# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sh07374.fasta.nr -Q ../query/FLJ00318.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
FLJ00318, 127 aa
vs /cdna2/lib/nr/nr library
2693465022 residues in 7827732 sequences
statistics sampled from 60000 to 7824674 sequences
Expectation_n fit: rho(ln(x))= 5.9928+/-0.000192; mu= 2.7138+/- 0.011
mean_var=93.8932+/-17.993, 0's: 42 Z-trim: 43 B-trim: 0 in 0/66
Lambda= 0.132360
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7827732)
gi|21748520|dbj|BAC03397.1| FLJ00318 protein [Homo ( 127) 881 177.0 6.7e-43
gi|119608531|gb|EAW88125.1| retinoid X receptor, a ( 249) 591 121.8 5.3e-26
gi|84579197|dbj|BAE73032.1| hypothetical protein [ ( 462) 591 122.0 8.7e-26
gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Ret ( 462) 591 122.0 8.7e-26
gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Clo ( 472) 591 122.0 8.9e-26
gi|4003528|gb|AAC95154.1| retinoic acid receptor R ( 479) 591 122.0 9e-26
gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapi ( 516) 591 122.0 9.5e-26
gi|109109847|ref|XP_001118265.1| PREDICTED: retino ( 450) 583 120.5 2.5e-25
gi|83026436|gb|ABB96254.1| retinoid X receptor, al ( 452) 583 120.5 2.5e-25
gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma ( 467) 583 120.5 2.5e-25
gi|114627460|ref|XP_520345.2| PREDICTED: hypotheti ( 601) 582 120.3 3.5e-25
gi|110781215|emb|CAL25727.1| retinoid X receptor a ( 467) 546 113.4 3.4e-23
gi|464702|sp|Q05343.1|RXRA_RAT Retinoic acid recep ( 467) 545 113.2 3.9e-23
gi|133702|sp|P28700.1|RXRA_MOUSE RecName: Full=Ret ( 467) 540 112.3 7.5e-23
gi|149249157|ref|XP_001477381.1| PREDICTED: simila ( 629) 540 112.3 9.5e-23
gi|148676425|gb|EDL08372.1| retinoid X receptor al ( 457) 532 110.7 2.1e-22
gi|194225999|ref|XP_001917400.1| PREDICTED: simila ( 587) 532 110.8 2.6e-22
gi|74194825|dbj|BAE26004.1| unnamed protein produc ( 467) 528 110.0 3.7e-22
gi|126297986|ref|XP_001372307.1| PREDICTED: simila ( 489) 528 110.0 3.8e-22
gi|194033746|ref|XP_001927488.1| PREDICTED: retino ( 731) 523 109.1 1e-21
gi|123228258|emb|CAM23648.1| retinoid X receptor a ( 165) 444 93.6 1.1e-17
gi|149039210|gb|EDL93430.1| retinoid X receptor al ( 439) 448 94.7 1.4e-17
gi|1685271|gb|AAB36777.1| RXR alpha 2 [Mus musculu ( 439) 444 93.9 2.4e-17
gi|77920905|gb|ABB05233.1| retinoid X receptor alp ( 74) 433 91.3 2.5e-17
gi|149410285|ref|XP_001506054.1| PREDICTED: simila ( 433) 405 86.5 4.1e-15
gi|1710719|sp|P51128.1|RXRA_XENLA Retinoic acid re ( 488) 371 80.0 4e-13
gi|124054090|gb|ABM89229.1| retinoid X receptor al ( 340) 291 64.6 1.2e-08
gi|189533916|ref|XP_001923873.1| PREDICTED: RXRalp ( 458) 291 64.7 1.5e-08
gi|147732610|sp|A2T929.2|RXRAA_DANRE RecName: Full ( 430) 266 59.9 4e-07
gi|194671811|ref|XP_887036.3| PREDICTED: retinoid ( 404) 247 56.3 4.7e-06
gi|82200328|sp|Q6DHP9.1|RXRGB_DANRE RecName: Full= ( 452) 216 50.4 0.00031
gi|47207654|emb|CAF91378.1| unnamed protein produc ( 237) 211 49.2 0.00036
>>gi|21748520|dbj|BAC03397.1| FLJ00318 protein [Homo sap (127 aa)
initn: 881 init1: 881 opt: 881 Z-score: 926.4 bits: 177.0 E(): 6.7e-43
Smith-Waterman score: 881; 100.000% identity (100.000% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|217 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS
10 20 30 40 50 60
70 80 90 100 110 120
FLJ003 VISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLGQGEGVGPGVGLWLQLQDDRLILRPLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|217 VISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLGQGEGVGPGVGLWLQLQDDRLILRPLGG
70 80 90 100 110 120
FLJ003 RCCGLPA
:::::::
gi|217 RCCGLPA
>>gi|119608531|gb|EAW88125.1| retinoid X receptor, alpha (249 aa)
initn: 607 init1: 578 opt: 591 Z-score: 623.0 bits: 121.8 E(): 5.3e-26
Smith-Waterman score: 591; 85.577% identity (93.269% similar) in 104 aa overlap (4-104:10-113)
10 20 30 40 50
FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING
:::::::::::::::::::::::::::::::::::::::::::::::::::
gi|119 MDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING
10 20 30 40 50 60
60 70 80 90 100 110
FLJ003 MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG---QGEGVGPGVGLWLQLQDD
:::::::::::::::::::::::::::::::::.:. .. ..: . : .::
gi|119 MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVP
70 80 90 100 110 120
120
FLJ003 RLILRPLGGRCCGLPA
gi|119 AHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLID
130 140 150 160 170 180
>>gi|84579197|dbj|BAE73032.1| hypothetical protein [Maca (462 aa)
initn: 607 init1: 578 opt: 591 Z-score: 619.2 bits: 122.0 E(): 8.7e-26
Smith-Waterman score: 591; 85.577% identity (93.269% similar) in 104 aa overlap (4-104:10-113)
10 20 30 40 50
FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING
:::::::::::::::::::::::::::::::::::::::::::::::::::
gi|845 MDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING
10 20 30 40 50 60
60 70 80 90 100 110
FLJ003 MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG---QGEGVGPGVGLWLQLQDD
:::::::::::::::::::::::::::::::::.:. .. ..: . : .::
gi|845 MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVP
70 80 90 100 110 120
120
FLJ003 RLILRPLGGRCCGLPA
gi|845 AHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLID
130 140 150 160 170 180
>>gi|133701|sp|P19793.1|RXRA_HUMAN RecName: Full=Retinoi (462 aa)
initn: 607 init1: 578 opt: 591 Z-score: 619.2 bits: 122.0 E(): 8.7e-26
Smith-Waterman score: 591; 85.577% identity (93.269% similar) in 104 aa overlap (4-104:10-113)
10 20 30 40 50
FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING
:::::::::::::::::::::::::::::::::::::::::::::::::::
gi|133 MDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPING
10 20 30 40 50 60
60 70 80 90 100 110
FLJ003 MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG---QGEGVGPGVGLWLQLQDD
:::::::::::::::::::::::::::::::::.:. .. ..: . : .::
gi|133 MGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVP
70 80 90 100 110 120
120
FLJ003 RLILRPLGGRCCGLPA
gi|133 AHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLID
130 140 150 160 170 180
>>gi|9931482|gb|AAG02188.1| retinoid-X-receptor [Cloning (472 aa)
initn: 607 init1: 578 opt: 591 Z-score: 619.0 bits: 122.0 E(): 8.9e-26
Smith-Waterman score: 591; 85.577% identity (93.269% similar) in 104 aa overlap (4-104:20-123)
10 20 30 40
FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSP
:::::::::::::::::::::::::::::::::::::::::
gi|993 MEQKLISEEDLDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSP
10 20 30 40 50 60
50 60 70 80 90 100
FLJ003 ISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG---QGEGVGPG
:::::::::::::::::::::::::::::::::::::::::::.:. .. ..: . :
gi|993 ISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPP
70 80 90 100 110 120
110 120
FLJ003 VGLWLQLQDDRLILRPLGGRCCGLPA
.::
gi|993 LGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYT
130 140 150 160 170 180
>>gi|4003528|gb|AAC95154.1| retinoic acid receptor RXR [ (479 aa)
initn: 607 init1: 578 opt: 591 Z-score: 618.9 bits: 122.0 E(): 9e-26
Smith-Waterman score: 591; 85.577% identity (93.269% similar) in 104 aa overlap (4-104:27-130)
10 20 30
FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGS
::::::::::::::::::::::::::::::::::
gi|400 MKNTIDNMEQKLISEEDLDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGS
10 20 30 40 50 60
40 50 60 70 80 90
FLJ003 PGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG---Q
::::::::::::::::::::::::::::::::::::::::::::::::::.:. .. .
gi|400 PGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSS
70 80 90 100 110 120
100 110 120
FLJ003 GEGVGPGVGLWLQLQDDRLILRPLGGRCCGLPA
.: . : .::
gi|400 SEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTV
130 140 150 160 170 180
>>gi|39645799|gb|AAH63827.1| RXRA protein [Homo sapiens] (516 aa)
initn: 614 init1: 578 opt: 591 Z-score: 618.5 bits: 122.0 E(): 9.5e-26
Smith-Waterman score: 591; 85.577% identity (93.269% similar) in 104 aa overlap (4-104:64-167)
10 20 30
FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGP
::::::::::::::::::::::::::::::
gi|396 GGRRARRPLPAPPAGHELVADMDTKHFLPLDFSTQVNSSLTSPTGRGSMAAPSLHPSLGP
40 50 60 70 80 90
40 50 60 70 80 90
FLJ003 GIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::.:. ..
gi|396 GIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMN
100 110 120 130 140 150
100 110 120
FLJ003 ---QGEGVGPGVGLWLQLQDDRLILRPLGGRCCGLPA
..: . : .::
gi|396 PVSSSEDIKPPLGLNGVLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFF
160 170 180 190 200 210
>>gi|109109847|ref|XP_001118265.1| PREDICTED: retinoid X (450 aa)
initn: 606 init1: 570 opt: 583 Z-score: 611.1 bits: 120.5 E(): 2.5e-25
Smith-Waterman score: 583; 85.437% identity (93.204% similar) in 103 aa overlap (5-104:1-103)
10 20 30 40 50 60
FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|109 FSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS
10 20 30 40 50
70 80 90 100 110
FLJ003 VISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG---QGEGVGPGVGLWLQLQDDRLILRP
:::::::::::::::::::::::::::.:. .. ..: . : .::
gi|109 VISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGN
60 70 80 90 100 110
120
FLJ003 LGGRCCGLPA
gi|109 MASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNR
120 130 140 150 160 170
>>gi|83026436|gb|ABB96254.1| retinoid X receptor, alpha (452 aa)
initn: 599 init1: 570 opt: 583 Z-score: 611.0 bits: 120.5 E(): 2.5e-25
Smith-Waterman score: 583; 85.437% identity (93.204% similar) in 103 aa overlap (5-104:1-103)
10 20 30 40 50 60
FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|830 FSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFS
10 20 30 40 50
70 80 90 100 110
FLJ003 VISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG---QGEGVGPGVGLWLQLQDDRLILRP
:::::::::::::::::::::::::::.:. .. ..: . : .::
gi|830 VISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNGVLKVPAHPSGN
60 70 80 90 100 110
120
FLJ003 LGGRCCGLPA
gi|830 MASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNR
120 130 140 150 160 170
>>gi|210060988|pdb|3DZU|A Chain A, Intact Ppar Gamma - R (467 aa)
initn: 599 init1: 570 opt: 583 Z-score: 610.8 bits: 120.5 E(): 2.5e-25
Smith-Waterman score: 583; 85.437% identity (93.204% similar) in 103 aa overlap (5-104:16-118)
10 20 30 40
FLJ003 REGDFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLS
:::::::::::::::::::::::::::::::::::::::::::::
gi|210 MAHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLS
10 20 30 40 50 60
50 60 70 80 90 100
FLJ003 SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQVSAGLG---QGEGVGPGVGLWL
::::::::::::::::::::::::::::::::::::::.:. .. ..: . : .::
gi|210 SPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNG
70 80 90 100 110 120
110 120
FLJ003 QLQDDRLILRPLGGRCCGLPA
gi|210 VLKVPAHPSGNMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK
130 140 150 160 170 180
127 residues in 1 query sequences
2693465022 residues in 7827732 library sequences
Tcomplib [34.26] (2 proc)
start: Fri Feb 27 14:47:25 2009 done: Fri Feb 27 14:51:19 2009
Total Scan time: 553.660 Total Display time: 0.020
Function used was FASTA [version 34.26.5 April 26, 2007]