# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh06450.fasta.huge -Q ../query/FLJ00311.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00311, 249 aa vs ./tmplib.10216 library 2210745 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.6141+/-0.00509; mu= 18.9114+/- 0.344 mean_var=148.1943+/-32.932, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40 Lambda= 0.105356 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0058 ( 181 res) ha01532 ( 181) 122 28.3 0.33 KIAA1100 ( 444 res) hk07907 ( 444) 119 28.5 0.7 KIAA0505 ( 200 res) hh00043 ( 200) 114 27.2 0.81 KIAA1688 ( 1094 res) fh26207 (1094) 119 29.2 1.1 KIAA0269 ( 567 res) ha06751 ( 567) 105 26.6 3.5 KIAA1056 ( 870 res) hh11792 ( 870) 106 27.0 3.8 FLJ00042 ( 452 res) as00042 ( 452) 101 25.8 4.7 KIAA1971 ( 830 res) fk08985 ( 830) 103 26.6 5.1 KIAA1357 ( 836 res) fj01906 ( 836) 102 26.4 5.7 FLJ00320 ( 267 res) sh07586 ( 267) 96 24.7 6.2 KIAA0476 ( 1626 res) ah04654 (1626) 103 27.1 7.1 FLJ00070 ( 1382 res) as00070 (1382) 102 26.8 7.3 FLJ00193 ( 491 res) sj02629 ( 491) 97 25.3 7.5 FLJ00362 ( 638 res) sh04538 ( 638) 98 25.6 7.7 FLJ00315 ( 925 res) sh06842 ( 925) 99 26.0 8.3 KIAA2032 ( 952 res) eh00720 ( 952) 97 25.7 10 KIAA1779 ( 1233 res) hg04229 (1233) 98 26.1 11 KIAA1930 ( 664 res) fj11193 ( 664) 95 25.2 11 KIAA0929 ( 1663 res) hh03374 (1663) 99 26.5 11 KIAA0890 ( 1210 res) hk08057 (1210) 97 25.9 12 KIAA1814 ( 1285 res) ph00952 (1285) 97 26.0 12 FLJ00160 ( 1696 res) sh06621 (1696) 98 26.3 12 KIAA0542 ( 1212 res) hg04325s1 (1212) 96 25.8 13 KIAA0910 ( 1315 res) hg02207s1 (1315) 96 25.8 13 KIAA1343 ( 520 res) fj00420 ( 520) 91 24.4 15 FLJ00287 ( 186 res) sh02562 ( 186) 86 22.9 15 KIAA1535 ( 711 res) fk12792 ( 711) 92 24.8 15 KIAA0450 ( 1182 res) hj05822 (1182) 94 25.5 16 KIAA0847 ( 645 res) hk05395 ( 645) 91 24.5 16 KIAA1935 ( 441 res) fk03135(revised) ( 441) 89 24.0 17 KIAA0907 ( 569 res) hk10396 ( 569) 89 24.1 19 KIAA1802 ( 821 res) fj21631 ( 821) 90 24.6 20 KIAA0572 ( 1872 res) hh02391 (1872) 93 25.6 22 KIAA0600 ( 1080 res) fh08981 (1080) 90 24.8 23 KIAA1224 ( 997 res) fh02652 ( 997) 89 24.6 24 KIAA1065 ( 665 res) hj05094 ( 665) 87 24.0 25 KIAA2020 ( 572 res) ph01249 ( 572) 86 23.7 26 KIAA0344 ( 2066 res) hg01568 (2066) 91 25.4 28 KIAA0497 ( 239 res) hg00150 ( 239) 81 22.3 28 KIAA1883 ( 1480 res) fh02249 (1480) 89 24.9 30 KIAA1681 ( 1236 res) fh23697 (1236) 88 24.6 30 KIAA2035 ( 1135 res) ff09201 (1135) 87 24.4 32 KIAA1760 ( 2219 res) af00030 (2219) 90 25.3 32 KIAA1546 ( 684 res) fh12289 ( 684) 84 23.5 34 KIAA0790 ( 1319 res) hk05609 (1319) 87 24.5 35 KIAA0595 ( 1666 res) hj02929s1 (1666) 88 24.8 35 FLJ00189 ( 491 res) sj02334 ( 491) 82 23.0 36 KIAA0615 ( 943 res) hg01354a ( 943) 85 23.9 36 KIAA0755 ( 1093 res) hk04532 (1093) 85 24.0 39 KIAA1745 ( 893 res) pj01678 ( 893) 84 23.7 39 >>KIAA0058 ( 181 res) ha01532 (181 aa) initn: 85 init1: 63 opt: 122 Z-score: 115.0 bits: 28.3 E(): 0.33 Smith-Waterman score: 122; 30.526% identity (51.579% similar) in 95 aa overlap (68-153:22-108) 40 50 60 70 80 90 FLJ003 LKRGGLGRALRHPCLALNRLLGVRALRVGHSAPIYPIYCASHPVQSWRPALPSLPSLPLA . : ::. ..:: ::. : : . KIAA00 PSATPRQTGPATTMNSKGQYPTQPTYPVQPPGNPVYPQTLHLPQAP--PYT 10 20 30 40 100 110 120 130 140 FLJ003 RALAEQLPPNMSERFRETFL-------PSGRPPLPGSLLHRPDLAEVLDV--LGTSGPAA : :: .:: .: .:. :. .::. :. : .:. . : ::.. : : KIAA00 DA-----PPAYSELYRPSFVHPGAATVPTMSAAFPGASLYLP-MAQSVAVGPLGSTIPMA 50 60 70 80 90 100 150 160 170 180 190 200 FLJ003 FYAGGNLTLEMVAEAQHAGGVITEEDFSNYSALVEKPVCGVYRGDLSPGSQGPPSGEASQ .: : KIAA00 YYPVGPIYPPGSTVLVEGGYDAGARFGAGATAGNIPPPPPGCPPNAAQLAVMQGANVLVT 110 120 130 140 150 160 >>KIAA1100 ( 444 res) hk07907 (444 aa) initn: 125 init1: 53 opt: 119 Z-score: 109.1 bits: 28.5 E(): 0.7 Smith-Waterman score: 137; 29.193% identity (50.311% similar) in 161 aa overlap (12-159:182-339) 10 20 30 FLJ003 WRRVESLRFGAQAREALSSS--LLLRPPPHLIPPSPGGGLK :: : :: .:.::: ::.: KIAA11 VMFSGQHYPLCCLPPPLIQACTMQQLPVPYQAYPHLISSDHYILHPPPPAPPPQPTHMAP 160 170 180 190 200 210 40 50 60 70 80 90 FLJ003 RGGL-GRALRHPCLALNRLLGVRALRVGHSAPIYPIYCASHPVQSWRPALP--SLPSLPL : . . .:: . :.:: . :: . . : .: : . :..: :: :: KIAA11 LGQFVSLQTQHPRMPLQRLDNDVDLRGDQPSLGSFTYSTSAPGPALSPSVPLHYLPHDPL 220 230 240 250 260 270 100 110 120 130 140 FLJ003 ARALA------EQLPPNMS-ERFR-ETFLPSGRPPLPGSLLHRPDLAEVLDVLGTSGPAA . :. ...: .: .:.: . :: :: : . : :..: : :.: KIAA11 HQELSFGVPYSHMMPRRLSTQRYRLQQPLPPPPPPPPPPPYYPSFLPYFLSMLPMS-PTA 280 290 300 310 320 330 150 160 170 180 190 200 FLJ003 FYAGGNLTLEMVAEAQHAGGVITEEDFSNYSALVEKPVCGVYRGDLSPGSQGPPSGEASQ . : ...:.. KIAA11 M--GPTISLDLDVDDVEMENYEALLNLAERLGDAKPRGLTKADIEQLPSYRFNPDSHQSE 340 350 360 370 380 >>KIAA0505 ( 200 res) hh00043 (200 aa) initn: 94 init1: 49 opt: 114 Z-score: 108.0 bits: 27.2 E(): 0.81 Smith-Waterman score: 114; 31.765% identity (45.294% similar) in 170 aa overlap (10-157:25-175) 10 20 30 FLJ003 WRRVESLRFGAQAREALSSSLL---LRPP-PHLIP----PSPGGG : ..: : .. .: :: :...: :.:: : KIAA05 RGSWEPDPPPVDAFSSPCQLFREEGEDSRFASDACVLHGWCRPAVPKVMPCPCLPQPGMG 10 20 30 40 50 60 40 50 60 70 80 90 FLJ003 LKRGGLGRALRHPCLALNRLLGVRALRVGHSAPIYPIYCASHPVQS---WRPALPSLP-- . . . :: : . : : .:. : :. : : ::: : KIAA05 SRPCACPASTRHSSPPLPSF----------SLPTFPL--PSSPLLSAPLLFPPLPSAPLS 70 80 90 100 100 110 120 130 140 FLJ003 -----SLPLARALAEQLP----PNMSERFRETFLPSGRPPLPGSLLHRPDLAEVLDVLGT :::: : .:: : : : :::. :::. :: : :. : .: KIAA05 SLPLLSLPLPSPLFPSLPLPSFPFPSPPFPSPPLPSS--PLPSPLLLSPPLT-CLTLL-C 110 120 130 140 150 160 150 160 170 180 190 200 FLJ003 SGPAAFYAGGNLTLEMVAEAQHAGGVITEEDFSNYSALVEKPVCGVYRGDLSPGSQGPPS .::. : ::: KIAA05 QGPGQ---GWPLTLRSKWVWGPGLSGIRAARQGLLQEQA 170 180 190 200 >>KIAA1688 ( 1094 res) fh26207 (1094 aa) initn: 127 init1: 64 opt: 119 Z-score: 105.7 bits: 29.2 E(): 1.1 Smith-Waterman score: 119; 28.758% identity (48.366% similar) in 153 aa overlap (5-144:404-543) 10 20 30 FLJ003 WRRVESLRFGAQAREALSSSLLLRPPPHLIPPSP : .: . ...: :: : : : :.: KIAA16 GPPSPCQQLVLTKQKCPERFLSLEYSPAGKEYVRQLVYVEQAGSSPKLRAGPRHKYAPNP 380 390 400 410 420 430 40 50 60 70 80 FLJ003 GGGLKRGGLGRALR-HPCLALNRLLGVRAL--------RVGHSAPIYPIYCASHPVQSWR ::: . .:. ::: .. :::.. .. :: : :. :.. ..:: KIAA16 GGG------SYSLQPSPCLLRDQRLGVKSGDYSTMEGPELRHSQPPTPLPQAQEDAMSWS 440 450 460 470 480 90 100 110 120 130 140 FLJ003 PALPSLPSLPLARALAEQLPPNMSERFRETFL---PSGRPPL-PGSLLHRPDLAEVLDVL .: : . : . ... :. : :. : ::.:: . ::: KIAA16 SQQDTLSSTGYS-------PGTRKRKSRKPSLCQATSATPTEGPGDLLVEQPLAEEQPPC 490 500 510 520 530 540 150 160 170 180 190 200 FLJ003 GTSGPAAFYAGGNLTLEMVAEAQHAGGVITEEDFSNYSALVEKPVCGVYRGDLSPGSQGP ::: KIAA16 GTSLAPVKRAEGEAEGARGAAEPFLAQARLAWEAQQAHFHMKQRSSWDSQQDGSGYESDG 550 560 570 580 590 600 >>KIAA0269 ( 567 res) ha06751 (567 aa) initn: 111 init1: 70 opt: 105 Z-score: 96.7 bits: 26.6 E(): 3.5 Smith-Waterman score: 109; 27.966% identity (41.525% similar) in 118 aa overlap (11-125:342-441) 10 20 30 40 FLJ003 WRRVESLRFGAQAREALSSSLLLRPPPHLIPPSPGGGLKR : . .: .:. ::: . :: : . KIAA02 IENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPPPVPPPPPPPAT-- 320 330 340 350 360 50 60 70 80 90 FLJ003 GGLGRALRHPCLALNRLLGVRALRVGHSAP---IYPIYCASHPVQSWRPALPSLPSLPLA ::. : . : : : :: :. : :: :. ..: :: KIAA02 -----ALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQPSPPVARAAPVCETVPVHPLP 370 380 390 400 410 420 100 110 120 130 140 150 FLJ003 RALAEQLPPNMSERFRETFLPSGRPPLPGSLLHRPDLAEVLDVLGTSGPAAFYAGGNLTL .. .. ::: : :::: KIAA02 QGEVQGLPP-----------PPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGP 430 440 450 460 470 >>KIAA1056 ( 870 res) hh11792 (870 aa) initn: 85 init1: 50 opt: 106 Z-score: 95.9 bits: 27.0 E(): 3.8 Smith-Waterman score: 112; 29.771% identity (51.145% similar) in 131 aa overlap (94-219:606-721) 70 80 90 100 110 120 FLJ003 RVGHSAPIYPIYCASHPVQSWRPALPSLPSLPLARALAEQLPPNMSERFRETFLPSGRPP : : ..: :::.. . : :: KIAA10 SWQCKVCSYETNISRNLRIHMTSEKHMQNVLMLHQGLPLGLPPGL--------MGPGPPP 580 590 600 610 620 130 140 150 160 170 180 FLJ003 LPGSL-LHRPDLAEVLDVLGTSGPAAFYAGGNLTLEMVAEAQHAGGVITEEDFSNYSALV ::. :.: . . . . : . :: .: . ::: . . : . .: . KIAA10 PPGATPTSPPELFQYFGPQALGQPQTPLAGPGLRPDKPLEAQ-----LLLNGFHHVGAPA 630 640 650 660 670 680 190 200 210 220 230 FLJ003 EK-PVCGVYRGDLSPGSQGPPS---GEASQSMATSFWPRDSSPFHRRETKAVSYLGSQLL .: :. . :.::: .. ::: : .:.:. :: : :: KIAA10 RKFPTSAP--GSLSPDAHLPPSQLLGSSSDSLPTSPPPDDSLSLKVFRCLVCQAFSTDSL 690 700 710 720 730 740 240 FLJ003 KQTRVSPPSEK KIAA10 ELLLYHCSIGRSLPEAEWKEVAGDTHRCKLCCYGTQLKANFQLHLKTDKHAQKYQLAAHL 750 760 770 780 790 800 >>FLJ00042 ( 452 res) as00042 (452 aa) initn: 81 init1: 51 opt: 101 Z-score: 94.3 bits: 25.8 E(): 4.7 Smith-Waterman score: 104; 31.897% identity (50.000% similar) in 116 aa overlap (23-135:101-202) 10 20 30 40 FLJ003 WRRVESLRFGAQAREALSSSLLLRPPPHLIP--PSPGGGLKRG-GLGRALRH ::: ..: :.: :: .:: .:: :: FLJ000 TWSCLTWSHPALSCDPTSPERVWGVPQSEPLRPAVLFLPQFPNPRGGTRRGPALGAAL-- 80 90 100 110 120 50 60 70 80 90 100 FLJ003 PCLALNRLLGVRALRVGHSAPIYPIYCASHPVQSWRPALPSLPSLPLARALAEQLPPNMS :. . : :: . . :.. : : :. :.: ::. : .:: .: FLJ000 -GLGPSDL-GVFGSHWGQTDEAAPAACLLPPALFLWPGLG--PSVGL------DLPLLLS 130 140 150 160 170 110 120 130 140 150 160 FLJ003 ERFRETFLPSGRPPLPGSLLHRPDLAEVLDVLGTSGPAAFYAGGNLTLEMVAEAQHAGGV .. :.: ::: .: .: FLJ000 PS--QAHAPAGSHVPAGSLTSQPGFAFQIRTKWIPLVNGGTTQGPRVPIILVGNKSDLRS 180 190 200 210 220 230 >>KIAA1971 ( 830 res) fk08985 (830 aa) initn: 57 init1: 57 opt: 103 Z-score: 93.6 bits: 26.6 E(): 5.1 Smith-Waterman score: 103; 32.479% identity (46.154% similar) in 117 aa overlap (10-123:646-756) 10 20 30 FLJ003 WRRVESLRFGAQAREALSSSLLLRPPPHLIPPSPGGGLK : :.. : : : ::: :: : KIAA19 GVPLSEAGNVKSPKCQNCHGNIPVQVFVPVGDQTHSKSSEELSLPPPPPPPPPPPPPPPP 620 630 640 650 660 670 40 50 60 70 80 90 FLJ003 RGGLGRALRHPCLA-LNRLLGVRALRVGHSAPIYPIYCASHPVQSWRPALPSLPSLPLAR ::: : .. :: :: : . : :. : : :.. :: :: :. KIAA19 PPPPLRALSSSSQAATHQNLGFRA-PVKDDQP-RPLVCES-PAE--RPR-DSLESFSCPG 680 690 700 710 720 100 110 120 130 140 150 FLJ003 ALAEQLPPNMSER--FRETFLPSGRPPLPGSLLHRPDLAEVLDVLGTSGPAAFYAGGNLT .. : : : .:.. .:. ::: KIAA19 SMDEVLASLRHGRAPLRKVEVPAVRPPHASINEHILAAIRQGVKLKKVHPDLGPNPSSKP 730 740 750 760 770 780 >>KIAA1357 ( 836 res) fj01906 (836 aa) initn: 142 init1: 57 opt: 102 Z-score: 92.8 bits: 26.4 E(): 5.7 Smith-Waterman score: 102; 33.929% identity (51.786% similar) in 56 aa overlap (73-127:216-271) 50 60 70 80 90 100 FLJ003 LGRALRHPCLALNRLLGVRALRVGHSAPIYPIYCASHPVQSWRPALPSLP-SLPLARALA : .: : : . : ::. : :::: : KIAA13 VTDCSQGSPLPHSPVFPPPPPEALIPFCSPPDWCLSPPRPALSPILPDSPVSLPLPPPLL 190 200 210 220 230 240 110 120 130 140 150 160 FLJ003 EQLPPNMSERFRETFLPSGRPPLPGSLLHRPDLAEVLDVLGTSGPAAFYAGGNLTLEMVA . : . . :. . :::. .: KIAA13 PSSEPPPAPPLDPKFMKDTRPPFTNSGQPESSRGSLRPPSTKEETSRPPMPLITTEALQM 250 260 270 280 290 300 >>FLJ00320 ( 267 res) sh07586 (267 aa) initn: 56 init1: 56 opt: 96 Z-score: 92.1 bits: 24.7 E(): 6.2 Smith-Waterman score: 96; 32.530% identity (51.807% similar) in 83 aa overlap (29-111:35-110) 10 20 30 40 50 FLJ003 WRRVESLRFGAQAREALSSSLLLRPPPHLIPPSPGGGLKRGGLGRALRHPCLALNRLL : :: : : : : . :. :: :. FLJ003 VSLFSGSWGGCALALCKAIALSVSSAGLWVLAPPEPTGHLVIPGTS-PLEPPCPWLDS-- 10 20 30 40 50 60 60 70 80 90 100 110 FLJ003 GVRALRVGHSAPIYPIYCASHPVQSWRPALPSLPSLPLARALAEQLPPNMSERFRETFLP . : :. :. . :: : .: :: :.::. : .. .. : .. :: FLJ003 HIFQCRFGKMLPLEKAF-AS-PRSS--PAPPDLPTPGSAAGVQQEEPETIPERTPADLEF 70 80 90 100 110 120 130 140 150 160 170 FLJ003 SGRPPLPGSLLHRPDLAEVLDVLGTSGPAAFYAGGNLTLEMVAEAQHAGGVITEEDFSNY FLJ003 SRLRFREFVYQEAAGPHQTLARLHELCRQWLMPEARSKEQMLELLVLEQFLGILPDKVRP 120 130 140 150 160 170 249 residues in 1 query sequences 2210745 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:28 2009 done: Fri Feb 27 10:51:28 2009 Total Scan time: 0.410 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]