# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj01102.fasta.huge -Q ../query/FLJ00178.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00178, 249 aa vs ./tmplib.10216 library 2210745 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.3116+/-0.00462; mu= 17.9941+/- 0.312 mean_var=120.8731+/-25.636, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.116657 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00022 ( 344 res) as00022 ( 344) 103 27.3 1.3 KIAA1991 ( 712 res) bf00209 ( 712) 99 27.1 3 KIAA1118 ( 1165 res) hk07196(revised) (1165) 98 27.3 4.3 KIAA1384 ( 652 res) fj06146 ( 652) 91 25.7 7.2 KIAA0672 ( 824 res) hk02382 ( 824) 92 26.1 7.2 KIAA1963 ( 488 res) ph00179 ( 488) 89 25.2 7.8 KIAA1813 ( 673 res) ph00819b ( 673) 90 25.6 8.2 FLJ00328 ( 238 res) sj02853 ( 238) 83 23.7 11 KIAA0380 ( 1539 res) hh00518 (1539) 90 26.2 12 KIAA0731 ( 1096 res) hk03714 (1096) 88 25.6 13 KIAA2036 ( 1322 res) pf06513 (1322) 88 25.7 15 KIAA1983 ( 418 res) fk09737(revised) ( 418) 83 24.1 15 FLJ00201 ( 705 res) sj04110 ( 705) 85 24.8 15 FLJ00224 ( 896 res) sj06244 ( 896) 85 24.9 17 KIAA0556 ( 1625 res) hg03732 (1625) 87 25.7 18 FLJ00072 ( 204 res) as00072 ( 204) 77 22.5 21 KIAA1743 ( 1036 res) pj01380s1 (1036) 84 24.9 21 KIAA0376 ( 885 res) hh00388 ( 885) 83 24.6 21 KIAA1399 ( 452 res) hk07377 ( 452) 80 23.6 22 KIAA1883 ( 1480 res) fh02249 (1480) 85 25.3 22 KIAA1124 ( 1760 res) fg05708 (1760) 85 25.4 24 FLJ00280 ( 440 res) sh01728 ( 440) 79 23.4 24 FLJ00018 ( 1430 res) as00018 (1430) 84 25.1 24 FLJ00315 ( 925 res) sh06842 ( 925) 82 24.5 24 KIAA0584 ( 738 res) hj00933 ( 738) 81 24.1 25 KIAA1781 ( 974 res) fg06971(revised) ( 974) 82 24.5 25 KIAA0557 ( 493 res) hh01334 ( 493) 79 23.5 25 KIAA0360 ( 1019 res) hh00062s1 (1019) 82 24.5 26 FLJ00319 ( 456 res) sh07415 ( 456) 78 23.3 27 FLJ00258 ( 792 res) sj09927 ( 792) 80 24.0 28 KIAA0369 ( 794 res) hh00177 ( 794) 80 24.0 28 KIAA1100 ( 444 res) hk07907 ( 444) 77 23.1 30 KIAA0612 ( 1810 res) hg00654s1 (1810) 83 25.1 30 KIAA1063 ( 593 res) hj04848 ( 593) 78 23.5 31 FLJ00079 ( 84 res) as00079 ( 84) 69 20.6 33 FLJ00046 ( 169 res) as00046 ( 169) 72 21.6 33 KIAA1768 ( 1207 res) ph00672(revised) (1207) 80 24.3 35 KIAA0333 ( 1223 res) pf04993 (1223) 80 24.3 35 KIAA0667 ( 1111 res) hk02319 (1111) 79 24.1 38 FLJ00237 ( 351 res) sj07406 ( 351) 74 22.4 38 KIAA1471 ( 1421 res) fj02383s1 (1421) 80 24.4 38 KIAA1818 ( 1157 res) hg00622 (1157) 79 24.1 39 KIAA1386 ( 1214 res) fj06274 (1214) 79 24.2 40 KIAA0331 ( 814 res) hg00928 ( 814) 77 23.5 41 KIAA0346 ( 1682 res) hg01508s1 (1682) 80 24.6 41 FLJ00015 ( 307 res) as00015 ( 307) 72 22.0 45 KIAA0574 ( 405 res) hj00204 ( 405) 73 22.4 46 KIAA0167 ( 844 res) ha01026 ( 844) 76 23.4 47 KIAA1644 ( 132 res) fg07060 ( 132) 68 20.7 47 FLJ00134 ( 341 res) sh02437 ( 341) 72 22.1 47 >>FLJ00022 ( 344 res) as00022 (344 aa) initn: 99 init1: 67 opt: 103 Z-score: 104.4 bits: 27.3 E(): 1.3 Smith-Waterman score: 103; 36.842% identity (52.632% similar) in 57 aa overlap (6-57:9-61) 10 20 30 40 50 FLJ001 HVDLGGAARVGQPGLGGSPGTQ-----LCPRRLSTPSPMQPPPDEARRDMAGDTQWS :. :.: :: : : ... .: :: : : :::: .: : : . FLJ000 GSRSSCGAGSCRLG-PGPGPSRAARAMRSCFCVRRSRDPPPPQPPPPPPQR---GTDQST 10 20 30 40 50 60 70 80 90 100 110 FLJ001 RPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDFGWNKKEAGIVLSSFFWGYCLTQVV :: . FLJ000 MPEVKDLSEALPETSMDPITGVGVVASRNRAPTGYDVVAQTADGVDADLWKDGLFKSKVT 60 70 80 90 100 110 >>KIAA1991 ( 712 res) bf00209 (712 aa) initn: 96 init1: 55 opt: 99 Z-score: 97.9 bits: 27.1 E(): 3 Smith-Waterman score: 99; 25.806% identity (46.237% similar) in 93 aa overlap (3-95:33-122) 10 20 30 FLJ001 HVDLGGAARVGQPGLGGSPGTQLCPRRLSTPS : .::..: :: ...:. . : : KIAA19 NKMAAAGPSTRASSAAAAAALSRRGRRGRCDETAAAKTGAPGPASGPSLLVLSPPLLQP- 10 20 30 40 50 60 40 50 60 70 80 90 FLJ001 PMQPPPDEARRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDFGWNK :. : :.:. :: . : : : : .. : : .. :: . KIAA19 PLPPRPEES--GCAGCLEPPGEAAALPCGHSLCRGCAQRAADAAGPGCPRCRARGPGWAR 70 80 90 100 110 100 110 120 130 140 150 FLJ001 KEAGIVLSSFFWGYCLTQVVGGHLGDRIGGEKVILLSASAWGSITAVTPLLAHLSSAHLA ..: KIAA19 RRARDDGQADSEVLGECARRSQPERCRPRRDGGAAAAGPRPEQEPRAAPAEPDFIFRAPI 120 130 140 150 160 170 >>KIAA1118 ( 1165 res) hk07196(revised) (1165 aa) initn: 103 init1: 79 opt: 98 Z-score: 95.1 bits: 27.3 E(): 4.3 Smith-Waterman score: 98; 40.476% identity (59.524% similar) in 42 aa overlap (11-48:482-521) 10 20 30 40 FLJ001 HVDLGGAARVGQPGLGGSPGTQLCPRRLSTPSPMQPPPDE : :. : :: . : :.: :.::: :. KIAA11 VPGMRQPAQELSPTPGGTAHQALKANNAGGGLPAAG--PGDRCLPTSDSSPEPQQPPEDR 460 470 480 490 500 50 60 70 80 90 FLJ001 AR----RDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDFGWNKKEAG .. .: ::: KIAA11 TQDVLAQDAAGDNLEMMAPSRGSAKSRGPLEELLHTLQLLEKEPDALPRPRTHHRGRYAW 510 520 530 540 550 560 >>KIAA1384 ( 652 res) fj06146 (652 aa) initn: 168 init1: 67 opt: 91 Z-score: 91.0 bits: 25.7 E(): 7.2 Smith-Waterman score: 91; 42.500% identity (62.500% similar) in 40 aa overlap (1-40:89-126) 10 20 30 FLJ001 HVDLGGAARVGQPGLGGSPGTQLCPRRLST : :::.. :: ::: .: : : . . KIAA13 VTLTAQGQQFHCHKAVLASCSQYFRSLFSSHPPLGGGVG-GQDGLG-APKDQQQPPQQQP 60 70 80 90 100 110 40 50 60 70 80 90 FLJ001 PSPMQPPPDEARRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDFGW . .::::.: KIAA13 SQQQQPPPQEEPGTPSSSPDDKLLTSPRAINNLVLQGCSSIGLRLVLEYLYTANVTLSLD 120 130 140 150 160 170 >>KIAA0672 ( 824 res) hk02382 (824 aa) initn: 104 init1: 74 opt: 92 Z-score: 91.0 bits: 26.1 E(): 7.2 Smith-Waterman score: 92; 37.209% identity (60.465% similar) in 43 aa overlap (6-41:604-646) 10 20 FLJ001 HVDLGGAARVGQPG-------LGGSPGTQLCPRRL :.:. :.:: : .::.: . KIAA06 PAAPALSPSGLGLQPGPERTSTTKSKELSPGSAQKGSPGSSQGTACAGTQPGAQPGAQPG 580 590 600 610 620 630 30 40 50 60 70 80 FLJ001 STPSPMQPPPDEARRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDF ..::: ::: :.. KIAA06 ASPSPSQPPADQSPHTLRKVSKKLAPIPPKVPFGQPGAMADQSAGQLSPVSLSPTPPSTP 640 650 660 670 680 690 >>KIAA1963 ( 488 res) ph00179 (488 aa) initn: 61 init1: 61 opt: 89 Z-score: 90.3 bits: 25.2 E(): 7.8 Smith-Waterman score: 89; 36.957% identity (50.000% similar) in 46 aa overlap (13-57:83-128) 10 20 30 40 FLJ001 HVDLGGAARVGQPGLGGSPGTQLC-PRRLSTPSPMQPPPDEA ::.:::: : : : : : :: . KIAA19 RGGDQRLSRTRHNSGTGGARLDRVPLPASSPGVGGSPCPPACTPCRSSLREPAAPPRPGS 60 70 80 90 100 110 50 60 70 80 90 100 FLJ001 RRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDFGWNKKEAGIVLSS . . . : ::. : KIAA19 EPRGSRSLQRPRPHGQRTHHHSLSAGAAAVQAAHWGPSARPSLGCPRGQGACTMKSALFT 120 130 140 150 160 170 >>KIAA1813 ( 673 res) ph00819b (673 aa) initn: 111 init1: 57 opt: 90 Z-score: 90.0 bits: 25.6 E(): 8.2 Smith-Waterman score: 90; 45.000% identity (57.500% similar) in 40 aa overlap (4-41:289-327) 10 20 30 FLJ001 HVDLGGAARVGQPGLG--GSPGTQLCPRRLSTP ::: . : : : .:: .. : .: : : KIAA18 GALPGPARGVPTGPSHSDSGRSSSSKSTGSLGGRVAGGLLGSGTRASPDSSSCGER-SPP 260 270 280 290 300 310 40 50 60 70 80 90 FLJ001 SPMQPPPDEARRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDFGWN : :: ::: KIAA18 PPPPPPSDEALLHCVLEGKLRDREAELQQLRDSLDENEATMCQAYEERQRHWQREREALR 320 330 340 350 360 370 >>FLJ00328 ( 238 res) sj02853 (238 aa) initn: 70 init1: 70 opt: 83 Z-score: 87.7 bits: 23.7 E(): 11 Smith-Waterman score: 83; 29.167% identity (51.389% similar) in 72 aa overlap (11-72:163-232) 10 20 30 FLJ001 HVDLGGAARVGQPG----LGGSPGTQLCPRRLSTPSPMQP : :: : ::. :: ..:. ..: FLJ003 LFSAHAGVAADIRPLGVPAPPGAPPCSYLRGPPGGASLQGCSPAQTAAARRGASPAKLHP 140 150 160 170 180 190 40 50 60 70 80 90 FLJ001 PPDE------ARRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDFGW ::.. :: . .:... :. : :: . . : : FLJ003 PPEDQPLEGKARTSPGGSSREPPLFCE--THTLPFQAPLARCHGRFLC 200 210 220 230 100 110 120 130 140 150 FLJ001 NKKEAGIVLSSFFWGYCLTQVVGGHLGDRIGGEKVILLSASAWGSITAVTPLLAHLSSAH >>KIAA0380 ( 1539 res) hh00518 (1539 aa) initn: 110 init1: 66 opt: 90 Z-score: 86.7 bits: 26.2 E(): 12 Smith-Waterman score: 90; 33.929% identity (53.571% similar) in 56 aa overlap (4-57:137-192) 10 20 30 FLJ001 HVDLGGA-ARVGQPGLGGSPGTQLCPRRLST-P ::.. . .: :: .:. :: :. : KIAA03 IKVNGTMVTNSSHLEVVKLIKSGAYVALTLLGSSPSSMGISGLQQDPSPAGAPRITSVIP 110 120 130 140 150 160 40 50 60 70 80 90 FLJ001 SPMQPPPDEARRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDFGWN :: ::: . ..: . :: : KIAA03 SPPPPPPLPPPQRITGPKPLQDPEVQKHATQILRNMLRQEEKELQDILPLYGDTSQRPSE 170 180 190 200 210 220 >>KIAA0731 ( 1096 res) hk03714 (1096 aa) initn: 104 init1: 48 opt: 88 Z-score: 86.2 bits: 25.6 E(): 13 Smith-Waterman score: 88; 30.000% identity (58.000% similar) in 50 aa overlap (14-60:1044-1093) 10 20 30 40 FLJ001 HVDLGGAARVGQPGLGGSPGTQLCPRRLST-PSPM--QPPPDE : ::. : . :: . :. :. : ::: KIAA07 YLGKFRRLEDFRVDPPMGEEGNHKRHSVVAGGGGGEGRKRCPSQSSSRPAAMISQPPTPP 1020 1030 1040 1050 1060 1070 50 60 70 80 90 100 FLJ001 ARRDMAGDTQWSRPECQAWTGTLLLGTCLLYCARSSMPICTVSMSQDFGWNKKEAGIVLS . . . :..:. . .. : KIAA07 TGQPVREDAKWTSQHSNTQTLGK 1080 1090 249 residues in 1 query sequences 2210745 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:44:01 2009 done: Fri Feb 27 10:44:01 2009 Total Scan time: 0.410 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]