# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj00104.fasta.huge -Q ../query/FLJ00171.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00171, 396 aa vs ./tmplib.10216 library 2210598 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.5861+/-0.00397; mu= 21.4194+/- 0.270 mean_var=83.7979+/-18.326, 0's: 0 Z-trim: 1 B-trim: 108 in 1/39 Lambda= 0.140106 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1423 ( 616 res) fh08369(revised) ( 616) 108 31.6 0.19 KIAA1918 ( 516 res) hj01313 ( 516) 92 28.2 1.6 FLJ00385 ( 509 res) sj03289 ( 509) 91 28.0 1.8 KIAA0442 ( 1266 res) hh03913 (1266) 90 28.5 3.4 FLJ00214 ( 322 res) sj05155 ( 322) 83 26.1 4.5 KIAA1893 ( 800 res) fk04261 ( 800) 83 26.7 7.1 KIAA0233 ( 2035 res) ha04602 (2035) 86 28.0 7.5 FLJ00417 ( 600 res) sj06336 ( 600) 80 25.9 9.4 KIAA1868 ( 463 res) fj22550 ( 463) 79 25.5 9.4 KIAA1209 ( 1113 res) fg05970 (1113) 82 26.7 9.6 KIAA1781 ( 974 res) fg06971(revised) ( 974) 81 26.4 10 KIAA0572 ( 1872 res) hh02391 (1872) 83 27.3 11 FLJ00164 ( 822 res) sh07138 ( 822) 79 25.9 13 KIAA1894 ( 2977 res) ff08107 (2977) 83 27.7 14 KIAA1815 ( 881 res) ha00534 ( 881) 78 25.8 15 KIAA1702 ( 530 res) fj15966 ( 530) 76 25.0 15 KIAA1447 ( 1721 res) fh04686 (1721) 80 26.7 16 KIAA1003 ( 917 res) hk09911 ( 917) 77 25.6 18 KIAA1528 ( 740 res) hh03104(revised) ( 740) 76 25.2 18 KIAA0782 ( 1281 res) hk05405s1 (1281) 77 25.8 21 KIAA1298 ( 738 res) fg04206 ( 738) 75 25.0 21 KIAA0457 ( 845 res) hg00693 ( 845) 75 25.1 22 KIAA0123 ( 528 res) ha01523s1 ( 528) 72 24.2 27 KIAA0819 ( 989 res) hh01037 ( 989) 74 25.0 28 KIAA1907 ( 1737 res) ah00504 (1737) 76 25.8 28 FLJ00362 ( 638 res) sh04538 ( 638) 72 24.3 29 KIAA1740 ( 1119 res) pj00674 (1119) 74 25.1 29 FLJ00256 ( 856 res) sj09675 ( 856) 73 24.7 30 FLJ00222 ( 656 res) sj06165 ( 656) 72 24.3 30 KIAA1784 ( 1167 res) fh08226 (1167) 74 25.2 30 KIAA0140 ( 439 res) ha00520 ( 439) 70 23.6 32 KIAA0397 ( 1016 res) fj00010 (1016) 73 24.9 32 KIAA1352 ( 1212 res) fj01313 (1212) 73 25.0 35 KIAA0475 ( 438 res) hh00451 ( 438) 69 23.4 37 KIAA1891 ( 780 res) fk02783 ( 780) 71 24.3 37 FLJ00332 ( 201 res) sj03652 ( 201) 66 22.3 38 KIAA0386 ( 1085 res) hj00015 (1085) 72 24.7 38 FLJ00414 ( 1129 res) sg00016 (1129) 72 24.7 39 KIAA1813 ( 673 res) ph00819b ( 673) 70 24.0 40 KIAA0450 ( 1182 res) hj05822 (1182) 72 24.8 40 KIAA1056 ( 870 res) hh11792 ( 870) 70 24.1 45 KIAA0410 ( 505 res) hg01877 ( 505) 68 23.3 46 KIAA0954 ( 1183 res) hj05543s1 (1183) 71 24.6 46 KIAA0228 ( 681 res) ha04738 ( 681) 69 23.8 46 FLJ00091 ( 170 res) as00091 ( 170) 64 21.8 46 KIAA1656 ( 136 res) fg00806 ( 136) 63 21.4 48 KIAA0271 ( 202 res) ha06752 ( 202) 64 21.9 50 KIAA1762 ( 1460 res) fh27937(revised) (1460) 71 24.7 51 KIAA1666 ( 1003 res) fg02554 (1003) 69 24.0 56 FLJ00250 ( 332 res) sj08804 ( 332) 65 22.4 56 >>KIAA1423 ( 616 res) fh08369(revised) (616 aa) initn: 96 init1: 57 opt: 108 Z-score: 119.4 bits: 31.6 E(): 0.19 Smith-Waterman score: 108; 24.265% identity (52.941% similar) in 136 aa overlap (25-154:312-444) 10 20 30 40 50 FLJ001 RRLSLRYRSGKMRSSLAPGVWFFRAFSR-DSWFRGLILLLTFLIYACYHMSRKP :::: . ::: ....:::.. . : . KIAA14 NYTQYTVIVGFEHLKLPIKGMNFTWKTYNPAFSRLEIWFRFFFVVLTFIVTCLFAHSLRK 290 300 310 320 330 340 60 70 80 90 100 FLJ001 ISIVKSRLHQNCSEQIKPI----NDTHSLNDTMWCSWAPFDKDN-YKELLGGVDNAFLIA .:. ..:. . :. :: . . :: : :. .. .. . : . KIAA14 FSMRDWGIEQKWMSVLLPLLLLYNDPFFPLSFLVNSWLPGMLDDLFQSMFLCALLLFWLC 350 360 370 380 390 400 110 120 130 140 150 160 FLJ001 YAIGMFISGVFGERLPLRYYLSAGMLLSGLFTSLFGLGYFWNIHELWYFVVIQVCNGLVQ :. ..: :: : .:: .... :. . :: . ...:: KIAA14 VYHGIRVQG---ERKCLTFYLPKFFIVGLLWLASVTLGIWQTVNELHDPMYQYRVDTGNF 410 420 430 440 450 170 180 190 200 210 220 FLJ001 TTGWPSVVTCVGNWFGKGKRGFIMGIWNSHTSVGNILGSLIAGIWVNGQWGLSFIVPGII KIAA14 QGMKVFFMVVAAVYILYLLFLIVRACSELRHMPYVDLRLKFLTALTFVVLVISIAILYLR 460 470 480 490 500 510 >>KIAA1918 ( 516 res) hj01313 (516 aa) initn: 51 init1: 51 opt: 92 Z-score: 102.6 bits: 28.2 E(): 1.6 Smith-Waterman score: 92; 24.265% identity (51.471% similar) in 136 aa overlap (120-251:239-369) 90 100 110 120 130 140 FLJ001 DKDNYKELLGGVDNAFLIAYAIGMFISGVFGER-LPLRYYLSAGMLLSGLFTSLFGLGYF :.: ::.: :: :.: . . .: . KIAA19 AGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRNYFEEIGTY 210 220 230 240 250 260 150 160 170 180 190 200 FLJ001 WNIHELWYFVVIQVCNGLVQTTGWPSVVTC--VGNWFGKGKRGFIMGIWNSHTSVGNILG ..: ... . : : .::: ::. : :. . : ..: : : . KIAA19 DAGMDIWGGENLEMSFRIWQCGGSLEIVTCSHVGHVFRKATPYTFPG-GTGH--VINKNN 270 280 290 300 310 320 210 220 230 240 250 260 FLJ001 SLIAGIWVNGQWGLSFIV-PGIITAVMGVITFLFLIEHPEDVDCAPPQHHGEPAENQDNP .: .:.. . .:. ::.. . .: .. .. :.. : : KIAA19 RRLAEVWMDEFKDFFYIISPGVVKVDYGDVSVRKTLR--ENLKCKPFSWYLENIYPDSQI 330 340 350 360 370 380 270 280 290 300 310 320 FLJ001 EDPGNSPCSIRESGLETVAKCSKGPCEEPAAISFFGALRIPGVVEFSLCLLFAKLVSYTF KIAA19 PRRYYSLGEIRNVETNQCLDNMGRKENEKVGIFNCHGMGGNQVFSYTADKEIRTDDLCLD 390 400 410 420 430 440 >>FLJ00385 ( 509 res) sj03289 (509 aa) initn: 45 init1: 45 opt: 91 Z-score: 101.6 bits: 28.0 E(): 1.8 Smith-Waterman score: 93; 30.693% identity (43.564% similar) in 101 aa overlap (249-338:51-150) 220 230 240 250 260 270 FLJ001 GLSFIVPGIITAVMGVITFLFLIEHPEDVDCAPPQHHGEP--AENQDNPEDPGNSPCSIR : :: :: : . .: .::: FLJ003 PNAREPRHWTLPGPSWIDKNQGASAPWAQLCPTPQSHGAISLAASTKGPSVFPLAPCSRS 30 40 50 60 70 80 280 290 300 310 320 330 FLJ001 ESGLETVAKC-SKGPCEEPAAISF-FGALRIPGVVEFSLCLLFAKLVSYTFLYWLP---- :: .. : : ::...:. ::: :: : : . : : . . .: FLJ003 TSGGTAALGCLVKDYFPEPVTVSWNSGALT-SGVHTFPAVLQSSGLYSLSSVVTVPSSSL 90 100 110 120 130 340 350 360 370 380 FLJ001 ---LYIANVAHFSAKEAGDLSTLFDVGGIIDVPVQLHWPGRDCQLHSDADHLWGPGQWPI : :: : FLJ003 GTQTYTCNVNHKPSNTKVDKRVELKTPLGDTTHTCPRCPEPKSCDTPPPCPRCPEPKSCD 140 150 160 170 180 190 >>KIAA0442 ( 1266 res) hh03913 (1266 aa) initn: 54 init1: 54 opt: 90 Z-score: 96.9 bits: 28.5 E(): 3.4 Smith-Waterman score: 90; 32.000% identity (53.333% similar) in 75 aa overlap (243-312:726-794) 220 230 240 250 260 FLJ001 WVNGQWGLSFIVPGIITAVMGVITFLFLIEHPEDVDCAPPQHHGEPAENQDNPE---DPG :: . .:: ::. : :: .: KIAA04 RPPGPSLFGAIHHPHDLARPSTLFSAAGAAHPTGTPFGPPPHHS----NFLNPAAHLEPF 700 710 720 730 740 750 270 280 290 300 310 320 FLJ001 NSPCSIRESGLETVAKCSKGPCEEPAAI--SFFGALRIPGVVEFSLCLLFAKLVSYTFLY : : .. .:: .:. . : .:.. :.:: :.: .:: KIAA04 NRPSTF--TGLAAVGGNAFGGLGNPSVTPNSMFGHKDGPSVQNFSNPHEPWNRLHRTPPS 760 770 780 790 800 330 340 350 360 370 380 FLJ001 WLPLYIANVAHFSAKEAGDLSTLFDVGGIIDVPVQLHWPGRDCQLHSDADHLWGPGQWPI KIAA04 FPTPPPWLKPGELERSASAAAHDRDRDVDKRDSSVSKDDKERESVEKRHSSHPSPAPVLP 810 820 830 840 850 860 >>FLJ00214 ( 322 res) sj05155 (322 aa) initn: 71 init1: 71 opt: 83 Z-score: 94.6 bits: 26.1 E(): 4.5 Smith-Waterman score: 83; 32.692% identity (63.462% similar) in 52 aa overlap (252-301:162-207) 230 240 250 260 270 280 FLJ001 FIVPGIITAVMGVITFLFLIEHPEDVDCAPPQHHGEPAENQDNPEDPGNSPCSIRESGLE ::. : :.:.:..:: : :.:.:. FLJ002 ECPQAPDSDPQEAESPLQAAAMDPQASDWSPQESGSPVETQESPEKAG------RRSSLQ 140 150 160 170 180 290 300 310 320 330 FLJ001 TVAKCS--KGPCEEPAAISFFGALRIPGVVEFSLCLLFAKLVSYTFLYWLPLYIANVAHF . :. . .:: . : ...: FLJ002 SPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEARGLRQEGPEHKPGPSEPSSVQ 190 200 210 220 230 240 >>KIAA1893 ( 800 res) fk04261 (800 aa) initn: 48 init1: 48 opt: 83 Z-score: 91.1 bits: 26.7 E(): 7.1 Smith-Waterman score: 83; 31.579% identity (49.123% similar) in 57 aa overlap (248-298:46-102) 220 230 240 250 260 270 FLJ001 WGLSFIVPGIITAVMGVITFLFLIEHPEDVDCAPPQHHGEPAENQDNPED-PGNSPCSIR : : :... :: . .:.. :: KIAA18 QKDSSPPGPRPTAFFCPQDGSLGAGSSAMRDYCPSQQKASPAPPRHTPDQSPGMESRHRS 20 30 40 50 60 70 280 290 300 310 320 330 FLJ001 ESGLETVAKCSKGP-----CEEPAAISFFGALRIPGVVEFSLCLLFAKLVSYTFLYWLPL :: :.:: :: : :. .: KIAA18 PSGAGEGASCSDGPRGSLACPSPTCFSPQESPSKETLEAHGASISGTPEATTSGKPEPVS 80 90 100 110 120 130 >>KIAA0233 ( 2035 res) ha04602 (2035 aa) initn: 112 init1: 57 opt: 86 Z-score: 90.7 bits: 28.0 E(): 7.5 Smith-Waterman score: 95; 30.303% identity (54.545% similar) in 99 aa overlap (308-392:148-243) 280 290 300 310 320 330 FLJ001 SGLETVAKCSKGPCEEPAAISFFGALRIPGVVEFSLCLLFAKLVSYTFLYW-LPLYIANV :: ... .:.: ::: . .: : :. KIAA02 VYMFLFLLCLTLFQVYYSLWRKLLKAFWWLVVAYTMLVLIA---VYTFQFQDFPAYWRNL 120 130 140 150 160 170 340 350 360 370 380 FLJ001 AHFSAKEAGDL-------STLFD---VGG--IIDVPVQLHWPGRDCQLHSDADHLWGPG- . :. .. ::: : ::. : : .. .:::. : . .: .:. :: KIAA02 TGFTDEQLGDLGLEQFSVSELFSSILVPGFFLLACILQLHYFHRPFMQLTDMEHVSLPGT 180 190 200 210 220 230 390 FLJ001 QWPIRAHHHCCLC . : ::.. KIAA02 RLPRWAHRQDAVSGTPLLREEQQEHQQQQQEEEEEEDSRDEGLGVATPHQATQVPEGAAK 240 250 260 270 280 290 >>FLJ00417 ( 600 res) sj06336 (600 aa) initn: 113 init1: 59 opt: 80 Z-score: 88.9 bits: 25.9 E(): 9.4 Smith-Waterman score: 80; 26.667% identity (53.333% similar) in 75 aa overlap (249-319:456-528) 220 230 240 250 260 270 FLJ001 GLSFIVPGIITAVMGVITFLFLIEHPEDVDCAPPQHHGEPAENQDNPEDPG---NSPCSI : . :: :..... :. :: ..: . FLJ004 RERPPSPGPASRQAAIRQQPRARADSLGAPCCGLDPHGIPGRSREAPKGPGAWRQGPGGS 430 440 450 460 470 480 280 290 300 310 320 330 FLJ001 RESGLETVAKCSKG-PCEEPAAISFFGALRIPGVVEFSLCLLFAKLVSYTFLYWLPLYIA . .. . : : : . : :: : ::... . :::. FLJ004 GSMSSDSSSPDSPGIPERSPRWPE--GACRQPGALQGEMSALFAQKLEEIRSKSPMFSAG 490 500 510 520 530 540 340 350 360 370 380 390 FLJ001 NVAHFSAKEAGDLSTLFDVGGIIDVPVQLHWPGRDCQLHSDADHLWGPGQWPIRAHHHCC FLJ004 KPLLPCVVLPHAPGMAGPGSPAAASAWTVSPRVLVLVALYPWHCLRGTLLPWLACGP 550 560 570 580 590 600 >>KIAA1868 ( 463 res) fj22550 (463 aa) initn: 62 init1: 62 opt: 79 Z-score: 88.9 bits: 25.5 E(): 9.4 Smith-Waterman score: 79; 32.500% identity (57.500% similar) in 40 aa overlap (252-291:376-413) 230 240 250 260 270 280 FLJ001 FIVPGIITAVMGVITFLFLIEHPEDVDCAPPQHHGEPAENQDNPEDPGNSPCSIRESGLE : : : . .. :.::::. . :: . KIAA18 STPESCVSSSSAIIAKPGEWLPRGRQEEPRPAPTGTPRQPREAPQDPGNG-VTTRECASA 350 360 370 380 390 400 290 300 310 320 330 340 FLJ001 TVAKCSKGPCEEPAAISFFGALRIPGVVEFSLCLLFAKLVSYTFLYWLPLYIANVAHFSA . : ..:: KIAA18 FTCK-PRAPCTPEMLDWNPPKAKASVLAPLFSSCGPQQASRPGSTASSTRGLPSSQSHRK 410 420 430 440 450 460 >>KIAA1209 ( 1113 res) fg05970 (1113 aa) initn: 52 init1: 52 opt: 82 Z-score: 88.7 bits: 26.7 E(): 9.6 Smith-Waterman score: 82; 31.915% identity (61.702% similar) in 47 aa overlap (51-97:1056-1100) 30 40 50 60 70 80 FLJ001 WFFRAFSRDSWFRGLILLLTFLIYACYHMSRKPISIVKSRLHQNCSEQIKPINDTHSLND : : . :.:.: . : . : ::. .::: KIAA12 RRRKSDSKFVDADFSDNVCSGNTLHSLNSPRTPKKPVNSKL--GLSPYLTPYNDSDKLND 1030 1040 1050 1060 1070 1080 90 100 110 120 130 140 FLJ001 TMWCSWAPFDKDNYKELLGGVDNAFLIAYAIGMFISGVFGERLPLRYYLSAGMLLSGLFT .: . .: ... . : KIAA12 YLWRGPSPNQQNIVQSLREKFQCLSSSSFA 1090 1100 1110 396 residues in 1 query sequences 2210598 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:43:24 2009 done: Fri Feb 27 10:43:25 2009 Total Scan time: 0.500 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]