# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj01834.fasta.huge -Q ../query/FLJ00326.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00326, 122 aa vs ./tmplib.10216 library 2210872 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.9599+/-0.00394; mu= 14.6603+/- 0.266 mean_var=81.6506+/-17.307, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.141937 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00068 ( 1194 res) as00068 (1194) 100 29.7 0.41 KIAA0722 ( 1066 res) hk02030s1 (1066) 87 27.0 2.4 FLJ00267 ( 1110 res) sj04085 (1110) 83 26.2 4.4 FLJ00203 ( 1154 res) sj04233s1 (1154) 82 26.0 5.1 KIAA1778 ( 341 res) pg00707 ( 341) 76 24.0 6.1 KIAA0346 ( 1682 res) hg01508s1 (1682) 82 26.2 6.3 KIAA0863 ( 1181 res) hk06535 (1181) 79 25.4 8 KIAA0435 ( 787 res) hh02241 ( 787) 77 24.7 8.4 FLJ00149 ( 792 res) sh05462 ( 792) 77 24.7 8.4 KIAA2031 ( 515 res) ef03841 ( 515) 75 24.1 8.8 KIAA0037 ( 1088 res) ha00929 (1088) 77 24.9 10 FLJ00086 ( 399 res) as00086 ( 399) 73 23.5 10 KIAA0250 ( 1122 res) ha02790 (1122) 76 24.8 12 FLJ00218 ( 174 res) sj05575 ( 174) 68 21.9 13 KIAA1753 ( 818 res) pj02614 ( 818) 74 24.2 13 KIAA1481 ( 1380 res) fj05724 (1380) 75 24.7 15 KIAA0381 ( 1114 res) ah04695 (1114) 74 24.3 16 FLJ00280 ( 440 res) sh01728 ( 440) 70 22.9 16 KIAA0807 ( 1329 res) hk04449(revised) (1329) 74 24.5 17 KIAA1236 ( 1840 res) pg00641 (1840) 75 24.9 18 FLJ00290 ( 150 res) sh02878 ( 150) 65 21.2 18 KIAA1853 ( 708 res) hj04155 ( 708) 71 23.4 19 KIAA0079 ( 1102 res) ha03543 (1102) 72 23.9 21 KIAA0147 ( 1630 res) ha01022s1 (1630) 73 24.4 22 FLJ00410 ( 305 res) sj09019 ( 305) 66 21.9 24 KIAA0054 ( 1943 res) ha00503s1 (1943) 73 24.5 25 KIAA0879 ( 461 res) hk07371 ( 461) 67 22.4 26 KIAA0407 ( 2143 res) hg01339 (2143) 73 24.6 26 KIAA1812 ( 803 res) hh13045 ( 803) 69 23.1 26 KIAA0473 ( 937 res) hh00220 ( 937) 69 23.2 29 KIAA0905 ( 1229 res) hk10341 (1229) 70 23.6 29 KIAA0217 ( 751 res) ha04826s1 ( 751) 68 22.9 29 KIAA1264 ( 753 res) hj01058 ( 753) 68 22.9 29 FLJ00263 ( 764 res) sj01530 ( 764) 68 22.9 29 KIAA0385 ( 1380 res) hh00802 (1380) 70 23.7 31 KIAA1648 ( 112 res) fg05002 ( 112) 60 20.0 31 FLJ00365 ( 399 res) sh05134 ( 399) 65 21.9 31 FLJ00321 ( 245 res) sh07670 ( 245) 63 21.1 32 FLJ00332 ( 201 res) sj03652 ( 201) 62 20.8 33 KIAA1865 ( 723 res) fj14303 ( 723) 67 22.6 33 KIAA1887 ( 967 res) fk02232 ( 967) 68 23.0 34 KIAA0181 ( 2079 res) ha02522s1 (2079) 71 24.1 34 KIAA1470 ( 564 res) fj01953 ( 564) 65 22.1 38 KIAA0115 ( 456 res) ha00643 ( 456) 64 21.7 39 KIAA0910 ( 1315 res) hg02207s1 (1315) 68 23.2 40 KIAA0400 ( 1022 res) hg01091 (1022) 67 22.9 40 KIAA0280 ( 291 res) ha06179 ( 291) 62 21.0 40 FLJ00330 ( 246 res) sj03258 ( 246) 61 20.7 42 KIAA0550 ( 1524 res) hh15909 (1524) 68 23.3 43 KIAA0446 ( 351 res) fk03072 ( 351) 62 21.2 44 >>FLJ00068 ( 1194 res) as00068 (1194 aa) initn: 73 init1: 48 opt: 100 Z-score: 113.4 bits: 29.7 E(): 0.41 Smith-Waterman score: 100; 24.510% identity (55.882% similar) in 102 aa overlap (6-96:684-785) 10 20 30 FLJ003 ELRPISLQRSFPGPETERH---TVCRCRDTMSLGG .: .:. : . : :. :: . :: FLJ000 PVGSTASLCVSQVPAAPAHPPLRKAYSFDRNLGQSLSEPACHCHHAATIAACRRPEAGGG 660 670 680 690 700 710 40 50 60 70 80 FLJ003 STPRVVKT-PPTAHLGLSSFSPLSLFKGPGLASTRGF-HGFRFSFPSFFPKV------AG . :.. : :: . :.. :.: . .:. : . ....... ..::.. : FLJ000 ALPQASPTVPPPGSSDPRSLNRLQLVLAEMVATEREYVRALEYTMENYFPELDRPDVPQG 720 730 740 750 760 770 90 100 110 120 FLJ003 TRAAFQHFMGHLVLLAVWPKAPQFLHLSCGWKGSDVSE :. :..:.: FLJ000 LRGQRAHLFGNLEKLRDFHCHFFLRELEACTRHPPRVAYAFLRHRVQFGMYALYSKNKPR 780 790 800 810 820 830 >>KIAA0722 ( 1066 res) hk02030s1 (1066 aa) initn: 42 init1: 42 opt: 87 Z-score: 99.5 bits: 27.0 E(): 2.4 Smith-Waterman score: 87; 29.358% identity (50.459% similar) in 109 aa overlap (4-107:486-588) 10 20 30 FLJ003 ELRPISLQRSFPGPETE-RHTVCRCRDTMSLGG :... :. :.: .. .: : ::::: KIAA07 NYQRIERNLQSPTQFQTPRSSAIRRSGSTSPLGFARASPSPPAHAEHGGVLARK-MSLGG 460 470 480 490 500 510 40 50 60 70 80 FLJ003 STPRVVKTPPTAHLGLSSFSP-LSLFKGPGLASTRGFHGFR--FSFPSFFPKVAGTRAAF . : . :. ..: : : .: : :: .. : : : :...: . KIAA07 GRPYT----PSPQVGTIPERPGWSGTPSPQGAEMRGGRSPRPGSSAPEHSPRTSGLGCRL 520 530 540 550 560 570 90 100 110 120 FLJ003 QHFMGHLV-LLAVWPKAPQFLHLSCGWKGSDVSE : .: : .: :: :. KIAA07 -HSAPNLSDLHVVRPKLPKPPTDPLGAVFSPPQASPPQPSHGLQSCRNLRGSPKLPDFLQ 580 590 600 610 620 >>FLJ00267 ( 1110 res) sj04085 (1110 aa) initn: 60 init1: 60 opt: 83 Z-score: 94.9 bits: 26.2 E(): 4.4 Smith-Waterman score: 83; 29.851% identity (56.716% similar) in 67 aa overlap (16-82:1019-1084) 10 20 30 40 FLJ003 ELRPISLQRSFPGPETERHTVCRCRDTMSLGGSTPRVVKTPPTAH :: . : : . : . ::. . .::: . FLJ002 WGSRASRSSWRNGGSLSFDAAVALARDRQRTEAQGVRRTQ-TCTEGGDYCLIPRTPPCSM 990 1000 1010 1020 1030 1040 50 60 70 80 90 100 FLJ003 LGLSSFSPLSLFKGPGLASTRGFHGFRFSFPSFFPKVAGTRAAFQHFMGHLVLLAVWPKA .. : ::: .. :. .. . :.:.: :.: FLJ002 ISAHSPRPLSCLELPSEGAEGSGSRSRLSLPPREPQVPDPLLSSQRRSYAFETQANPGKG 1050 1060 1070 1080 1090 1100 110 120 FLJ003 PQFLHLSCGWKGSDVSE FLJ002 EGL 1110 >>FLJ00203 ( 1154 res) sj04233s1 (1154 aa) initn: 71 init1: 71 opt: 82 Z-score: 93.6 bits: 26.0 E(): 5.1 Smith-Waterman score: 82; 34.615% identity (53.846% similar) in 52 aa overlap (9-59:36-83) 10 20 30 FLJ003 ELRPISLQRSFPGPETERHTVCRCRDTMSLGGSTPRVV :. :: . :: ..: ..:: . FLJ002 SSGWAELARCAPSSCKACKRARPRQGPERTRAPVGPGVAVHTPSLATPGATVGRASPRPL 10 20 30 40 50 60 40 50 60 70 80 90 FLJ003 KTPPTAH-LGLSSFSPLSLFKGPGLASTRGFHGFRFSFPSFFPKVAGTRAAFQHFMGHLV :: :: :: ::.:..: FLJ002 AQPPRAHPTGL----PLQLINGLSDEKVRWQETVENLQYMLNNISGDVLVAAGFVAYLGP 70 80 90 100 110 120 >>KIAA1778 ( 341 res) pg00707 (341 aa) initn: 39 init1: 39 opt: 76 Z-score: 92.3 bits: 24.0 E(): 6.1 Smith-Waterman score: 76; 29.333% identity (49.333% similar) in 75 aa overlap (8-74:149-223) 10 20 30 FLJ003 ELRPISLQRSFPGPETERHTVCRC----RDTMSLGGS :. ::: :. : . . . :: : KIAA17 LPDYFPERSRLQREAEYFELPELVRRLGAPQQPGPGPPPSRRGVHKEGSLGDELLPLGYS 120 130 140 150 160 170 40 50 60 70 80 FLJ003 TPR----VVKTPPTAHLGLSSFSPLSLFKGPGLASTRGFHGFRFSFPSFFPKVAGTRAAF :. . :. : :.: :: . :: :. .... : : : KIAA17 EPEQQEGASAGAPSPTLELASRSPSGGAAGPLLTPSQSLDGSRRSGYITIGYRGSYTIGR 180 190 200 210 220 230 90 100 110 120 FLJ003 QHFMGHLVLLAVWPKAPQFLHLSCGWKGSDVSE KIAA17 DAQADAKFRRVARITVCGKTSLAKEVFGDTLNESRDPDRPPERYTSRYYLKFNFLEQAFD 240 250 260 270 280 290 >>KIAA0346 ( 1682 res) hg01508s1 (1682 aa) initn: 55 init1: 55 opt: 82 Z-score: 92.0 bits: 26.2 E(): 6.3 Smith-Waterman score: 82; 30.508% identity (50.847% similar) in 59 aa overlap (12-70:38-91) 10 20 30 40 FLJ003 ELRPISLQRSFPGPETERHTVCRCRDTMSLGGSTPRVVKTP : :.. :: .. :. : . : KIAA03 VDPPGARAAREAFALGGLSCAGAWSSCPPHPPPRSAWLPGGRCSASI---GQPPLPAPLP 10 20 30 40 50 60 50 60 70 80 90 100 FLJ003 PTAHLGLSSFSPLSLFKGPGLASTRGFHGFRFSFPSFFPKVAGTRAAFQHFMGHLVLLAV :. : : :: : . . .:: . : .:: KIAA03 PS-H-GSSSGHPSKPYYAPGAPTPRPLHGKLESLHGCVQALLREPAQPGLWEQLGQLYES 70 80 90 100 110 120 >>KIAA0863 ( 1181 res) hk06535 (1181 aa) initn: 63 init1: 63 opt: 79 Z-score: 90.2 bits: 25.4 E(): 8 Smith-Waterman score: 79; 30.120% identity (49.398% similar) in 83 aa overlap (32-114:330-410) 10 20 30 40 50 60 FLJ003 LRPISLQRSFPGPETERHTVCRCRDTMSLGGSTPRVVKTPPTAHLGLSSFSPLSLFKGPG ::.: . :: ::.: . :: : : KIAA08 VISEHIKRTGLLKQTHIAPKPAAHLAAPANGSAPSAPAQPPCFHLALPQNSP-SPAAGQP 300 310 320 330 340 350 70 80 90 100 110 120 FLJ003 LASTRGFHGFRFSFPSFFPKVAGTRAAFQHFMGHLVLLAVWPKAPQFLHLSCGWKGSDVS .. ..: : : . : .. .:. : .. : ::: . :: : KIAA08 VTVAQGAPGSLTHSPPAAGQSHMTLVSSPLPVGQNSL-TLQPPAPQPVFLSHGVPLHQSV 360 370 380 390 400 410 FLJ003 E KIAA08 NPPVLPLSQPVGPVNKSVGTSVLPINQTVRPGVLPLTQPVGPINRPVGPGVLPVSPSVTP 420 430 440 450 460 470 >>KIAA0435 ( 787 res) hh02241 (787 aa) initn: 51 init1: 51 opt: 77 Z-score: 89.8 bits: 24.7 E(): 8.4 Smith-Waterman score: 77; 26.027% identity (49.315% similar) in 73 aa overlap (18-90:580-650) 10 20 30 40 FLJ003 ELRPISLQRSFPGPETERHTVCRCRDTMSLGGSTPRVVKTPPTAHLG .: : :. :. : : . :: . KIAA04 GGGAPTTGGNNAPNGGSQESSAEQPRKGGAQHGVSSCEGTQRTGRRKGR--SQSVQAHSA 550 560 570 580 590 600 50 60 70 80 90 100 FLJ003 LSSFSPLSLFKGPGLASTRGFHGFRFSFPSFFPKVAGTRAAFQHFMGHLVLLAVWPKAPQ ::. :. .:: : : . : : . ...:.: ... KIAA04 LSQRPPMLSSSGPILESRQTFLQTSTSVHELAQRLSGSRLSLHASATSLHSQPPPVTTTG 610 620 630 640 650 660 110 120 FLJ003 FLHLSCGWKGSDVSE KIAA04 HLSVRERAEALIRSSLGSSTSSTLSFLFGKRSFSSALVISGLSAAEGGNTSDTQSSSSVN 670 680 690 700 710 720 >>FLJ00149 ( 792 res) sh05462 (792 aa) initn: 51 init1: 51 opt: 77 Z-score: 89.7 bits: 24.7 E(): 8.4 Smith-Waterman score: 77; 26.027% identity (49.315% similar) in 73 aa overlap (18-90:573-643) 10 20 30 40 FLJ003 ELRPISLQRSFPGPETERHTVCRCRDTMSLGGSTPRVVKTPPTAHLG .: : :. :. : : . :: . FLJ001 GGGAPTTGGNNAPSGGSQESSAEQPRKGGAQHGVSSCEGTQRTGRRKGR--SQSVQAHSA 550 560 570 580 590 600 50 60 70 80 90 100 FLJ003 LSSFSPLSLFKGPGLASTRGFHGFRFSFPSFFPKVAGTRAAFQHFMGHLVLLAVWPKAPQ ::. :. .:: : : . : : . ...:.: ... FLJ001 LSQRPPMLSSSGPILESRQTFLQTSTSVHELAQRLSGSRLSLHASATSLHSQPPPVTTTG 610 620 630 640 650 660 110 120 FLJ003 FLHLSCGWKGSDVSE FLJ001 HLSVRERAEALIRSSLGSSTSSTLSFLFGKRSFSSALVISGLSAAEGGNTSDTQSSSSVN 670 680 690 700 710 720 >>KIAA2031 ( 515 res) ef03841 (515 aa) initn: 59 init1: 59 opt: 75 Z-score: 89.4 bits: 24.1 E(): 8.8 Smith-Waterman score: 75; 31.746% identity (55.556% similar) in 63 aa overlap (13-67:213-275) 10 20 30 FLJ003 ELRPISLQRSFPGPETERHTVCR--CRDTM----SLGGSTPR ::... :. : : . :: ..:: KIAA20 AVTGMPENVDRAREEIEAHITLRTGAFTDAGPDSDFHANGTDVCLDLLGAAASLWAKTPN 190 200 210 220 230 240 40 50 60 70 80 90 FLJ003 VVKTPPTAHLGLSSFSPLSLFKGPG--LASTRGFHGFRFSFPSFFPKVAGTRAAFQHFMG . :::: :: . . :. ..: :..:: KIAA20 QGRRPPTATAGLRGDTALGAPSAPEAFYAGSRGGPSVPDPGPASPYSGSGNGGFAFGAEG 250 260 270 280 290 300 100 110 120 FLJ003 HLVLLAVWPKAPQFLHLSCGWKGSDVSE KIAA20 PGAPVGTAAPDDCDFGFDFDFLALDLTVPAAATIWAPFERAAPLPAFSGCSTVNGAPGPP 310 320 330 340 350 360 122 residues in 1 query sequences 2210872 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:49 2009 done: Fri Feb 27 10:51:49 2009 Total Scan time: 0.300 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]