# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh06608.fasta.huge -Q ../query/FLJ00159.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00159, 567 aa vs ./tmplib.10216 library 2210427 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 7.2172+/-0.00706; mu= 9.0210+/- 0.474 mean_var=345.5029+/-77.607, 0's: 0 Z-trim: 1 B-trim: 27 in 1/39 Lambda= 0.069000 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1623 ( 1236 res) fj04650 (1236) 179 32.1 0.39 KIAA0505 ( 200 res) hh00043 ( 200) 150 27.9 1.2 KIAA1311 ( 889 res) fh11512 ( 889) 137 27.6 5.9 KIAA1306 ( 1154 res) fh05845 (1154) 137 27.8 6.8 KIAA0876 ( 1119 res) hh03683 (1119) 135 27.6 7.6 KIAA1814 ( 1285 res) ph00952 (1285) 134 27.6 8.8 KIAA1205 ( 1217 res) fg03511a (1217) 133 27.5 9.1 KIAA0348 ( 1443 res) hg01551(revised) (1443) 132 27.5 11 KIAA0339 ( 1709 res) hg01304(revised) (1709) 133 27.7 11 KIAA1856 ( 1134 res) fh03203 (1134) 129 27.0 12 KIAA0820 ( 892 res) bg00036 ( 892) 127 26.6 12 KIAA0819 ( 989 res) hh01037 ( 989) 127 26.7 12 KIAA1142 ( 467 res) hh05864 ( 467) 120 25.5 14 KIAA1059 ( 1297 res) hh12158 (1297) 126 26.8 15 KIAA0198 ( 562 res) ha02521 ( 562) 118 25.4 18 KIAA1197 ( 1487 res) fg01844 (1487) 125 26.8 18 FLJ00253 ( 349 res) sj09455 ( 349) 112 24.5 21 KIAA0616 ( 634 res) hg03623 ( 634) 116 25.3 21 KIAA1727 ( 1130 res) pg00153 (1130) 120 26.1 22 FLJ00034 ( 1343 res) as00034 (1343) 121 26.3 22 KIAA0775 ( 639 res) hk05255 ( 639) 115 25.2 23 KIAA0464 ( 586 res) hg01093(revised) ( 586) 114 25.0 24 KIAA1902 ( 1112 res) hj04383 (1112) 118 25.9 24 FLJ00084 ( 641 res) as00084 ( 641) 114 25.1 25 KIAA0900 ( 503 res) hk09606s1 ( 503) 112 24.7 25 KIAA0298 ( 901 res) hf00341(revised) ( 901) 116 25.6 25 FLJ00018 ( 1430 res) as00018 (1430) 119 26.2 26 KIAA1887 ( 967 res) fk02232 ( 967) 116 25.6 26 FLJ00066 ( 162 res) as00066 ( 162) 103 23.0 26 KIAA0280 ( 291 res) ha06179 ( 291) 106 23.7 29 KIAA1951 ( 679 res) fj05532 ( 679) 112 25.0 29 KIAA0595 ( 1666 res) hj02929s1 (1666) 118 26.2 30 KIAA1545 ( 968 res) fj14026s1 ( 968) 114 25.4 30 KIAA1227 ( 1069 res) fh04710 (1069) 114 25.5 32 KIAA1366 ( 550 res) fj02695 ( 550) 109 24.5 32 KIAA0269 ( 567 res) ha06751 ( 567) 109 24.5 33 KIAA1608 ( 872 res) fj20142 ( 872) 112 25.1 33 FLJ00224 ( 896 res) sj06244 ( 896) 112 25.2 33 KIAA0244 ( 2044 res) ha04644s1 (2044) 117 26.2 35 KIAA0324 ( 2800 res) ee08846s1 (2800) 119 26.7 36 KIAA1269 ( 531 res) hk04070 ( 531) 107 24.3 36 KIAA0886 ( 1233 res) hk07722 (1233) 113 25.5 36 KIAA1986 ( 334 res) pg00636 ( 334) 103 23.5 38 FLJ00139 ( 585 res) sh03241 ( 585) 107 24.3 38 KIAA1486 ( 677 res) fj07162 ( 677) 108 24.6 38 KIAA0407 ( 2143 res) hg01339 (2143) 116 26.2 39 KIAA1542 ( 1654 res) hh03408 (1654) 114 25.8 39 KIAA0790 ( 1319 res) hk05609 (1319) 112 25.4 40 KIAA0363 ( 1522 res) hh00103 (1522) 113 25.6 40 KIAA1810 ( 579 res) fk03376 ( 579) 106 24.2 40 >>KIAA1623 ( 1236 res) fj04650 (1236 aa) initn: 236 init1: 144 opt: 179 Z-score: 113.8 bits: 32.1 E(): 0.39 Smith-Waterman score: 179; 36.709% identity (70.886% similar) in 79 aa overlap (31-108:216-288) 10 20 30 40 50 60 FLJ001 GQVPPAQGEGWAGLERALGWDPGMGALTLCHPSQGEGRLKKTWARWRHMFREQPVDEIRN : .. .:: :.:. . . ..::.:.: . KIAA16 EALHNVRFLEDQPIIPELAARGIIQQVFPVHEQRILNRLMKSWV--QAVCENQPLDDICD 190 200 210 220 230 240 70 80 90 100 110 FLJ001 YFGEKVALYFVWLGWYTYMLVPAALTGLLVFLSGFSLFEASQISKEI-CEAHDILMCPLG ::: :.:.::.:::.:: .: :. : ... .. ::.: :... : KIAA16 YFGVKIAMYFAWLGFYTSAMVYPAVFGSVLY----TFTEADQTSRDVSCVVFALFNVIWS 250 260 270 280 290 120 130 140 150 160 170 FLJ001 DHSRRYQRLSETCTFAKVCRLRVHPRACGRWERCIHPKRGRSRPGALQSCSAFPTGLTGR KIAA16 TLFLEEWKRRGAELAYKWGTLDSPGEAVEEPRPQFRGVRRISPITRAEEFYYPPWKRLLF 300 310 320 330 340 350 >>KIAA0505 ( 200 res) hh00043 (200 aa) initn: 83 init1: 83 opt: 150 Z-score: 105.3 bits: 27.9 E(): 1.2 Smith-Waterman score: 150; 39.394% identity (50.505% similar) in 99 aa overlap (170-264:108-192) 140 150 160 170 180 190 FLJ001 LRVHPRACGRWERCIHPKRGRSRPGALQSCSAFPTGLTGRPSPSPPAHFLSPPAPFPGFP :..: : . : ::: : : :.:.:: KIAA05 PSFSLPTFPLPSSPLLSAPLLFPPLPSAPLSSLP--LLSLPLPSP----LFPSLPLPSFP 80 90 100 110 120 130 200 210 220 230 240 250 FLJ001 ASLPGSPAP-LPSSPTSSPAHLSPPQ--LTHLFDNDGTVVFAIFMALWGELLRDASA-GP : :.: ::::: :: :::: :: : .. : : ::. . :: KIAA05 FPSPPFPSPPLPSSPLPSPLLLSPPLTCLTLLCQGPGQG--------WPLTLRSKWVWGP 140 150 160 170 180 260 270 280 290 300 310 FLJ001 GEVPAQAPRSTWRSAVMPLLAPAAATVFLEIWKRQRARVVLHWDLYVWDEEQEEMALQLI : .: : KIAA05 GLSGIRAARQGLLQEQA 190 200 >>KIAA1311 ( 889 res) fh11512 (889 aa) initn: 94 init1: 94 opt: 137 Z-score: 92.5 bits: 27.6 E(): 5.9 Smith-Waterman score: 137; 44.444% identity (55.556% similar) in 63 aa overlap (165-224:138-196) 140 150 160 170 180 190 FLJ001 AKVCRLRVHPRACGRWERCIHPKRGRSRPGALQSCSAFPTGLTGRPSPSPPAHFLSPPAP :: : :: : : : ::. .: :: : KIAA13 CRDYDERGFCVLGDLCQFDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPPPG-MLMPPMP 110 120 130 140 150 160 200 210 220 230 240 250 FLJ001 FPGFPASLPGSPAPLPSSPTSSPAH---LSPPQLTHLFDNDGTVVFAIFMALWGELLRDA :: :. :: :.: :. : .:.: : :: KIAA13 GPG-PGPGPG-PGPGPG-PGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPPITQSSLINSR 170 180 190 200 210 220 260 270 280 290 300 310 FLJ001 SAGPGEVPAQAPRSTWRSAVMPLLAPAAATVFLEIWKRQRARVVLHWDLYVWDEEQEEMA KIAA13 DQPGTSAVPNLASVGTRLPPPLPQNLLYTVSERQPMYSREHGAAASERLQLGTPPPLLAA 230 240 250 260 270 280 >>KIAA1306 ( 1154 res) fh05845 (1154 aa) initn: 147 init1: 85 opt: 137 Z-score: 91.5 bits: 27.8 E(): 6.8 Smith-Waterman score: 137; 37.333% identity (61.333% similar) in 75 aa overlap (156-224:997-1067) 130 140 150 160 170 180 FLJ001 QRLSETCTFAKVCRLRVHPRACGRWERCIHPKRGRSRPGALQSCSAFPTGLTGRPSPSP- : . : ... ...:.: .: :::.: KIAA13 TPTSKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAG-PSPAPS 970 980 990 1000 1010 1020 190 200 210 220 230 FLJ001 PAHFLSPPAPF---PGFPASLPGSPAPLPSSPTSSPAHL--SPPQLTHLFDNDGTVVFAI ::. .::: . :: : :: .::: : :: . :. .::. KIAA13 PAR--QPPAALAKPPGTPPSLGASPAK-PPSPGAPALHVPAKPPRAAAAAAAAAAAPPAP 1030 1040 1050 1060 1070 1080 240 250 260 270 280 290 FLJ001 FMALWGELLRDASAGPGEVPAQAPRSTWRSAVMPLLAPAAATVFLEIWKRQRARVVLHWD KIAA13 PEGASPGDSARQKLEETSACLAAALQAVEEKIRQEDAQGPRDSAAEKSTGSILDDIGSMF 1090 1100 1110 1120 1130 1140 >>KIAA0876 ( 1119 res) hh03683 (1119 aa) initn: 113 init1: 68 opt: 135 Z-score: 90.5 bits: 27.6 E(): 7.6 Smith-Waterman score: 135; 36.111% identity (50.000% similar) in 72 aa overlap (158-225:465-536) 130 140 150 160 170 180 FLJ001 LSETCTFAKVCRLRVHPRACGRWERCIHPKRGRSRPGALQSCSAFPT-GLTGRPSPSPPA ::. :: .: . :: : ::: KIAA08 AGPEVDPEEEEEEPQPLPHGREAEGAEEDGRGKLRPTKAKSERKKKSFGLLPPQLPPPPA 440 450 460 470 480 490 190 200 210 220 230 240 FLJ001 HFLSPPA---PFPGFPASLPGSPAPLPSSPTSSPAHLSPPQLTHLFDNDGTVVFAIFMAL :: : : : : : : .:: . :: .: .. ::.. KIAA08 HFPSEEALWLPSPLEPPVLGPGPAAMEESPLPAPLNVVPPEVPSEELEAKPRPIIPMLYV 500 510 520 530 540 550 250 260 270 280 290 300 FLJ001 WGELLRDASAGPGEVPAQAPRSTWRSAVMPLLAPAAATVFLEIWKRQRARVVLHWDLYVW KIAA08 VPRPGKAAFNQEHVSCQQAFEHFAQKGPTWKEPVSPMELTGPEDGAASSGAGRMETKARA 560 570 580 590 600 610 >>KIAA1814 ( 1285 res) ph00952 (1285 aa) initn: 129 init1: 84 opt: 134 Z-score: 89.4 bits: 27.6 E(): 8.8 Smith-Waterman score: 134; 37.079% identity (48.315% similar) in 89 aa overlap (143-223:1095-1178) 120 130 140 150 160 FLJ001 ILMCPLGDHSRRYQRLSETCTFAKVCRLRVHPRAC--GRWERCIHPKRGRS--RPGALQS :: . :: : : : . .: : KIAA18 TNSHAMGSFSGVAGGTVGGVFNHAVPSASAHPFGARVGRGAACGSATLGPSPLQAAASAS 1070 1080 1090 1100 1110 1120 170 180 190 200 210 220 FLJ001 CSAF--PTGLTGRPSPSPPAHFLSPPAPFPGFPASLPGSPA--PLPSSPTSSPAHLSPPQ :.: :... :: : :: :: :.: :: : ::: :. .: : : :: KIAA18 ASSFQAPASVETRPPPPPPP----PPPPLPP-PAHLGRSPAGPPVLHAPPPPNAALPPPP 1130 1140 1150 1160 1170 230 240 250 260 270 280 FLJ001 LTHLFDNDGTVVFAIFMALWGELLRDASAGPGEVPAQAPRSTWRSAVMPLLAPAAATVFL KIAA18 TLLASNPEPALLQSLASLPPNQAFLPPTSAASLPPANASLSIKLTSLPHKGARPSFTVHH 1180 1190 1200 1210 1220 1230 >>KIAA1205 ( 1217 res) fg03511a (1217 aa) initn: 126 init1: 90 opt: 133 Z-score: 89.1 bits: 27.5 E(): 9.1 Smith-Waterman score: 134; 38.235% identity (50.000% similar) in 68 aa overlap (163-223:621-687) 140 150 160 170 180 FLJ001 TFAKVCRLRVHPRACGRWERCIHPKRGRSRPGALQSCSAFPTGLTGRPSPSPPA----HF :.: .. . : : .: :.:: . KIAA12 LAGPKDTSTPDGPPLAPAAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPTPQP 600 610 620 630 640 650 190 200 210 220 230 240 FLJ001 LSPPAPFPGFPASLPGSP---APLPSSPTSSPAHLSPPQLTHLFDNDGTVVFAIFMALWG :: : : :: ::. : :: :::: : :: KIAA12 QPPPPPPPPQPA-LPSPPPLVAPTPSSPPPPPLPPPPPPAMPSPPPPPPPAAAPLAAPPE 660 670 680 690 700 250 260 270 280 290 300 FLJ001 ELLRDASAGPGEVPAQAPRSTWRSAVMPLLAPAAATVFLEIWKRQRARVVLHWDLYVWDE KIAA12 EPAAPSPEDPELPDTRPLHLAKKQETAAVCGETDEEAGESGGEGIFRERDEFVIRAEDIP 710 720 730 740 750 760 >>KIAA0348 ( 1443 res) hg01551(revised) (1443 aa) initn: 84 init1: 61 opt: 132 Z-score: 87.9 bits: 27.5 E(): 11 Smith-Waterman score: 132; 26.744% identity (53.488% similar) in 172 aa overlap (154-316:1279-1438) 130 140 150 160 170 FLJ001 RYQRLSETCTFAKVCRLRVHPRACGRWERCIHPKRGRSRPGA-----LQSCSAFPTGLTG . :.: .: :.: ::: : . ::: KIAA03 SHRKPASDEAPPGAGASVPPPLEAPPLVPKVPPRRKKSAPAAFHLQVLQSNSQLLQGLTY 1250 1260 1270 1280 1290 1300 180 190 200 210 220 230 FLJ001 RPSPSPPAHFLSPPAPFPGFPAS--LPGSPAPLPSSPTSSPAHLSPPQLTHLFDNDGTVV : :: .: ::: :: . : : : .:: :. .. :. . :. . KIAA03 NSSDSPSGH---PPAAGTVFPQGDFLSTSSA---TSPDSDGTKAMKPEAAPLLGDYQDPF 1310 1320 1330 1340 1350 1360 240 250 260 270 280 290 FLJ001 FAIFM--ALWGELLRDASAGPGEVPAQAPRSTWRSAVMPLLAPAAATVFLEIWKRQRARV . .. : .. . :. : . ...:. :. . :. : :.:. :. .. .. KIAA03 WNLLHHPKLLNNTWLSKSSDPLDSGTRSPK---RDPIDPVSAGASAAK-AELPPDHEHKT 1370 1380 1390 1400 1410 300 310 320 330 340 350 FLJ001 VLHWDLYVWDEEQEEMALQLINCPDYKLRPYQHSYLRSTVILVLTLLMICLMIGMAHVLV . :: . . :.:.. :::... KIAA03 LGHW-VTISDQEKRT-ALQVFDPLAKT 1420 1430 1440 >>KIAA0339 ( 1709 res) hg01304(revised) (1709 aa) initn: 107 init1: 84 opt: 133 Z-score: 87.8 bits: 27.7 E(): 11 Smith-Waterman score: 133; 26.163% identity (44.186% similar) in 172 aa overlap (156-324:1099-1265) 130 140 150 160 170 180 FLJ001 QRLSETCTFAKVCRLRVHPRACGRWERCIHPKRGRSRP-GALQSCSAFPTGLTGRPSPSP :.: . : : : :. .: :: KIAA03 EEERPAALPSASPPPREVPVPTPAPVEVPVPERVAGSPVTPLPEQEASPARPAGPTEESP 1070 1080 1090 1100 1110 1120 190 200 210 220 230 240 FLJ001 PAHFLSPPAPFPGFPASLPGSPAPLPSSPTSSPAHLSPPQLTHLFDNDGTVVFAIFMALW :. : :: : : :: ::: :. ::: : :: . . ... .. KIAA03 PSAPLRPPEPPAGPPA-----PAPRPDERPSSPIPLLPPPKKRRKTVSFSAIEVVPAPEP 1130 1140 1150 1160 1170 1180 250 260 270 280 290 300 FLJ001 GELLRDASAGPGEVPAQAPRSTWRSAV-MPL-LAPAAATVFLEIWKRQRARVVLHWDLYV . :: . .:::.. :. .:: : . . :. . :.:. . : KIAA03 PPATPPQAKFPGPASRKAPRGVERTIRNLPLDHASLVKSWPEEVSRGGRSRAGGRGRLTE 1190 1200 1210 1220 1230 1240 310 320 330 340 350 360 FLJ001 WDEEQEEMALQLINCPDYKLRPYQHSYLRSTVILVLTLLMICLMIGMAHVLVVYRVLASA .: . ..: : : : KIAA03 EEEAEPGTEVDLAVLADLALTPARRGLPALPAVEDSEATETSDEAERPRPLLSHILLEHN 1250 1260 1270 1280 1290 1300 >>KIAA1856 ( 1134 res) fh03203 (1134 aa) initn: 184 init1: 112 opt: 129 Z-score: 87.2 bits: 27.0 E(): 12 Smith-Waterman score: 136; 35.897% identity (47.436% similar) in 78 aa overlap (157-229:929-1004) 130 140 150 160 170 180 FLJ001 RLSETCTFAKVCRLRVHPRACGRWERCIHPKRGR-SRPGAL---QSCSAFPT-GLTGRPS :.:. . ::: :.:. . . : KIAA18 TKTSRCAKGGPLSPRKDAGRAKDRKDPRKKKKGKEAGPGAGLPPPRAPALPSEARAPPPP 900 910 920 930 940 950 190 200 210 220 230 240 FLJ001 PSPPAHFLSPPAPFPGFPASLPGSPAPLPSSPTSSPAHLSPPQLTHLFDNDGTVVFAIFM : :: : :: :.: : :: ::: : : :: : :. KIAA18 PPPPPHPPLPPPPLP--PPPLPLRLPPLPPPPLPRPHPPPPPPLPPLLPPPQTRTLPAAR 960 970 980 990 1000 1010 250 260 270 280 290 300 FLJ001 ALWGELLRDASAGPGEVPAQAPRSTWRSAVMPLLAPAAATVFLEIWKRQRARVVLHWDLY KIAA18 TMRQPPPPRLALPRRRRSPPRPPSRPARRGPRPTPQARRRPRPSPRRLLRSPHSLCSPRL 1020 1030 1040 1050 1060 1070 567 residues in 1 query sequences 2210427 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:42:31 2009 done: Fri Feb 27 10:42:31 2009 Total Scan time: 0.610 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]