% identity (50.000% similar) in 108 aa overlap (128-227:100-206) 100 110 120 130 140 150 FLJ003 QTDLEITVPIRHSQHLPPKVEFGVYESGPRKSVIPPRTELRRGDWKTDSTSSTASSTSNR ::: : . . . :: ::.: KIAA13 EKSHRVISPSSGYSSQSNTPTALTPVPVFLKSVSPANGKGKPKPKVPERKSSLISSVSIS 70 80 90 100 110 120 160 170 180 190 200 210 FLJ003 SSTRSLLSVSSGMEGDNEDNEV-PEVTRSRSPGPPQVDGTP-TMSLERPPRVPP----RA ::. :: : :.. ::.. ... : : .: :: : . : .: : .:: KIAA13 SSSTSL-SSSTSTEGSGTMKKLDPAVGSPPAPPPPPVPSPPFPCPADRSPFLPPPPPVTD 130 140 150 160 170 180 220 230 FLJ003 ASQ-RP-PTRETFHPPPPVPPRGR :: : : .: :::: KIAA13 CSQGSPLPHSPVFPPPPPEALIPFCSPPDWCLSPPRPALSPILPDSPVSLPLPPPLLPSS 190 200 210 220 230 240 >>KIAA1343 ( 520 res) fj00420 (520 aa) initn: 108 init1: 74 opt: 127 Z-score: 94.4 bits: 25.9 E(): 4.7 Smith-Waterman score: 127; 25.743% identity (59.406% similar) in 101 aa overlap (141-233:368-465) 120 130 140 150 160 FLJ003 QHLPPKVEFGVYESGPRKSVIPPRTELRRGDWKTD--STSSTASSTSNRSSTRSLLSVSS .:... . .:...... :.: .: : KIAA13 ADVIGNKTVGQVKNFFVNYRRRFNLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPS 340 350 360 370 380 390 170 180 190 200 210 220 FLJ003 GMEGDNEDN-EVPEVTRSRSPGPPQVDGTPT-----MSLERPPRVPPRAASQRPPTRETF : :.:.. ..:.. :. .:.:: ..::: .:..:: : : . KIAA13 GKSTDEEEEAQTPQAPRTLGPSPPAPSSTPTPTAPIATLNQPP---PLLRPTLPAAPALH 400 410 420 430 440 450 230 FLJ003 HPPPPVPPRGR . :::. ..: KIAA13 RQPPPLQQQARFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTD 460 470 480 490 500 510 >>FLJ00236 ( 702 res) sj07289 (702 aa) initn: 92 init1: 57 opt: 125 Z-score: 91.8 bits: 25.9 E(): 6.5 Smith-Waterman score: 125; 30.894% identity (52.033% similar) in 123 aa overlap (108-225:384-499) 80 90 100 110 120 130 FLJ003 LKRLRDSITRRQREKQKSGKQTDLEITVPIRHSQHLPPKVEFGVYESGPRKSVIPPRTEL : :: : :.:. . ... : . FLJ002 TLKRPEVIATCGVALWLLLLGTAVCIHRRRRARVHLGP----GLYRYTSEDAILKHRMDH 360 370 380 390 400 140 150 160 170 180 190 FLJ003 RRGDWKTDSTSSTASSTSNRSSTRSLLSVSSGMEGDNEDNEVPEVT-RSRSPGPPQVDGT ..: .:. :: :.. . ::. :: : .. : : . .. ::::: : . : FLJ002 SDSQWLADTWRST-SGSRDLSSSSSLSSRLGADARDPLDCRRSLLSWDSRSPGVPLLPDT 410 420 430 440 450 460 200 210 220 230 FLJ003 PTM--SL--ERPPRVPPRAASQRPPTRETFHPPPPVPPRGR :. :: : : .: : . : : .:. :: FLJ002 STFYGSLIAELPSSTPARPSPQVPAVRRL--PPQLAQLSSPCSSSDSLCSRRGLSSPRLS 470 480 490 500 510 520 FLJ002 LAPAEAWKAKKKQELQHANSSPLLRDSHSLELRACELGNRGSKNLSQSPGAVPQALVAWR 530 540 550 560 570 580 >>KIAA1690 ( 482 res) fh27434 (482 aa) initn: 123 init1: 93 opt: 120 Z-score: 90.6 bits: 25.1 E(): 7.5 Smith-Waterman score: 129; 25.166% identity (48.344% similar) in 151 aa overlap (95-229:37-181) 70 80 90 100 110 120 FLJ003 KKRSESFRFQQENLKRLRDSITRRQREKQKSGKQTDLEITVPIRHSQHLPPKVEFGVYES :: .:.: ..: . .. KIAA16 LSFLLILALTEALAFAIQEPSPRESLQVLPSGTPPGTMVTAPHSSTRHTSVVMLTPNPDG 10 20 30 40 50 60 130 140 150 160 170 FLJ003 GPRKSVIP-----PRTELRRGDWKTDSTSSTASSTSNRSSTRSL---------LSVSSGM : ... : ::.: : : . :. :.... : :: ..:: KIAA16 PPSQAAAPMATLTPRAE---GHPPTHTISTIAATVTAPHSESSLSTGPAPAAMATTSSKP 70 80 90 100 110 120 180 190 200 210 220 FLJ003 EGDNEDNEVPEVTRSRSPGPPQVDGT--PTMSLERPPRVPPRAASQRPPTRETFHPPPPV :: . . .: . .. :: . : : . .:::: :: .:.: . .. .: ::. KIAA16 EGRPRGQAAPTILLTKPPGATSRPTTAPPRTTTRRPPR-PP--GSSRKGAGNSSRPVPPA 130 140 150 160 170 180 230 FLJ003 PPRGR : KIAA16 PGGHSRSKEGQRGRNPSSTPLGQKRPLGKIFQIYKGNFTGSVEPEPSTLTPRTPLWGYSS 190 200 210 220 230 240 >>KIAA0936 ( 640 res) hh04647 (640 aa) initn: 57 init1: 57 opt: 122 Z-score: 90.4 bits: 25.5 E(): 7.7 Smith-Waterman score: 124; 27.326% identity (47.674% similar) in 172 aa overlap (75-233:478-629) 50 60 70 80 90 100 FLJ003 LGIVNVDEAVLHFKEWQLNQKKRSESFRFQQENLKRLRDSITRRQREKQKSGKQTDLEIT : . .: ::. : :. ::. KIAA09 RQSDDTLCRFESVLDLKPSEPVGTGNSAPTQTSYQR-RDTPTLRSAAKQHY--------- 450 460 470 480 490 110 120 130 140 150 160 FLJ003 VPIRHSQHLPP-KVEFGVYESGPRKSVIPPRTELRRGDWKTDSTSSTASSTSNRSSTRSL ..::..:: ... :. :.: : ::: : . ..:.: : :. .:. : KIAA09 --LKHSRYLPGISIRNGIL-SNPGKEFIPPNPWSSSG--LSGKSSGTMSVISKVNSVGSS 500 510 520 530 540 550 170 180 190 200 210 FLJ003 LSVSSGMEGDNEDNEVPEVTRSR----------SPGPPQVDGTPTMSLERPPRVPPRAAS . :::. : : :: ... .: : : ... :: : . KIAA09 STSSSGLTG----NYVPSFLKKEIGSAMQRVHLAPIPDPSPGYSSLKAMRPHPGRPFFHT 560 570 580 590 600 220 230 FLJ003 QRPPTRETFHPPPPV--PPRGR : : . . : ::. : .:: KIAA09 Q-PRSTPGLIPRPPAAQPVHGRTDWASKYASRR 610 620 630 640 >>KIAA0684 ( 1218 res) hk07567 (1218 aa) initn: 57 init1: 57 opt: 125 Z-score: 89.2 bits: 26.2 E(): 9.1 Smith-Waterman score: 125; 23.077% identity (54.438% similar) in 169 aa overlap (60-218:27-193) 30 40 50 60 70 80 FLJ003 TPGQRQLITLQEQVKLGIVNVDEAVLHFKEWQLNQKKRSES-FRFQQENLKRLRDSITRR :. .:: : . : .... ...: . :: KIAA06 LCNSETSPIRGTRQPDRHLPLSFLPPWSREQKDLSLTPFTIKRKAMEELSADEIRR 10 20 30 40 50 90 100 110 120 130 140 FLJ003 QREKQKSGKQTDLEITVPIRHSQHL-PPKVEFGVYESGPRKSV-------IPPRTELRRG .: . .: ::. . :.:. :. :: ... :: .:. : . . . KIAA06 RRLARLAGGQTS-QPTTPLTSPQRENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGAS 60 70 80 90 100 110 150 160 170 180 190 FLJ003 DWKTDSTSSTASSTSNRSSTRSLLSVSSGMEGDNEDNEVPEVTRSRSPGPPQVD-GTPTM : :: . :. . : . :: . :... . ... .. :. .: . .:: : .: KIAA06 GVAHRSQSSEGVSSLSSSPSNSLETQSQSL-SRSQSMDIDGVSCEKSMSQVDVDSGIENM 120 130 140 150 160 170 200 210 220 230 FLJ003 SLERPPRVPPRAASQRPPTRETFHPPPPVPPRGR ... : :. :.. :. KIAA06 EVDENDRREKRSLSDKEPSSGPEVSEEQALQLVCKIFRVSWKDRDRDVIFLSSLSAQFKQ 180 190 200 210 220 230 >>KIAA0765 ( 952 res) hk04803s1 (952 aa) initn: 133 init1: 92 opt: 123 Z-score: 89.2 bits: 25.8 E(): 9.1 Smith-Waterman score: 123; 28.829% identity (52.252% similar) in 111 aa overlap (124-230:147-245) 100 110 120 130 140 150 FLJ003 KSGKQTDLEITVPIRHSQHLPPKVEFGVYESGPRKSVIPPRTELRRGDW--KTDSTSSTA ..: ::. : ..... .: ::.:.. KIAA07 IPPANASRSGPPPSSGMSSRVNLPTTVSNFNNPSPSVVTATTSVHESNKNIQTFSTASVG 120 130 140 150 160 170 160 170 180 190 200 FLJ003 SSTSNRSSTRSLLSVSSGMEGDNED-NEVPEVTRSRSPGPPQVDGTPTM-SLERPPRVPP .. : ... . . :: . . : :: :: . :.: :: : .:: KIAA07 TAPPNMGASFGSPTFSSTVPSTASPMNTVP---------PPPIPPIPAMPSLPPMPSIPP 180 190 200 210 220 210 220 230 FLJ003 RAASQRPPTRETFHPPPPVPPRGR . :: :. : ::::: KIAA07 IPV---PPPVPTLPPVPPVPPIPPVPSVPPMTPLPPMSGMPPLNPPPVAPLPAGMNGSGA 230 240 250 260 270 280 233 residues in 1 query sequences 2210761 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:25 2009 done: Fri Feb 27 10:51:26 2009 Total Scan time: 0.390 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]