# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sh07047.fasta.huge -Q ../query/FLJ00317.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00317, 111 aa vs ./tmplib.10216 library 2210883 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 6.1790+/-0.00656; mu= 8.8766+/- 0.442 mean_var=260.0673+/-56.800, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.079530 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1205 ( 1217 res) fg03511a (1217) 155 29.6 0.41 KIAA1075 ( 1505 res) hj06716s1 (1505) 139 27.9 1.6 KIAA1471 ( 1421 res) fj02383s1 (1421) 134 27.3 2.3 KIAA0458 ( 1552 res) ef01252 (1552) 128 26.7 3.9 KIAA1802 ( 821 res) fj21631 ( 821) 124 25.8 3.9 KIAA0495 ( 209 res) hg00106 ( 209) 115 23.7 4.1 KIAA0407 ( 2143 res) hg01339 (2143) 126 26.7 5.4 KIAA1100 ( 444 res) hk07907 ( 444) 116 24.4 5.5 KIAA1986 ( 334 res) pg00636 ( 334) 113 23.8 6.1 FLJ00190 ( 521 res) sj02368 ( 521) 113 24.2 7.6 FLJ00237 ( 351 res) sj07406 ( 351) 109 23.4 8.6 KIAA1522 ( 1044 res) fh14706(revised) (1044) 115 24.9 9.1 KIAA1994 ( 1117 res) bh00052 (1117) 113 24.7 11 KIAA0754 ( 1174 res) hh06485 (1174) 113 24.8 11 KIAA1875 ( 922 res) pf00972 ( 922) 111 24.4 12 FLJ00353 ( 1766 res) sh01144 (1766) 115 25.3 12 FLJ00252 ( 819 res) sj09394 ( 819) 110 24.2 12 FLJ00378 ( 855 res) sj00210 ( 855) 110 24.2 12 FLJ00139 ( 585 res) sh03241 ( 585) 107 23.6 13 KIAA1740 ( 1119 res) pj00674 (1119) 111 24.5 13 FLJ00163 ( 521 res) sh06933 ( 521) 106 23.4 13 KIAA0445 ( 1919 res) hg00102s1 (1919) 114 25.2 13 FLJ00086 ( 399 res) as00086 ( 399) 104 22.9 14 KIAA1357 ( 836 res) fj01906 ( 836) 108 23.9 14 KIAA1768 ( 1207 res) ph00672(revised) (1207) 110 24.4 15 FLJ00084 ( 641 res) as00084 ( 641) 106 23.5 15 FLJ00160 ( 1696 res) sh06621 (1696) 112 24.9 15 KIAA1375 ( 546 res) fj04426 ( 546) 102 22.9 19 KIAA1668 ( 791 res) fh11717 ( 791) 104 23.4 19 KIAA1298 ( 738 res) fg04206 ( 738) 103 23.3 20 KIAA0872 ( 552 res) hk07213 ( 552) 101 22.8 20 KIAA0819 ( 989 res) hh01037 ( 989) 104 23.6 21 KIAA1029 ( 1015 res) fh00363 (1015) 104 23.6 21 FLJ00371 ( 625 res) sh06716 ( 625) 101 22.9 21 KIAA1311 ( 889 res) fh11512 ( 889) 103 23.4 22 KIAA1308 ( 745 res) fh08652 ( 745) 101 23.0 23 FLJ00193 ( 491 res) sj02629 ( 491) 98 22.4 24 KIAA0284 ( 1573 res) pf09542 (1573) 105 24.1 24 FLJ00185 ( 824 res) sj01856 ( 824) 101 23.1 24 KIAA0381 ( 1114 res) ah04695 (1114) 102 23.5 26 KIAA1115 ( 895 res) hk05464 ( 895) 100 23.1 28 KIAA1935 ( 441 res) fk03135(revised) ( 441) 95 22.0 29 KIAA0542 ( 1212 res) hg04325s1 (1212) 101 23.4 30 FLJ00318 ( 127 res) sh07374 ( 127) 87 20.1 30 KIAA0907 ( 569 res) hk10396 ( 569) 95 22.2 33 KIAA0437 ( 1605 res) hj00203s1 (1605) 101 23.6 34 KIAA1741 ( 1777 res) fh23254 (1777) 101 23.7 36 KIAA2001 ( 689 res) bj00176 ( 689) 95 22.3 36 KIAA1898 ( 1013 res) fk06427 (1013) 97 22.8 37 KIAA1681 ( 1236 res) fh23697 (1236) 98 23.1 38 >>KIAA1205 ( 1217 res) fg03511a (1217 aa) initn: 213 init1: 83 opt: 155 Z-score: 113.4 bits: 29.6 E(): 0.41 Smith-Waterman score: 155; 33.333% identity (47.059% similar) in 102 aa overlap (4-104:601-697) 10 20 30 FLJ003 RARDSPLEPGTPSFPTPGPG-LWDLQTVAVWGT :.: : .:. .::: : : .. :: KIAA12 KNRDLQESISSAISALDDPPLAGPKDTSTPDGP--PLAPAAAVPGPPPLPGLPSANSNGT 580 590 600 610 620 40 50 60 70 80 90 FLJ003 FLPTTLTGLGHTPEPALNPGPKGQPESLSPEVPLSSRLLSMPAWDSPANSHRAPETQPLP : : . : :. :.: ::. : : . : : : .:. : : : : KIAA12 PEPPLLE---EKPPPTPPPAPTPQPQPPPPPPPPQPALPSPPPLVAPTPSSPPPPPLPPP 630 640 650 660 670 680 100 110 FLJ003 PSLAEAGPPTDPLVVRNAG : : .:: : KIAA12 PPPAMPSPPPPPPPAAAPLAAPPEEPAAPSPEDPELPDTRPLHLAKKQETAAVCGETDEE 690 700 710 720 730 740 >>KIAA1075 ( 1505 res) hj06716s1 (1505 aa) initn: 118 init1: 57 opt: 139 Z-score: 102.7 bits: 27.9 E(): 1.6 Smith-Waterman score: 143; 32.432% identity (48.649% similar) in 111 aa overlap (6-105:1064-1169) 10 20 FLJ003 RARDSPLEPG--TPSFPTPGPGLWDLQTV------ :: :. .:.:: .:. : . KIAA10 QRLSPGEALPPVSQAGTGKAPELPSGSGPEPLAPSPVSPTFPPSSPSDWPQERSPGGHSD 1040 1050 1060 1070 1080 1090 30 40 50 60 70 80 FLJ003 -AVWGTFLPTTLTGLGHTPEPALNPGPKGQPESL--SPEVPLSSRLLSMPAWDSPANSHR : . .:::: :: :.: ::.: :.: :: .:. :.. . : : .: KIAA10 GASPRSPVPTTLPGLRHAPWQ----GPRGPPDSPDGSPLTPVPSQMPWLVASPEPPQSSP 1100 1110 1120 1130 1140 90 100 110 FLJ003 APETQPLPPSLAEAGPPTDPLVVRNAG .: :: : : :: KIAA10 TPAF-PLAASYDTNGLSQPPLPEKRHLPGPGQQPGPWGPEQASSPARGISHHVTFAPLLS 1150 1160 1170 1180 1190 1200 >>KIAA1471 ( 1421 res) fj02383s1 (1421 aa) initn: 120 init1: 56 opt: 134 Z-score: 99.8 bits: 27.3 E(): 2.3 Smith-Waterman score: 134; 27.103% identity (51.402% similar) in 107 aa overlap (6-105:852-956) 10 20 30 FLJ003 RARDSPLEPGTPSFPTPG--PGLWDLQTVAVWGTF :. :: .:.:. : : . . KIAA14 PHYLSGPLPPGTYSGPTQLIQPRAPGPHAMPVAPGPALYPAPAYTPELGLVPRSSPQHGV 830 840 850 860 870 880 40 50 60 70 80 90 FLJ003 LPTTLTGLGHTPEPALNPGPKGQPESLS-PEVPLSSR--LLSMPAWDSPANSHRAPETQP . . .:.: : : . :.. : ..: ::. .. : .. . ..: :: ::. .: KIAA14 VSSPYVGVG--PAPPVAGLPSAPPPQFSGPELAMAVRPATTTVDSIQAPIPSHTAPRPNP 890 900 910 920 930 100 110 FLJ003 LP--PSLAEAGPPTDPLVVRNAG : : :: .:: KIAA14 TPAPPPPCFPVPPPQPLPTPYTYPAGAKQPIPAQHHFSSGIPTGFPAPRIGPQPQPHPQP 940 950 960 970 980 990 >>KIAA0458 ( 1552 res) ef01252 (1552 aa) initn: 232 init1: 85 opt: 128 Z-score: 95.7 bits: 26.7 E(): 3.9 Smith-Waterman score: 132; 32.283% identity (46.457% similar) in 127 aa overlap (6-105:797-922) 10 20 30 FLJ003 RARDSPLEPGTPSFPTPGPGLWDLQTVAVWGTFLP : : : :.: : : : : . : KIAA04 ASQAPNQPQAPTAPVPHTHIQQAPALHPQRPPSPHPPPHPSPHPPLQPLTGSAGQPS-AP 770 780 790 800 810 820 40 50 60 70 FLJ003 T----TLTGLG----HTPE--PAL-NPGP-----------KGQ-PESLSPEVPLSSRLLS . : : : :. . : : .::: .:: : . :: . :. KIAA04 SHAQPPLHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQ 830 840 850 860 870 880 80 90 100 110 FLJ003 MPAWDSPANSHRAPETQPLPPS-LAEAG---PPTDPLVVRNAG .:: .: .:.. :. :::::. :: ::: :. KIAA04 LPASQSALQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSM 890 900 910 920 930 940 KIAA04 NANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQNLPPPPAS 950 960 970 980 990 1000 >>KIAA1802 ( 821 res) fj21631 (821 aa) initn: 104 init1: 104 opt: 124 Z-score: 95.7 bits: 25.8 E(): 3.9 Smith-Waterman score: 127; 27.660% identity (46.809% similar) in 94 aa overlap (8-101:322-404) 10 20 30 FLJ003 RARDSPLEPGTPSFPTPGPGLWDLQTVAVWGTFLPTT .:: :. : : : . : : . :. KIAA18 PSESPEPWKPFPAVSPEPRRPAPAVSPGSWKPGPPGSPRP----WKSNPSASSGPWKPAK 300 310 320 330 340 40 50 60 70 80 90 FLJ003 LTGLGHTPEPALNPGPKGQPESLSPEVPLSSRLLSMPAWDSPANSHRAPETQPLPPSLAE : :...::: :.:: . .: .: : . : . .. : : . KIAA18 -------PAPSVSPGPWKPIPSVSPGPWKPTPSVSSASWKSSSVSPSSWKSPPASPESWK 350 360 370 380 390 400 100 110 FLJ003 AGPPTDPLVVRNAG .::: KIAA18 SGPPELRKTAPTLSPEHWKAVPPVSPELRKPGPPLSPEIRSPAGSPELRKPSGSPDLWKL 410 420 430 440 450 460 >>KIAA0495 ( 209 res) hg00106 (209 aa) initn: 131 init1: 66 opt: 115 Z-score: 95.3 bits: 23.7 E(): 4.1 Smith-Waterman score: 128; 38.298% identity (52.128% similar) in 94 aa overlap (18-110:6-86) 10 20 30 40 50 60 FLJ003 RARDSPLEPGTPSFPTPGPGLWDLQTVAVWGTFLPTTLTGLGHTPEPALNPGPKGQPESL ::: : . . : : :: : : :: .:: :: . : KIAA04 MGAGDGPGAWWVAVGADGGGTLPPT--GPGHL-HPAACPGGPALPVHR 10 20 30 40 70 80 90 100 110 FLJ003 SPEVPLSSRLLSMPAWDSPANS-HRAPETQPLPPSLAEAGPPTDPLVVRNAG :.:: :. : .: .. . : : ::: : :: :::..:.: KIAA04 PPRVPG----LGSP---GPLTGLGHLPGKAPAPPS-APAG--RDPLLAREASPGGIVLAP 50 60 70 80 90 KIAA04 SPKGSAPSEHPPPLGDHSSSDGPTPAPAARGSAHPPRLPRSLPLLLWDNQGPQLPAPQVW 100 110 120 130 140 150 >>KIAA0407 ( 2143 res) hg01339 (2143 aa) initn: 72 init1: 64 opt: 126 Z-score: 93.2 bits: 26.7 E(): 5.4 Smith-Waterman score: 126; 31.132% identity (52.830% similar) in 106 aa overlap (6-104:718-813) 10 20 30 FLJ003 RARDSPLEPGTPSFPTPG---PGLWDLQTVAVWGT :.:::.:: : . :: . . .. :: KIAA04 VSPDPPARGGPSPSPPTAPKALATPAPDTLPVEPGAPSTATASDISPGA-SPSLLSPWGP 690 700 710 720 730 740 40 50 60 70 80 FLJ003 FLPTTLTGLGHTPEPALNPGPKGQP--ESLSPEVPLSSRLLSMPAWDS--PANSHRAPET . .: : .:: :.: : :: : .. ..:: . :. . . . KIAA04 W-----AGSGSIS----SPGSTGSPLHEEPSPPSPQNGPGTAVPAPTDFRPSATPEDLLA 750 760 770 780 790 90 100 110 FLJ003 QPLPPSLAEAGPPTDPLVVRNAG .:: :: . : ::.:: KIAA04 SPLSPSEVAAVPPADPGPEALHPTVPLDLPPATVPATTFPGAMGSVKPALDWLTREGGEL 800 810 820 830 840 850 >>KIAA1100 ( 444 res) hk07907 (444 aa) initn: 115 init1: 77 opt: 116 Z-score: 93.1 bits: 24.4 E(): 5.5 Smith-Waterman score: 116; 34.951% identity (47.573% similar) in 103 aa overlap (3-100:22-116) 10 20 30 40 FLJ003 RARDSPLEP-GTPSFPTPGPGLWDLQTVAVWGTFLPTTLTG : : : : : . ::: : .::. : : : KIAA11 VPAQPLHPPAPPMRPWALAVTRWPPSAPVGQRRF-SAGPGSTPGQ---LWGS--PG-LEG 10 20 30 40 50 50 60 70 80 90 FLJ003 LGHTPEPALNPG-PKGQPESLSPEVPLSSRLLSMPAWDSPANSHRAPETQPLPPSLAEA- .: :: . :. :: : :..:. : : :: :: : : . .:. .: : KIAA11 PLASP-PARDERLPSQQPPSRPPHLPVEERRASAPAGGSPRMLHPATQQSPFMVDLHEQV 60 70 80 90 100 110 100 110 FLJ003 --GPPTDPLVVRNAG :: KIAA11 HQGPVPLSYTVTTVTTQGFPLPTGQHIPGCSAQQLPACSVMFSGQHYPLCCLPPPLIQAC 120 130 140 150 160 170 >>KIAA1986 ( 334 res) pg00636 (334 aa) initn: 77 init1: 48 opt: 113 Z-score: 92.3 bits: 23.8 E(): 6.1 Smith-Waterman score: 113; 30.097% identity (46.602% similar) in 103 aa overlap (5-101:148-236) 10 20 30 FLJ003 RARDSPLEPGTPSFPTPGPGLWDLQTVAVWG--- :: ::.:: :: : ..: . KIAA19 EEEEEEEGERDETPCPALVPPTDSLGPGDRSP--PGSPSTPTE-------QRISVSSPGR 120 130 140 150 160 40 50 60 70 80 FLJ003 ---TFLPTTLTGLGHTPEPALNPGPKGQPESLSPEVPLSSRLLSMPAWDSPANSHRAPET .:. : . . . :: .: : . : :: : : : : :. .. :. KIAA19 GHKVFVVTRVESPPERAEPPASPTPPSPPPPPSP--PASPSLPPAGAIDTRDTGSSEPQP 170 180 190 200 210 220 90 100 110 FLJ003 QPLPPSLAEAGPPTDPLVVRNAG : :: ..::: KIAA19 PPEPP---RSGPPLPNGLKPEFALALPPEPPPGPEVKGGSCGLEHGERGPRAGVEGPWVL 230 240 250 260 270 280 >>FLJ00190 ( 521 res) sj02368 (521 aa) initn: 72 init1: 72 opt: 113 Z-score: 90.6 bits: 24.2 E(): 7.6 Smith-Waterman score: 113; 29.000% identity (54.000% similar) in 100 aa overlap (9-101:371-467) 10 20 30 FLJ003 RARDSPLEPGTPSFPTPGPGLWDLQTVAVWGTFLPTTL : .: :. : . :: .. :.. . .. FLJ001 FQPYIEPPSFLGQEHQAPGHSEAGGVDSGRPRAPLVPSEGSSAWD-SSDRSWASTVDSSW 350 360 370 380 390 40 50 60 70 80 90 FLJ003 T---GLGHTPE--PALNPGPKGQPESLSP-EVPLSSRLLS-MPAWDSPANSHRAPETQPL . :. : :. .:: :. ::: : : .: .: .: .. .: . : : FLJ001 DRAGSSGYLAEKGPGQGPGGDGHQESLPPPEFSKDSGFLEELP--EDNLSSWATWGTLPP 400 410 420 430 440 450 100 110 FLJ003 PPSLAEAGPPTDPLVVRNAG :.:. .::: FLJ001 EPNLVPGGPPVSLQTLTFCWESSPEEEEEARESEIEDSDAGSWGAESTQRTEDRGRTLGH 460 470 480 490 500 510 111 residues in 1 query sequences 2210883 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:41 2009 done: Fri Feb 27 10:51:42 2009 Total Scan time: 0.300 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]