# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh06588.fasta.huge -Q ../query/FLJ00158.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00158, 308 aa vs ./tmplib.10216 library 2210686 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.6587+/-0.00403; mu= 8.0171+/- 0.271 mean_var=105.8156+/-23.282, 0's: 0 Z-trim: 3 B-trim: 0 in 0/40 Lambda= 0.124681 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00356 ( 851 res) sh02495 ( 851) 113 30.8 0.33 KIAA1968 ( 860 res) fk04713 ( 860) 113 30.9 0.34 FLJ00281 ( 1495 res) sh01915 (1495) 113 31.1 0.5 KIAA1590 ( 1393 res) fj09048y1 (1393) 106 29.8 1.1 KIAA1160 ( 351 res) hj01067 ( 351) 95 27.2 1.7 KIAA1429 ( 1795 res) fh08353 (1795) 102 29.2 2.2 KIAA0297 ( 1271 res) hf00325 (1271) 97 28.1 3.2 KIAA0329 ( 1417 res) hg00872 (1417) 97 28.2 3.5 KIAA0800 ( 1521 res) hg03850s1 (1521) 96 28.0 4.2 KIAA1915 ( 726 res) hf00664 ( 726) 91 26.8 4.6 KIAA1937 ( 704 res) fk04595 ( 704) 90 26.6 5.1 KIAA1762 ( 1460 res) fh27937(revised) (1460) 93 27.5 5.9 KIAA1162 ( 115 res) hj05107 ( 115) 77 23.5 7.2 KIAA1835 ( 623 res) fh08795s1 ( 623) 85 25.7 8.8 KIAA1387 ( 950 res) fj06480 ( 950) 87 26.2 9.2 KIAA1922 ( 370 res) fh11169 ( 370) 81 24.7 10 KIAA1693 ( 901 res) fj10588 ( 901) 86 26.0 10 KIAA0131 ( 942 res) ha01235 ( 942) 85 25.9 12 KIAA0539 ( 2046 res) pf00803 (2046) 89 26.9 12 KIAA1708 ( 1657 res) fj17878y1 (1657) 87 26.5 14 FLJ00200 ( 122 res) sj03670 ( 122) 72 22.6 14 KIAA2001 ( 689 res) bj00176 ( 689) 81 25.0 15 KIAA0339 ( 1709 res) hg01304(revised) (1709) 86 26.3 16 KIAA0348 ( 1443 res) hg01551(revised) (1443) 85 26.0 16 KIAA0360 ( 1019 res) hh00062s1 (1019) 83 25.5 16 KIAA1245 ( 892 res) hg04073 ( 892) 82 25.3 16 FLJ00123 ( 255 res) sh00869 ( 255) 74 23.3 18 KIAA1408 ( 1298 res) fh04333(revised) (1298) 83 25.6 19 KIAA0022 ( 231 res) ha00480 ( 231) 72 22.9 22 KIAA0888 ( 684 res) hk07993 ( 684) 78 24.5 22 KIAA1215 ( 575 res) fh01854 ( 575) 77 24.2 22 KIAA0162 ( 1730 res) ha03982 (1730) 83 25.8 23 KIAA0153 ( 638 res) ha00521 ( 638) 77 24.3 24 KIAA0342 ( 2467 res) bf03307 (2467) 84 26.1 26 KIAA0426 ( 613 res) hh01274 ( 613) 76 24.1 26 KIAA1476 ( 2142 res) fj04778s1 (2142) 83 25.8 27 KIAA1415 ( 1621 res) hg04328s1 (1621) 81 25.4 28 KIAA1156 ( 348 res) hh05667 ( 348) 72 23.1 29 KIAA1348 ( 545 res) fj00937 ( 545) 74 23.6 31 KIAA1645 ( 386 res) fg04139 ( 386) 72 23.1 31 FLJ00115 ( 757 res) as00115 ( 757) 75 24.0 35 KIAA0529 ( 952 res) hg02898s1 ( 952) 76 24.2 36 KIAA1646 ( 481 res) hk01650 ( 481) 72 23.2 37 FLJ00241 ( 286 res) sj07515 ( 286) 69 22.5 37 KIAA1912 ( 589 res) fj18220 ( 589) 73 23.5 37 FLJ00270 ( 352 res) sj07613 ( 352) 70 22.7 38 KIAA1235 ( 1485 res) fh08704 (1485) 78 24.8 38 FLJ00181 ( 368 res) sj01527 ( 368) 70 22.8 39 KIAA1176 ( 1101 res) hg02851a (1101) 76 24.3 40 KIAA1595 ( 471 res) fj09517 ( 471) 71 23.0 41 >>FLJ00356 ( 851 res) sh02495 (851 aa) initn: 84 init1: 84 opt: 113 Z-score: 114.9 bits: 30.8 E(): 0.33 Smith-Waterman score: 113; 26.316% identity (54.386% similar) in 114 aa overlap (198-301:49-159) 170 180 190 200 210 220 FLJ001 IVDLRHELTHKKMPHINDCRRGCYFVLDWLQKTYWC-----RQLENSLRETWELEEFREG :. : :... : ..:: :.. . FLJ003 EVAQVKPRPAPMASSETEIRWAEPGLGKGPQRRRWAWAEDKRDVDRSSSQSWEEERLFPN 20 30 40 50 60 70 230 240 250 260 270 280 FLJ001 IEEEDQEEDKNIVVDDIT--EQKPEPQDDGKSTESDVKADGDSKGSEEVDSHCKKALSHK . :: .. . . : :.:: ::.. . ...:. .:.::: : ::. FLJ003 ATSPELLEDFRLAQQHLPPLEWDPHPQPDGHQDSESGETSGEEAEAEDVDS---PASSHE 80 90 100 110 120 130 290 300 FLJ001 ELY---ERARELLVSYEEEQFTGGCAGCFSG : ...:.: .. :: . : : FLJ003 PLAWLPQQGRQLDMTEEEPDGTLGSLEVEEAGESSSRLGYEAGLSLEGHGNTSPMALGHG 140 150 160 170 180 190 >>KIAA1968 ( 860 res) fk04713 (860 aa) initn: 84 init1: 84 opt: 113 Z-score: 114.9 bits: 30.9 E(): 0.34 Smith-Waterman score: 113; 26.316% identity (54.386% similar) in 114 aa overlap (198-301:49-159) 170 180 190 200 210 220 FLJ001 IVDLRHELTHKKMPHINDCRRGCYFVLDWLQKTYWC-----RQLENSLRETWELEEFREG :. : :... : ..:: :.. . KIAA19 EVAQVKPRPAPMASSETEIRWAEPGLGKGPQRRRWAWAEDKRDVDRSSSQSWEEERLFPN 20 30 40 50 60 70 230 240 250 260 270 280 FLJ001 IEEEDQEEDKNIVVDDIT--EQKPEPQDDGKSTESDVKADGDSKGSEEVDSHCKKALSHK . :: .. . . : :.:: ::.. . ...:. .:.::: : ::. KIAA19 ATSPELLEDFRLAQQHLPPLEWDPHPQPDGHQDSESGETSGEEAEAEDVDS---PASSHE 80 90 100 110 120 130 290 300 FLJ001 ELY---ERARELLVSYEEEQFTGGCAGCFSG : ...:.: .. :: . : : KIAA19 PLAWLPQQGRQLDMTEEEPDGTLGSLEVEEAGESSSRLGYEAGLSLEGHGNTSPMALGHG 140 150 160 170 180 190 >>FLJ00281 ( 1495 res) sh01915 (1495 aa) initn: 84 init1: 84 opt: 113 Z-score: 111.8 bits: 31.1 E(): 0.5 Smith-Waterman score: 113; 26.316% identity (54.386% similar) in 114 aa overlap (198-301:49-159) 170 180 190 200 210 220 FLJ001 IVDLRHELTHKKMPHINDCRRGCYFVLDWLQKTYWC-----RQLENSLRETWELEEFREG :. : :... : ..:: :.. . FLJ002 EVAQVKPRPAPMASSETEIRWAEPGLGKGPQRRRWAWAEDKRDVDRSSSQSWEEERLFPN 20 30 40 50 60 70 230 240 250 260 270 280 FLJ001 IEEEDQEEDKNIVVDDIT--EQKPEPQDDGKSTESDVKADGDSKGSEEVDSHCKKALSHK . :: .. . . : :.:: ::.. . ...:. .:.::: : ::. FLJ002 ATSPELLEDFRLAQQHLPPLEWDPHPQPDGHQDSESGETSGEEAEAEDVDS---PASSHE 80 90 100 110 120 130 290 300 FLJ001 ELY---ERARELLVSYEEEQFTGGCAGCFSG : ...:.: .. :: . : : FLJ002 PLAWLPQQGRQLDMTEEEPDGTLGSLEVEEAGESSSRLGYEAGLSLEGHGNTSPMALGHG 140 150 160 170 180 190 >>KIAA1590 ( 1393 res) fj09048y1 (1393 aa) initn: 70 init1: 44 opt: 106 Z-score: 105.4 bits: 29.8 E(): 1.1 Smith-Waterman score: 106; 22.785% identity (56.329% similar) in 158 aa overlap (145-298:621-770) 120 130 140 150 160 170 FLJ001 KLLDVTGGLGTDELRLLYGMALVRFVNLISERKTKFAKVPLKCLAQEVNIPDWIVDLRHE :.: : :. :. . :::. ... . KIAA15 MLYNPGLEFERQQREELEKLESKRKLIEEMEEKQKSDKAELERMQQEVETQRKETEIVQL 600 610 620 630 640 650 180 190 200 210 220 230 FLJ001 LTHKKMPHINDCRRGCYFVLDWLQKTYWCRQL--ENSLRETWELEEFREGIEEEDQEEDK .:. . .: . . . :. .. :. ::: :.: .... :::. KIAA15 QIRKQEESL---KRRSFHIENKLKDLLAEKEKFEEERLREQQEIE-----LQKKRQEEET 660 670 680 690 700 240 250 260 270 280 290 FLJ001 NIVVDDITEQKPEPQDDGKSTESDVKADGDSKGSEEVDSHCKKALSHKELYERARE--LL . :.. .. : ... :. . .. . :. .:. ... : : .:.: :. .: .: KIAA15 FLRVQEELQRLKELNNNEKAEKFQIFQELDQLQKEKDEQYAKLELEKKRLEEQEKEQVML 710 720 730 740 750 760 300 FLJ001 VSYEEEQFTGGCAGCFSG :.. :::. KIAA15 VAHLEEQLREKQEMIQLLRRGEVQWVEEEKRDLEGIRESLLRVKEARAGGDEDGEELEKA 770 780 790 800 810 820 >>KIAA1160 ( 351 res) hj01067 (351 aa) initn: 52 init1: 52 opt: 95 Z-score: 102.3 bits: 27.2 E(): 1.7 Smith-Waterman score: 95; 25.210% identity (53.782% similar) in 119 aa overlap (197-308:193-308) 170 180 190 200 210 220 FLJ001 WIVDLRHELTHKKMPHINDCRRGCYFVLDWLQKTYWCRQLENSLRETWELE-EFR--EGI :.. : ..:. : : :. : : : .: KIAA11 PPRKTRAELMKAIDFEYYGYLDEDDGVIVPLEQEYE-KKLRAELVEKWKAEREARLARGE 170 180 190 200 210 220 230 240 250 260 270 FLJ001 EEEDQEEDKNIVVDDITEQKPEPQDD----GKSTESDVKADGDSKGSEEVDSHCKKALSH .::..::...: . .::.. . . . : .... : ...:.. . . KIAA11 KEEEEEEEEEINIYAVTEEESDEEGSQEKGGDDSQQKFIAHVPVPSQQEIEEALVRRKKM 230 240 250 260 270 280 280 290 300 FLJ001 KELYERARELLVSYEEEQFTGGCAGCFSG . : . : : : . :: :: :: KIAA11 ELLQKYASETLQAQSEEARR--LLGCRSGTRPARSGSAPSPRATTAVPMGPSLPTTSPRG 290 300 310 320 330 >>KIAA1429 ( 1795 res) fh08353 (1795 aa) initn: 74 init1: 74 opt: 102 Z-score: 100.1 bits: 29.2 E(): 2.2 Smith-Waterman score: 102; 35.385% identity (66.154% similar) in 65 aa overlap (207-271:240-301) 180 190 200 210 220 230 FLJ001 HKKMPHINDCRRGCYFVLDWLQKTYWCRQLENSLRETWELEEFREGIEEEDQEEDKNIVV :.. .: : :. . ::::..:: .: KIAA14 PHREDYFEPISPDRNSVPQEGQYSDEGEVEEEQQEEGEEDEDDVDVEEEEDEDEDDRRTV 210 220 230 240 250 260 240 250 260 270 280 290 FLJ001 DDITEQKPEPQDDGKSTESDVKADGDSKGSEEVDSHCKKALSHKELYERARELLVSYEEE :.: :. : .:. . : : ...::. : :...: KIAA14 DSIPEE--EEEDEEEEGEEDEEGEGDD-GYEQISSDEDGIADLERETFKYPNFDVEYTAE 270 280 290 300 310 320 300 FLJ001 QFTGGCAGCFSG KIAA14 DLASVPPMTYDPYDRELVPLLYFSCPYKTTFEIEISRMKDQGPDKENSGAIEASVKLTEL 330 340 350 360 370 380 >>KIAA0297 ( 1271 res) hf00325 (1271 aa) initn: 74 init1: 54 opt: 97 Z-score: 97.2 bits: 28.1 E(): 3.2 Smith-Waterman score: 98; 31.387% identity (53.285% similar) in 137 aa overlap (5-126:648-782) 10 20 30 FLJ001 AEGCAERRGTEPVVELSMSWESGAGPGLGSQGMD :: : ... :: . .::: : .. KIAA02 YAHGLPSSSSETSVTELGPSCSQQDLSRLGAEDAGLLKPDQFAESWMGYSGPGYGI--LS 620 630 640 650 660 670 40 50 60 70 80 FLJ001 LVWSAWYGKCVKGKGSLPLSA-HGIVVAWLSRAEW-DQVTV-----YLFCDDHKLQR-YA :: : : :. ::.: :: : . : . . .::.: :. ..: .: .: KIAA02 LVVSEKYIWCLDYKGGLFCSALPGAGLRWQKFEDAVQQVAVSPSGALLWKIEQKSNRAFA 680 690 700 710 720 730 90 100 110 120 130 FLJ001 LNRITVWRSRSGNE-LPLAV-----ASTADLIRCKL-LDVTGGLGTDELRLLYGMALVRF ...:. .: : :: :: .:: .:: . : . ::..: KIAA02 CGKVTIKGKRHWYEALPQAVFVALSDDTAWIIRTSGDLYLQTGLSVDRPCARAVKVDCPY 740 750 760 770 780 790 140 150 160 170 180 190 FLJ001 VNLISERKTKFAKVPLKCLAQEVNIPDWIVDLRHELTHKKMPHINDCRRGCYFVLDWLQK KIAA02 PLSQITARNNVVWALTEQRALLYREGVSSFCPEGEQWKCDIVSERQALEPVCITLGDQQT 800 810 820 830 840 850 >>KIAA0329 ( 1417 res) hg00872 (1417 aa) initn: 74 init1: 54 opt: 97 Z-score: 96.6 bits: 28.2 E(): 3.5 Smith-Waterman score: 98; 31.387% identity (53.285% similar) in 137 aa overlap (5-126:794-928) 10 20 30 FLJ001 AEGCAERRGTEPVVELSMSWESGAGPGLGSQGMD :: : ... :: . .::: : .. KIAA03 YAHGLPSSSSETSVTELGPSCSQQDLSRLGAEDAGLLKPDQFAESWMGYSGPGYGI--LS 770 780 790 800 810 820 40 50 60 70 80 FLJ001 LVWSAWYGKCVKGKGSLPLSA-HGIVVAWLSRAEW-DQVTV-----YLFCDDHKLQR-YA :: : : :. ::.: :: : . : . . .::.: :. ..: .: .: KIAA03 LVVSEKYIWCLDYKGGLFCSALPGAGLRWQKFEDAVQQVAVSPSGALLWKIEQKSNRAFA 830 840 850 860 870 880 90 100 110 120 130 FLJ001 LNRITVWRSRSGNE-LPLAV-----ASTADLIRCKL-LDVTGGLGTDELRLLYGMALVRF ...:. .: : :: :: .:: .:: . : . ::..: KIAA03 CGKVTIKGKRHWYEALPQAVFVALSDDTAWIIRTSGDLYLQTGLSVDRPCARAVKVDCPY 890 900 910 920 930 940 140 150 160 170 180 190 FLJ001 VNLISERKTKFAKVPLKCLAQEVNIPDWIVDLRHELTHKKMPHINDCRRGCYFVLDWLQK KIAA03 PLSQITARNNVVWALTEQRALLYREGVSSFCPEGEQWKCDIVSERQALEPVCITLGDQQT 950 960 970 980 990 1000 >>KIAA0800 ( 1521 res) hg03850s1 (1521 aa) initn: 163 init1: 75 opt: 96 Z-score: 95.2 bits: 28.0 E(): 4.2 Smith-Waterman score: 96; 29.213% identity (57.303% similar) in 89 aa overlap (194-282:1389-1475) 170 180 190 200 210 220 FLJ001 IPDWIVDLRHELTHKKMPHINDCRRGCYFVLDWLQKTYWCRQLENSLRETWELEEFREGI .: :. :: : . .. : :. .: KIAA08 IATIDVKRNIFDLCTDTKDCYLAVIENQGSMDALNMDTVCRLYEVGRQRLAEDEDEEEDQ 1360 1370 1380 1390 1400 1410 230 240 250 260 270 280 FLJ001 EEEDQEEDKNIVVDDITEQKPEPQDDGKSTESDVKADGDSKGSEEVDSHCKKALSHKELY :::.:::. . :: :.. : : . :.... : ..... : :. . : .:: KIAA08 EEEEQEEEDDDEDDDDTDDLDE-LDTDQLLEAELEEDDNNENAGE-DGDNDFSPSDEELA 1420 1430 1440 1450 1460 1470 290 300 FLJ001 ERARELLVSYEEEQFTGGCAGCFSG KIAA08 NLLEEGEDGEDEDSDADEEVELILGDTDSSDNSDLEDDIILSLNE 1480 1490 1500 1510 1520 >>KIAA1915 ( 726 res) hf00664 (726 aa) initn: 61 init1: 61 opt: 91 Z-score: 94.4 bits: 26.8 E(): 4.6 Smith-Waterman score: 91; 24.000% identity (58.000% similar) in 100 aa overlap (200-297:193-290) 170 180 190 200 210 220 FLJ001 DLRHELTHKKMPHINDCRRGCYFVLDWLQKTYWCRQLENSLRETWEL--EEFREGIEEED : : .. :. ... :: ..: : :.. . KIAA19 SDSQEALFSKSSRGCLQNEKQDETLSSSEITLWTEKQSNGDKKSIELNDQKFNELIKNCN 170 180 190 200 210 220 230 240 250 260 270 280 FLJ001 QEEDKNIVVDDITEQKPEPQDDGKSTESDVKADGDSKGSEEVDSHCKKALSHKELYERAR ... ..:.:: .::: . :. ... . . :: :: .. :. : . KIAA19 KHDGRGIIVDARQLPSPEPCEIQKNLNDNEMLFHSCQMVEE--SHEEEELKPPEQEIEID 230 240 250 260 270 280 290 300 FLJ001 ELLVSYEEEQFTGGCAGCFSG . ... ::.: KIAA19 RNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGD 290 300 310 320 330 340 308 residues in 1 query sequences 2210686 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:42:30 2009 done: Fri Feb 27 10:42:30 2009 Total Scan time: 0.450 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]