# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj02824.fasta.huge -Q ../query/FLJ00383.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00383, 380 aa vs ./tmplib.10216 library 2210614 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.6501+/-0.0037; mu= 19.7666+/- 0.250 mean_var=76.1944+/-16.706, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.146931 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1920 ( 445 res) ae00146 ( 445) 94 29.2 0.67 KIAA0977 ( 1207 res) hj07018 (1207) 88 28.6 2.7 KIAA1743 ( 1036 res) pj01380s1 (1036) 84 27.7 4.6 KIAA0196 ( 1164 res) ha02952 (1164) 84 27.7 4.8 KIAA0907 ( 569 res) hk10396 ( 569) 80 26.4 5.9 KIAA0653 ( 558 res) hk01718 ( 558) 79 26.2 6.8 KIAA0790 ( 1319 res) hk05609 (1319) 82 27.4 6.9 KIAA1948 ( 487 res) fh24556 ( 487) 77 25.7 8.5 KIAA0309 ( 3053 res) hg00096s1 (3053) 82 28.0 11 FLJ00252 ( 819 res) sj09394 ( 819) 77 26.0 11 FLJ00378 ( 855 res) sj00210 ( 855) 77 26.1 11 KIAA1800 ( 736 res) fj21226 ( 736) 76 25.7 12 FLJ00162 ( 449 res) sh06750 ( 449) 74 25.0 13 FLJ00406 ( 261 res) sj08464 ( 261) 72 24.2 13 KIAA1549 ( 1865 res) fh16155s1 (1865) 79 27.0 13 KIAA0914 ( 678 res) sj01106 ( 678) 75 25.5 14 KIAA0030 ( 914 res) ha01140 ( 914) 76 25.9 14 KIAA1768 ( 1207 res) ph00672(revised) (1207) 77 26.3 14 FLJ00242 ( 804 res) sj07550 ( 804) 75 25.6 15 KIAA0504 ( 331 res) hh00025 ( 331) 71 24.1 17 KIAA1211 ( 803 res) fh00041 ( 803) 74 25.4 17 KIAA1274 ( 861 res) hk09836s1 ( 861) 74 25.4 18 FLJ00151 ( 302 res) sh05780 ( 302) 70 23.9 18 KIAA1846 ( 354 res) fg06344s1 ( 354) 70 24.0 20 KIAA0113 ( 636 res) ha01652s1 ( 636) 72 24.8 20 KIAA1685 ( 1505 res) pf04287 (1505) 75 26.0 21 KIAA0135 ( 1351 res) ha01203s1 (1351) 74 25.7 23 KIAA1692 ( 855 res) fj05607 ( 855) 72 25.0 24 KIAA0888 ( 684 res) hk07993 ( 684) 71 24.6 24 KIAA1043 ( 2126 res) af02720 (2126) 75 26.2 25 KIAA0781 ( 950 res) hk09678 ( 950) 72 25.1 25 KIAA1436 ( 924 res) hh15451 ( 924) 71 24.8 29 KIAA1339 ( 409 res) fj00071 ( 409) 68 23.6 29 KIAA1413 ( 1399 res) fh14082(revised) (1399) 72 25.3 31 KIAA0630 ( 490 res) hh01735 ( 490) 68 23.8 32 KIAA1842 ( 526 res) fj22905s1 ( 526) 68 23.8 33 KIAA2030 ( 1023 res) ef00583 (1023) 70 24.7 35 KIAA0361 ( 1371 res) hh00072 (1371) 71 25.1 35 KIAA0273 ( 356 res) ha06723 ( 356) 66 23.1 36 KIAA0294 ( 1405 res) hf00223s1 (1405) 71 25.1 36 KIAA1738 ( 1127 res) pj00192s1 (1127) 70 24.8 37 KIAA1218 ( 864 res) fh03016 ( 864) 69 24.4 37 KIAA1752 ( 507 res) pj02555 ( 507) 67 23.6 37 KIAA0580 ( 1631 res) hj00601s1 (1631) 71 25.2 39 FLJ00079 ( 84 res) as00079 ( 84) 60 20.9 40 KIAA0865 ( 1900 res) hk06640y1 (1900) 71 25.3 42 FLJ00246 ( 1486 res) sj08543 (1486) 70 24.9 43 KIAA0587 ( 1171 res) hj02518 (1171) 69 24.6 44 KIAA1448 ( 1179 res) fh12320y1 (1179) 69 24.6 44 KIAA1875 ( 922 res) pf00972 ( 922) 68 24.2 44 >>KIAA1920 ( 445 res) ae00146 (445 aa) initn: 87 init1: 61 opt: 94 Z-score: 109.5 bits: 29.2 E(): 0.67 Smith-Waterman score: 97; 23.622% identity (52.362% similar) in 254 aa overlap (91-326:147-375) 70 80 90 100 110 FLJ003 KLGASPLHVDLATLRELKLNASLPALLLIRLPYTASSGLMA--PREVLTGNDEVIGQV-- : . .:.::.: : . . .. :. KIAA19 QPGEPVTEFSCWELEAGSLVYVHCGGPTQDLTFRVSNGLQASPPAMLKVVAVQLAIQIHR 120 130 140 150 160 170 120 130 140 150 160 170 FLJ003 ---LSTLKSEDVPYTAALTAVRPSRVARDVAV---VAGGLGRQLLQKQPVSPVIHPPVSY : .. .: . :. : :..::.: :.::: . :::: .. : KIAA19 STGLHLAQGSAMPILPTNLLVETSAVGQDVTVLFHVTGGLPFRELQKQGAGGV------- 180 190 200 210 220 180 190 200 210 220 230 FLJ003 NDTAPRILFWAQNFSVAYKDQWEDLTPLTFGVQELNLTGSFWNDSFARLSLTYERLFGTT .:. .:. . :...: . . . . . .:. :.: . . KIAA19 EDAE----WWV---TQAFHQQDVEQGHVRYRSTD---PQHYTEDTVENLDLQVQVSWEIL 230 240 250 260 270 240 250 260 270 280 FLJ003 VTFKFILANRLYPVSARHWFTMERLE-VHSNGS------VAYFNAS-QVTGPSIYSFHCE ...:... . : : : .:: .:.... .:...:. . .::: .:::: KIAA19 SNLSFLVTIQRATV----W--MLQLEPLHTQNTQQEALTTAHLEATLEEAGPSPPTFHCE 280 290 300 310 320 330 290 300 310 320 330 340 FLJ003 YVSSLSKKGSLLVARTQPSPWQMMLQDFQIQAFNVMGEQFSYASDCASFFSPGIWMGLLT :.. .::.. . :. : : . :: ..:: .: .. :: KIAA19 VVQA-PRKGNFQLQGTMLSDGQGFTQD-DVQAAEVTYGAMARASVAVEDTFCFHVTAPPY 340 350 360 370 380 390 350 360 370 380 FLJ003 SLFMLFIFTYGLHMILSLKTMDRFDDHKGPTISLTQIV KIAA19 FSPLCTFSIHIGGDPDMPVLTNVLVVPEGGGCVLSADQLFVKSLNSARYLYEVM 400 410 420 430 440 >>KIAA0977 ( 1207 res) hj07018 (1207 aa) initn: 80 init1: 57 opt: 88 Z-score: 98.5 bits: 28.6 E(): 2.7 Smith-Waterman score: 88; 25.641% identity (57.692% similar) in 78 aa overlap (92-169:1022-1097) 70 80 90 100 110 120 FLJ003 LGASPLHVDLATLRELKLNASLPALLLIRLPYTASSGLMAPREVLTGNDEVIGQVLSTLK : :: .::. : ..: : :.::: KIAA09 EQTLSPLSKMPHSVPQPLVEKTDDDVIGQAPAEASPPPIAPKPVTIPASQVSTQNLKTLK 1000 1010 1020 1030 1040 1050 130 140 150 160 170 180 FLJ003 SEDVPYTAALTAVRPSRVARDVAVVAGGLGRQLLQKQPVSPVIHPPVSYNDTAPRILFWA . .: . .. :: : :. . ..... .. .: ...::.. KIAA09 TFGAPRPYSSSG--PSPFALAVVKRSQSFSKERTESPSASALVQPPANTEEGKTHSVNKF 1060 1070 1080 1090 1100 190 200 210 220 230 240 FLJ003 QNFSVAYKDQWEDLTPLTFGVQELNLTGSFWNDSFARLSLTYERLFGTTVTFKFILANRL KIAA09 VDIPQLGVSDKENNSAHNEQNSQIPTPTDGPSFTVMRQSSLTFQSSDPEQMRQSLLTAIR 1110 1120 1130 1140 1150 1160 >>KIAA1743 ( 1036 res) pj01380s1 (1036 aa) initn: 53 init1: 53 opt: 84 Z-score: 94.6 bits: 27.7 E(): 4.6 Smith-Waterman score: 84; 24.793% identity (55.372% similar) in 121 aa overlap (25-137:478-598) 10 20 30 40 50 FLJ003 ECWREELSIEDFTAYGGVFGNKQDSAFSNLENALDLAPSSLVLPAVDWYAVSTL : ...:. .::. : .. : ::: : KIAA17 EYMSFMNQFLEHEWTNMQRFLLEISNPETLSNTAGFEGYIDLGRELSSLHSLLWEAVSQL 450 460 470 480 490 500 60 70 80 90 100 110 FLJ003 TTYLQEKLGASP-LHVDLATLRELKLNASLPALL-LIRLPYTASSGLMAPREVLTGNDEV . ::: : . :. : ...::. : : ..::.. : . .. .... KIAA17 EQSIVSKLGPLPRILRDVHTALSTPGSGQLPGTNDLASTPGSGSSSISAGLQKMVIENDL 510 520 530 540 550 560 120 130 140 150 160 FLJ003 IGQV-LSTLKS-----EDVPYTAALTAVRPSRVARDVAVVAGGLGRQLLQKQPVSPVIHP : . .. : : .:. ... ..:.:: KIAA17 SGLIDFTRLPSPTPENKDLFFVTRSSGVQPSPARSSSYSEANEPDLQMANGGKSLSMVDL 570 580 590 600 610 620 170 180 190 200 210 220 FLJ003 PVSYNDTAPRILFWAQNFSVAYKDQWEDLTPLTFGVQELNLTGSFWNDSFARLSLTYERL KIAA17 QDARTLDGEAGSPAGPDVLPTDGQAAAAQLVAGWPARATPVNLAGLATVRRAGQTPTTPG 630 640 650 660 670 680 >>KIAA0196 ( 1164 res) ha02952 (1164 aa) initn: 97 init1: 64 opt: 84 Z-score: 94.1 bits: 27.7 E(): 4.8 Smith-Waterman score: 84; 25.676% identity (59.459% similar) in 74 aa overlap (48-121:563-633) 20 30 40 50 60 70 FLJ003 VFGNKQDSAFSNLENALDLAPSSLVLPAVDWYAVSTLTTYLQEKLGASPLHVDLATLREL : ....:. .::.. ..: : : KIAA01 RKFLHQMIRTINIKEEVLITMQIVGDLSFAWQLIDSFTSIMQESIRVNPSMVTKLRATFL 540 550 560 570 580 590 80 90 100 110 120 130 FLJ003 KLNASLPALLLIRLPYTASSGLMAPREVLTGNDEVIGQVLSTLKSEDVPYTAALTAVRPS :: ..: : :.:. . : :.. . .: :... : ..:. KIAA01 KLASALD-LPLLRINQANSPDLLSVSQYYSG--ELVSYVRKVLQIIPESMFTSLLKIIKL 600 610 620 630 640 140 150 160 170 180 190 FLJ003 RVARDVAVVAGGLGRQLLQKQPVSPVIHPPVSYNDTAPRILFWAQNFSVAYKDQWEDLTP KIAA01 QTHDIIEVPTRLDKDKLRDYAQLGPRYEVAKLTHAISIFTEGILMMKTTLVGIIKVDPKQ 650 660 670 680 690 700 >>KIAA0907 ( 569 res) hk10396 (569 aa) initn: 99 init1: 76 opt: 80 Z-score: 92.5 bits: 26.4 E(): 5.9 Smith-Waterman score: 80; 25.547% identity (51.095% similar) in 137 aa overlap (37-166:27-163) 10 20 30 40 50 60 FLJ003 LSIEDFTAYGGVFGNKQDSAFSNLENALDLAPSSLVL--PAVDWYAVSTLTTYLQEKLGA ::. :.. ::. :.. .: KIAA09 VEAVAMSAGSATHPGAGGRRSKWDQPAPAPLLFLPPAAPGGEVTSSGGSPGGTTAA 10 20 30 40 50 70 80 90 100 110 120 FLJ003 SPLHVDLATLRELKLNASLPALLLIRLPYTASSGLMAPREVLTGNDEVIGQVLSTLKSED .: :. :.:: : : .. .:: :.:: . ::.: :.. .. .: KIAA09 PSGALDAAAAVAAKINAMLMAKGKLKPTQNASEKLQAPGKGLTSNKSKDDLVVAEVEIND 60 70 80 90 100 110 130 140 150 160 170 FLJ003 VPYTAALTAVR---PSRVARDVAVVAGGLGRQLL--QKQPVSPVIHPPVSYNDTAPRILF :: : .: ....: ..... :: . .: :.: .: KIAA09 VPLTCRNLLTRGQTQDEISRLSGAAVSTRGRFMTTEEKAKVGPGDRPLYLHVQGQTRELV 120 130 140 150 160 170 180 190 200 210 220 230 FLJ003 WAQNFSVAYKDQWEDLTPLTFGVQELNLTGSFWNDSFARLSLTYERLFGTTVTFKFILAN KIAA09 DRAVNRIKEIITNGVVKAATGTSPTFNGATVTVYHQPAPIAQLSPAVSQKPPFQSGMHYV 180 190 200 210 220 230 >>KIAA0653 ( 558 res) hk01718 (558 aa) initn: 89 init1: 61 opt: 79 Z-score: 91.4 bits: 26.2 E(): 6.8 Smith-Waterman score: 79; 29.310% identity (56.897% similar) in 58 aa overlap (260-317:90-145) 230 240 250 260 270 280 FLJ003 TVTFKFILANRLYPVSARHWFTMERLEVHSNGSVAYFNASQVTGPSIYSFHCEYVSSLSK : .:...:. . .. ..: ::: . KIAA06 ADTQEKEVRAMVGSDVELSCACPEGSRFDLNDVYVYWQTSE--SKTVVTYHIPQNSSLEN 60 70 80 90 100 110 290 300 310 320 330 340 FLJ003 KGSLLVARTQPSPWQMMLQDFQIQAFNVMGEQFSYASDCASFFSPGIWMGLLTSLFMLFI : :. :: :. ::... ::: KIAA06 VDSRYRNRALMSPAGMLRGDFSLRLFNVTPQDEQKFHCLVLSQSLGFQEVLSVEVTLHVA 120 130 140 150 160 170 >>KIAA0790 ( 1319 res) hk05609 (1319 aa) initn: 45 init1: 45 opt: 82 Z-score: 91.3 bits: 27.4 E(): 6.9 Smith-Waterman score: 84; 28.467% identity (48.175% similar) in 137 aa overlap (37-162:1123-1248) 10 20 30 40 50 60 FLJ003 LSIEDFTAYGGVFGNKQDSAFSNLENALDLAPSSLVLPAVDWYAVSTLTTYLQE---KLG .: : : : . .: ::: ::: KIAA07 VKRGSPASPTSPSDCPPALAPRPLSGQAPGSPPSTRPPP--WLSELPENTSLQEHGVKLG 1100 1110 1120 1130 1140 1150 70 80 90 100 110 FLJ003 ASPLH-------VDLATLRELKLNASLPALLLIRLPYTASSGLMA-PREVLTGNDEVIGQ . . ::: :: : ::.: .. : . ::. . : . :. .. : . : KIAA07 PALTRKVSCARGVDLETLTENKLHA--EGIDLTEEPYSDKHGRCGIPEALVQRYAEDLDQ 1160 1170 1180 1190 1200 120 130 140 150 160 170 FLJ003 VLSTLKSEDVPYTAALTAVRPSRVARDVAVVAGGLGRQLLQKQPVSPVIHPPVSYNDTAP .:: . :. : . .:. .::: . . ..:::: KIAA07 -----PERDVAANMDQIRVKQLRKQHRMAIPSGGLTE--ICRKPVSPGCISSVSDWLISI 1210 1220 1230 1240 1250 1260 180 190 200 210 220 230 FLJ003 RILFWAQNFSVAYKDQWEDLTPLTFGVQELNLTGSFWNDSFARLSLTYERLFGTTVTFKF KIAA07 GLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAARLFKLPPGPEAM 1270 1280 1290 1300 1310 >>KIAA1948 ( 487 res) fh24556 (487 aa) initn: 38 init1: 38 opt: 77 Z-score: 89.7 bits: 25.7 E(): 8.5 Smith-Waterman score: 77; 30.000% identity (52.500% similar) in 80 aa overlap (232-306:39-118) 210 220 230 240 250 260 FLJ003 VQELNLTGSFWNDSFARLSLTYERLFGTTVTFKFILANRLYPVSARHWFTMERLEVHSNG : :. : : .: .. .: :::.: :. KIAA19 STLEMLLLLVKENSMCLLSCFILDLETKYETKKLSLENDIYEINLSQWKIMERIENHGLK 10 20 30 40 50 60 270 280 290 300 310 FLJ003 SVAYFNASQVTGPSIYSFHCE--YVSSL---SKKGSLLVARTQPSPWQMMLQDFQIQAFN .. : . :: . . . : ::. :.: : ::. .: : . KIAA19 GLILKNDWESTGKIEGQERPQEGYFSSVKMPSEKVSSYQKRTSVTPHQRLHFVDKPYECK 70 80 90 100 110 120 320 330 340 350 360 370 FLJ003 VMGEQFSYASDCASFFSPGIWMGLLTSLFMLFIFTYGLHMILSLKTMDRFDDHKGPTISL KIAA19 ECGKAFRVRQQLTFHHRIHTGEKPYECKECGMAFRQTAHLTRHQRLHSGEKLYECKECGE 130 140 150 160 170 180 >>KIAA0309 ( 3053 res) hg00096s1 (3053 aa) initn: 101 init1: 67 opt: 82 Z-score: 87.7 bits: 28.0 E(): 11 Smith-Waterman score: 82; 25.664% identity (56.637% similar) in 113 aa overlap (64-169:1243-1354) 40 50 60 70 80 90 FLJ003 LDLAPSSLVLPAVDWYAVSTLTTYLQEKLGASPLHVDLATLRELKLNASLPALLLIRLPY .::: ... . :..::: . :: KIAA03 PGAAPLTISSPLHVPSSLPGPASSPMPIPNSSPLASPVSSTVSVPLSSSLPISVPTTLPA 1220 1230 1240 1250 1260 1270 100 110 120 130 140 FLJ003 TASSGLM----APREVLTGNDEVIGQVLSTLKSEDVPYTAALTAVRPSRVARDVAVVAGG ::. : :: : ... .. .: : . :: . . .. :: .. ...... : KIAA03 PASAPLTIPISAPLTVSASGPALLTSVTPPL-APVVPAAPGPPSLAPSGASPSASALTLG 1280 1290 1300 1310 1320 1330 150 160 170 180 190 200 FLJ003 LGR--QLLQKQ-PVSPVIHPPVSYNDTAPRILFWAQNFSVAYKDQWEDLTPLTFGVQELN :. .: ..: : :.. :.: KIAA03 LATAPSLSSSQTPGHPLLLAPTSSHVPGLNSTVAPACSPVLVPASALASPFPSAPNPAPA 1340 1350 1360 1370 1380 1390 >>FLJ00252 ( 819 res) sj09394 (819 aa) initn: 45 init1: 45 opt: 77 Z-score: 87.5 bits: 26.0 E(): 11 Smith-Waterman score: 77; 24.000% identity (54.400% similar) in 125 aa overlap (78-195:417-536) 50 60 70 80 90 100 FLJ003 WYAVSTLTTYLQEKLGASPLHVDLATLRELKLNASLPALLLI--RLPYTASSGLMAPREV .:. ::. : : . .: . .. FLJ002 PSPSTAEEAGSQLEGSQSPRSPSSKRPSLHRLGKEKPAMARTSSRAPCSPTSVSDVDSDA 390 400 410 420 430 440 110 120 130 140 150 160 FLJ003 LT-GNDEVIGQVLSTLKSEDVPYTAALTAVRPSRVARDVAVVAGGLGRQLLQKQPVSPVI :. :: :: . ..:.: . : ::. : :: .:. .: ... :.:.. FLJ002 LSRGNFEVGFRPQRSVKAERAQQPEAGEDRRPAGGASDVEAVT-----RLARSKGVGPAL 450 460 470 480 490 500 170 180 190 200 210 220 FLJ003 HP-PVSYNDTAP---RILFWAQNFSVAYKDQWEDLTPLTFGVQELNLTGSFWNDSFARLS : :..... .: .. :. :.. .. .:: FLJ002 SPGPAGFQSCSPGWCSAFYEADCFGADVHNYVKDLGRQQADGALPDAQSPVSPRPWHCRV 510 520 530 540 550 560 230 240 250 260 270 280 FLJ003 LTYERLFGTTVTFKFILANRLYPVSARHWFTMERLEVHSNGSVAYFNASQVTGPSIYSFH FLJ002 GQGVSFQQSFLVTAGDRWHRVPRAPNRVTLVLVPPPRGCQDGQGPLPGLSSTSRDRLVCT 570 580 590 600 610 620 380 residues in 1 query sequences 2210614 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:33 2009 done: Fri Feb 27 11:02:33 2009 Total Scan time: 0.500 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]