# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh07374.fasta.nr -Q ../query/FLJ00318.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00318, 127 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7824674 sequences Expectation_n fit: rho(ln(x))= 5.9928+/-0.000192; mu= 2.7138+/- 0.011 mean_var=93.8932+/-17.993, 0's: 42 Z-trim: 43 B-trim: 0 in 0/66 Lambda= 0.132360 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748520|dbj|BAC03397.1| FLJ00318 protein [Homo ( 127) 881 177.0 6.7e-43 gi|119608531|gb|EAW88125.1| retinoid X receptor, a ( 249) 591 121.8 5.3e-26 gi|84579197|dbj|BAE73032.1| hypothetical protein [ ( 462) 591 122.0 8.7e-26 gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Ret ( 462) 591 122.0 8.7e-26 gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Clo ( 472) 591 122.0 8.9e-26 gi|4003528|gb|AAC95154.1| retinoic acid receptor R ( 479) 591 122.0 9e-26 gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapi ( 516) 591 122.0 9.5e-26 gi|109109847|ref|XP_001118265.1| PREDICTED: retino ( 450) 583 120.5 2.5e-25 gi|83026436|gb|ABB96254.1| retinoid X receptor, al ( 452) 583 120.5 2.5e-25 gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma ( 467) 583 120.5 2.5e-25 gi|114627460|ref|XP_520345.2| PREDICTED: hypotheti ( 601) 582 120.3 3.5e-25 gi|110781215|emb|CAL25727.1| retinoid X receptor a ( 467) 546 113.4 3.4e-23 gi|464702|sp|Q05343.1|RXRA_RAT Retinoic acid recep ( 467) 545 113.2 3.9e-23 gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Ret ( 467) 540 112.3 7.5e-23 gi|149249157|ref|XP_001477381.1| PREDICTED: simila ( 629) 540 112.3 9.5e-23 gi|148676425|gb|EDL08372.1| retinoid X receptor al ( 457) 532 110.7 2.1e-22 gi|194225999|ref|XP_001917400.1| PREDICTED: simila ( 587) 532 110.8 2.6e-22 gi|74194825|dbj|BAE26004.1| unnamed protein produc ( 467) 528 110.0 3.7e-22 gi|126297986|ref|XP_001372307.1| PREDICTED: simila ( 489) 528 110.0 3.8e-22 gi|194033746|ref|XP_001927488.1| PREDICTED: retino ( 731) 523 109.1 1e-21 gi|123228258|emb|CAM23648.1| retinoid X receptor a ( 165) 444 93.6 1.1e-17 gi|149039210|gb|EDL93430.1| retinoid X receptor al ( 439) 448 94.7 1.4e-17 gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculu ( 439) 444 93.9 2.4e-17 gi|77920905|gb|ABB05233.1| retinoid X receptor alp ( 74) 433 91.3 2.5e-17 gi|149410285|ref|XP_001506054.1| PREDICTED: simila ( 433) 405 86.5 4.1e-15 gi|1710719|sp|P51128.1|RXRA_XENLA Retinoic acid re ( 488) 371 80.0 4e-13 gi|124054090|gb|ABM89229.1| retinoid X receptor al ( 340) 291 64.6 1.2e-08 gi|189533916|ref|XP_001923873.1| PREDICTED: RXRalp ( 458) 291 64.7 1.5e-08 gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full ( 430) 266 59.9 4e-07 gi|194671811|ref|XP_887036.3| PREDICTED: retinoid ( 404) 247 56.3 4.7e-06 gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE RecName: Full= ( 452) 216 50.4 0.00031 gi|47207654|emb|CAF91378.1| unnamed protein produc ( 237) 211 49.2 0.00036 >>gi|21748520|dbj|BAC03397.1| FLJ00318 protein [Homo sap (127 aa) initn: 881 init1: 881 opt: 881 Z-score: 926.4 bits: 177.0 E(): 6.7e-43 Smith-Waterman score: 881; 100.000% identity (100.000% similar) in 127 aa overlap (1-127:1-127) 10 20 30 40 50 60 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 VISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLGQGEGVGPGVGLWLQLQDDRLILRPLGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 VISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLGQGEGVGPGVGLWLQLQDDRLILRPLGG 70 80 90 100 110 120 FLJ003 RCCGLPA ::::::: gi|217 RCCGLPA >>gi|119608531|gb|EAW88125.1| retinoid X receptor, alpha (249 aa) initn: 607 init1: 578 opt: 591 Z-score: 623.0 bits: 121.8 E(): 5.3e-26 Smith-Waterman score: 591; 85.577% identity (93.269% similar) in 104 aa overlap (4-104:10-113) 10 20 30 40 50 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 10 20 30 40 50 60 60 70 80 90 100 110 FLJ003 MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG---QGEGVGPGVGLWLQLQDD :::::::::::::::::::::::::::::::::.:. .. ..: . : .:: gi|119 MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVP 70 80 90 100 110 120 120 FLJ003 RLILRPLGGRCCGLPA gi|119 AHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLID 130 140 150 160 170 180 >>gi|84579197|dbj|BAE73032.1| hypothetical protein [Maca (462 aa) initn: 607 init1: 578 opt: 591 Z-score: 619.2 bits: 122.0 E(): 8.7e-26 Smith-Waterman score: 591; 85.577% identity (93.269% similar) in 104 aa overlap (4-104:10-113) 10 20 30 40 50 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|845 MDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 10 20 30 40 50 60 60 70 80 90 100 110 FLJ003 MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG---QGEGVGPGVGLWLQLQDD :::::::::::::::::::::::::::::::::.:. .. ..: . : .:: gi|845 MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVP 70 80 90 100 110 120 120 FLJ003 RLILRPLGGRCCGLPA gi|845 AHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLID 130 140 150 160 170 180 >>gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Retinoi (462 aa) initn: 607 init1: 578 opt: 591 Z-score: 619.2 bits: 122.0 E(): 8.7e-26 Smith-Waterman score: 591; 85.577% identity (93.269% similar) in 104 aa overlap (4-104:10-113) 10 20 30 40 50 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 MDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING 10 20 30 40 50 60 60 70 80 90 100 110 FLJ003 MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG---QGEGVGPGVGLWLQLQDD :::::::::::::::::::::::::::::::::.:. .. ..: . : .:: gi|133 MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVP 70 80 90 100 110 120 120 FLJ003 RLILRPLGGRCCGLPA gi|133 AHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLID 130 140 150 160 170 180 >>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning (472 aa) initn: 607 init1: 578 opt: 591 Z-score: 619.0 bits: 122.0 E(): 8.9e-26 Smith-Waterman score: 591; 85.577% identity (93.269% similar) in 104 aa overlap (4-104:20-123) 10 20 30 40 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSP ::::::::::::::::::::::::::::::::::::::::: gi|993 MEQKLISEEDLDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSP 10 20 30 40 50 60 50 60 70 80 90 100 FLJ003 ISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG---QGEGVGPG :::::::::::::::::::::::::::::::::::::::::::.:. .. ..: . : gi|993 ISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPP 70 80 90 100 110 120 110 120 FLJ003 VGLWLQLQDDRLILRPLGGRCCGLPA .:: gi|993 LGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYT 130 140 150 160 170 180 >>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [ (479 aa) initn: 607 init1: 578 opt: 591 Z-score: 618.9 bits: 122.0 E(): 9e-26 Smith-Waterman score: 591; 85.577% identity (93.269% similar) in 104 aa overlap (4-104:27-130) 10 20 30 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGS :::::::::::::::::::::::::::::::::: gi|400 MKNTIDNMEQKLISEEDLDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGS 10 20 30 40 50 60 40 50 60 70 80 90 FLJ003 PGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG---Q ::::::::::::::::::::::::::::::::::::::::::::::::::.:. .. . gi|400 PGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSS 70 80 90 100 110 120 100 110 120 FLJ003 GEGVGPGVGLWLQLQDDRLILRPLGGRCCGLPA .: . : .:: gi|400 SEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTV 130 140 150 160 170 180 >>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens] (516 aa) initn: 614 init1: 578 opt: 591 Z-score: 618.5 bits: 122.0 E(): 9.5e-26 Smith-Waterman score: 591; 85.577% identity (93.269% similar) in 104 aa overlap (4-104:64-167) 10 20 30 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGP :::::::::::::::::::::::::::::: gi|396 GGRRARRPLPAPPAGHELVADMDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGP 40 50 60 70 80 90 40 50 60 70 80 90 FLJ003 GIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG ::::::::::::::::::::::::::::::::::::::::::::::::::::::.:. .. gi|396 GIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMN 100 110 120 130 140 150 100 110 120 FLJ003 ---QGEGVGPGVGLWLQLQDDRLILRPLGGRCCGLPA ..: . : .:: gi|396 PVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFF 160 170 180 190 200 210 >>gi|109109847|ref|XP_001118265.1| PREDICTED: retinoid X (450 aa) initn: 606 init1: 570 opt: 583 Z-score: 611.1 bits: 120.5 E(): 2.5e-25 Smith-Waterman score: 583; 85.437% identity (93.204% similar) in 103 aa overlap (5-104:1-103) 10 20 30 40 50 60 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 FSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS 10 20 30 40 50 70 80 90 100 110 FLJ003 VISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG---QGEGVGPGVGLWLQLQDDRLILRP :::::::::::::::::::::::::::.:. .. ..: . : .:: gi|109 VISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGN 60 70 80 90 100 110 120 FLJ003 LGGRCCGLPA gi|109 MASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNR 120 130 140 150 160 170 >>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha (452 aa) initn: 599 init1: 570 opt: 583 Z-score: 611.0 bits: 120.5 E(): 2.5e-25 Smith-Waterman score: 583; 85.437% identity (93.204% similar) in 103 aa overlap (5-104:1-103) 10 20 30 40 50 60 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|830 FSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS 10 20 30 40 50 70 80 90 100 110 FLJ003 VISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG---QGEGVGPGVGLWLQLQDDRLILRP :::::::::::::::::::::::::::.:. .. ..: . : .:: gi|830 VISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGN 60 70 80 90 100 110 120 FLJ003 LGGRCCGLPA gi|830 MASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNR 120 130 140 150 160 170 >>gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma - R (467 aa) initn: 599 init1: 570 opt: 583 Z-score: 610.8 bits: 120.5 E(): 2.5e-25 Smith-Waterman score: 583; 85.437% identity (93.204% similar) in 103 aa overlap (5-104:16-118) 10 20 30 40 FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLS ::::::::::::::::::::::::::::::::::::::::::::: gi|210 MAHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLS 10 20 30 40 50 60 50 60 70 80 90 100 FLJ003 SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG---QGEGVGPGVGLWL ::::::::::::::::::::::::::::::::::::::.:. .. ..: . : .:: gi|210 SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNG 70 80 90 100 110 120 110 120 FLJ003 QLQDDRLILRPLGGRCCGLPA gi|210 VLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK 130 140 150 160 170 180 127 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 14:47:25 2009 done: Fri Feb 27 14:51:19 2009 Total Scan time: 553.660 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]