# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj02853.fasta.huge -Q ../query/FLJ00328.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00328, 238 aa vs ./tmplib.10216 library 2210756 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 6.2952+/-0.00682; mu= 11.6260+/- 0.460 mean_var=267.4403+/-58.613, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.078426 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1623 ( 1236 res) fj04650 (1236) 137 28.1 2.5 FLJ00094 ( 376 res) as00094 ( 376) 127 26.1 3 KIAA0248 ( 1880 res) ha02775s1 (1880) 134 28.1 3.9 KIAA0865 ( 1900 res) hk06640y1 (1900) 131 27.7 4.9 FLJ00361 ( 366 res) sh04352 ( 366) 115 24.7 7.7 KIAA0900 ( 503 res) hk09606s1 ( 503) 117 25.2 7.7 FLJ00248 ( 501 res) sj08681 ( 501) 113 24.7 10 FLJ00330 ( 246 res) sj03258 ( 246) 107 23.5 12 KIAA0691 ( 762 res) hk03735 ( 762) 113 25.0 13 KIAA0705 ( 1483 res) hg03359s1 (1483) 117 26.0 13 KIAA0346 ( 1682 res) hg01508s1 (1682) 117 26.1 14 KIAA1071 ( 675 res) hj05664s2 ( 675) 110 24.6 15 KIAA0599 ( 697 res) hj03137 ( 697) 110 24.6 16 KIAA1836 ( 718 res) fh12206(revised) ( 718) 110 24.7 16 KIAA1477 ( 870 res) fj04927 ( 870) 111 24.9 16 FLJ00242 ( 804 res) sj07550 ( 804) 110 24.7 17 KIAA0672 ( 824 res) hk02382 ( 824) 110 24.8 17 KIAA0907 ( 569 res) hk10396 ( 569) 107 24.2 18 KIAA0666 ( 1085 res) hk02075 (1085) 111 25.1 18 KIAA0250 ( 1122 res) ha02790 (1122) 111 25.1 18 KIAA1856 ( 1134 res) fh03203 (1134) 111 25.1 18 KIAA1859 ( 761 res) bm01165 ( 761) 108 24.5 19 KIAA1862 ( 1070 res) aj00563 (1070) 110 25.0 19 KIAA1029 ( 1015 res) fh00363 (1015) 108 24.7 22 KIAA1773 ( 3434 res) hj00752s2 (3434) 115 26.4 23 FLJ00280 ( 440 res) sh01728 ( 440) 101 23.3 25 KIAA1375 ( 546 res) fj04426 ( 546) 102 23.6 26 KIAA0612 ( 1810 res) hg00654s1 (1810) 109 25.2 27 KIAA0495 ( 209 res) hg00106 ( 209) 95 22.1 28 KIAA0099 ( 1175 res) hk05583 (1175) 105 24.5 30 KIAA0790 ( 1319 res) hk05609 (1319) 105 24.5 31 KIAA0450 ( 1182 res) hj05822 (1182) 104 24.3 32 KIAA0665 ( 760 res) hk02064 ( 760) 101 23.7 33 KIAA1740 ( 1119 res) pj00674 (1119) 103 24.2 34 KIAA1783 ( 1560 res) fg01285 (1560) 105 24.7 34 FLJ00201 ( 705 res) sj04110 ( 705) 100 23.5 34 KIAA1983 ( 418 res) fk09737(revised) ( 418) 96 22.7 36 KIAA0574 ( 405 res) hj00204 ( 405) 95 22.5 38 KIAA1855 ( 1270 res) fg04654 (1270) 102 24.2 39 KIAA0381 ( 1114 res) ah04695 (1114) 101 24.0 39 FLJ00236 ( 702 res) sj07289 ( 702) 98 23.3 40 KIAA1870 ( 832 res) hh05136b ( 832) 99 23.5 40 KIAA1811 ( 715 res) ha06731 ( 715) 98 23.3 40 FLJ00291 ( 159 res) sh02993 ( 159) 88 21.1 42 KIAA0755 ( 1093 res) hk04532 (1093) 100 23.8 42 KIAA1887 ( 967 res) fk02232 ( 967) 99 23.6 43 FLJ00269 ( 1383 res) sj06049 (1383) 101 24.1 44 KIAA0616 ( 634 res) hg03623 ( 634) 96 23.0 44 KIAA1865 ( 723 res) fj14303 ( 723) 96 23.1 47 KIAA0992 ( 772 res) hk07554 ( 772) 96 23.1 49 >>KIAA1623 ( 1236 res) fj04650 (1236 aa) initn: 128 init1: 128 opt: 137 Z-score: 99.3 bits: 28.1 E(): 2.5 Smith-Waterman score: 137; 33.735% identity (44.578% similar) in 83 aa overlap (146-228:1139-1218) 120 130 140 150 160 170 FLJ003 VVDFLPASQLSVQSQIALFSAHAGVAADIRPLGVPAPPGAPPCSYLRGPPGGASLQGCSP :. .: :: : . : : . .: .: KIAA16 PEEEGSGTALAPVGAPALRTRRSRSPAPPPPMPLPRPPTPPAGCWQWDGPWGCGGEGAAP 1110 1120 1130 1140 1150 1160 180 190 200 210 220 230 FLJ003 AQTAAARRGASPAKLHPPPEDQPLEGKARTSPGGSSREPPLFCETHTLPFQAPLARCHGR :. :: . : ::: ::: : : : ::: . : :: KIAA16 RQALAAAECPPCAMAGPPPAPQPLPGDASFY---SLPPPPLPPTSDPLETPAPSPSPSPS 1170 1180 1190 1200 1210 1220 FLJ003 FLC KIAA16 PQAVCWPSGWH 1230 >>FLJ00094 ( 376 res) as00094 (376 aa) initn: 124 init1: 54 opt: 127 Z-score: 97.7 bits: 26.1 E(): 3 Smith-Waterman score: 127; 31.206% identity (51.773% similar) in 141 aa overlap (109-236:183-313) 80 90 100 110 120 130 FLJ003 SCTFTGGAENCSARTGLGGVHGLGCLPCAQDRSRQRPVVDF--LPASQLS--VQSQIALF : .:: .:: . :.:: :.. . : FLJ000 GPPTPPTTPKTELQQAGAKPELKLEGRRPVDSGRQN--IDFSNVDISELSSEVMGTMDAF 160 170 180 190 200 210 140 150 160 170 180 190 FLJ003 SAHAGVAADIRPLGVPAPPGAPPCSYLRGPPGGASLQ-GCSP--AQTAAARRGASPAKLH ..: . ::: :::: : .: ::: .. : :: :. .: .:::.. FLJ000 DVHE--FDQYLPLGGPAPP-EPGQAY-----GGAYFHAGVSPVWAHKSAPSASASPTETG 220 230 240 250 260 200 210 220 230 FLJ003 PP-PE---DQPLEGKARTSPGGSSREPPLFCETHTLPFQ--APLARCHGRFLC :: :. .:: :. .: :: .. . : .:.: .: . FLJ000 PPRPHIKTEQPSPGHYGDQPRGSPDYGSCSGQSSATPAAPAGPFAGSQGDYGDLQASSYY 270 280 290 300 310 320 FLJ000 GAYPGYAPGLYQYPCFHSPRRPYASPLLNGLALPPAHSPTSHWDQPVYTTLTRP 330 340 350 360 370 >>KIAA0248 ( 1880 res) ha02775s1 (1880 aa) initn: 53 init1: 53 opt: 134 Z-score: 95.8 bits: 28.1 E(): 3.9 Smith-Waterman score: 134; 31.776% identity (56.075% similar) in 107 aa overlap (101-198:1726-1827) 80 90 100 110 120 FLJ003 TAAETITRSCTFTGGAENCSARTGLGGVHGLGC-LPCAQDRSRQRPVV-DFLPASQLSVQ . : :: .:. .. :. : .: . : KIAA02 LLVMDTAEIFHSADARGGGPSALWEITWERIDCFLPHLRDELFKQTVIQDPMP---MEPQ 1700 1710 1720 1730 1740 1750 130 140 150 160 170 180 FLJ003 SQIALFSAH-AGVAADIRPLGVPAPPGAPP----CSYLR--GPPGGASLQGCSPAQTAAA .: : ::: ...:.: : : : :: : :.. . .: ...: . ::. .. . KIAA02 GQKPLASAHLTSAAGDTRTPGHPPPPEIPSELGACDFEKPESPRAASSSSPGSPVASSPS 1760 1770 1780 1790 1800 1810 190 200 210 220 230 FLJ003 RRGASPAKLHPPPEDQPLEGKARTSPGGSSREPPLFCETHTLPFQAPLARCHGRFLC : ::. ::: :: KIAA02 R--LSPTPDGPPPLAQPPLILQPLASPLQVGVPPMTLPIILNPALIEATSPVPLLATPRP 1820 1830 1840 1850 1860 1870 >>KIAA0865 ( 1900 res) hk06640y1 (1900 aa) initn: 143 init1: 73 opt: 131 Z-score: 93.9 bits: 27.7 E(): 4.9 Smith-Waterman score: 136; 27.642% identity (45.528% similar) in 123 aa overlap (131-229:1600-1714) 110 120 130 140 150 FLJ003 LGCLPCAQDRSRQRPVVDFLPASQLSVQSQIALFSAHAGVAADIRPLGVPAPPGAPP--- .:::.. . .. : : ::: :: KIAA08 YPVQPEGSSPLSPQYSKSQKGDGDRPASPGLALFNGSGRASPPSTPPPPPPPPGPPPAPY 1570 1580 1590 1600 1610 1620 160 170 180 190 200 FLJ003 --CSYLRGPPGGASLQGCSPAQTAAARRGASPA--KLHPPPEDQPLEGKARTSP------ :..: :: :: . :.. : : :.:: :.. :. : . : KIAA08 RPCAHLAFPP--------EPAPVNAGKAGPSAEAPKVHPKPNSAPVAGPCSSFPKIPYSP 1630 1640 1650 1660 1670 1680 210 220 230 FLJ003 ----------GGSSREPPL-FCETHTLPFQAPLARCHGRFLC .::: :: . . :...:: KIAA08 VKATRADARKAGSSASPPAPYSPPSSRPLSSPLDELASLFNSGRSVLRKSAAGRKIREAE 1690 1700 1710 1720 1730 1740 KIAA08 GFETNMNISSRDDPSTSEITSETQDRNANNHGIQLSNSLSSAITAENGNSISNGLPEEDG 1750 1760 1770 1780 1790 1800 >>FLJ00361 ( 366 res) sh04352 (366 aa) initn: 160 init1: 71 opt: 115 Z-score: 90.5 bits: 24.7 E(): 7.7 Smith-Waterman score: 115; 30.769% identity (52.747% similar) in 91 aa overlap (139-222:143-228) 110 120 130 140 150 160 FLJ003 DRSRQRPVVDFLPASQLSVQSQIALFSAHAGVAADIRPLGVPAPPGAPPCSYLRGPPGGA :.:: : ::.:: . ::.:: FLJ003 LPPGEAAPRATGGGRRAPRQDRGPAWRGRRGAAATESPGRFRRSPGGPPGTICAQPPAGA 120 130 140 150 160 170 170 180 190 200 210 220 FLJ003 SLQGCS-PAQ----TAAARRGASPAKLHPPPEDQPLE--GKARTSPGGSSREPPLFCETH .. : . ::. .. :: ..:. : :. :: :.:: . : : :... FLJ003 GVPGPGRPARELLSVGLQRRPGAPGAASPGPRLQPHAPTGRARLGVRG-----PAGCQAR 180 190 200 210 220 230 FLJ003 TLPFQAPLARCHGRFLC . FLJ003 SASVARRANSPRATSRLRPGLQLQPRGEHRPRDLHGDLLSPRRPPDDPWARPPRSDRFPG 230 240 250 260 270 280 >>KIAA0900 ( 503 res) hk09606s1 (503 aa) initn: 172 init1: 76 opt: 117 Z-score: 90.5 bits: 25.2 E(): 7.7 Smith-Waterman score: 117; 31.858% identity (44.248% similar) in 113 aa overlap (121-228:278-387) 100 110 120 130 140 150 FLJ003 ARTGLGGVHGLGCLPCAQDRSRQRPVVDFLPASQLSVQSQIALFSAHAGVAADIRPLGVP :::: ... . :: : : :: : KIAA09 DYSYPATPNHSLHPQPVTPSYAAGDVPPHGPASQ-AAEHEYRPPSASARHMALNRPQQPP 250 260 270 280 290 300 160 170 180 190 200 FLJ003 APPG--APPCSYLRGPPGGASLQGCSPAQTAAARRGASPAKLHPPPEDQPLEGKARTSPG :: :: : .: . :. : ::: ..: ::: : : .:: KIAA09 PPPPPQAPEGSQASAPMAPADY-GMLPAQIIEYYNPSGPPP-PPPPPVIPSAQTAFVSPL 310 320 330 340 350 360 210 220 230 FLJ003 GSSREPPL---FCETHTLPFQAPLARCHGRFLC .::. ::. : . : KIAA09 QMPMQPPFPASASSTHAAPPHPPSTGLLVTAPPPPGPPPPPPGPPGPGSSLSSSPMHGPP 370 380 390 400 410 420 >>FLJ00248 ( 501 res) sj08681 (501 aa) initn: 104 init1: 80 opt: 113 Z-score: 88.1 bits: 24.7 E(): 10 Smith-Waterman score: 113; 37.931% identity (57.471% similar) in 87 aa overlap (138-215:95-178) 110 120 130 140 150 160 FLJ003 QDRSRQRPVVDFLPASQLSVQSQIALFSAHAGVAADIRPLGVPAPPG--APP-CSYLRGP :.::: :::: : :: . :::: FLJ002 LFPEFTAQSPGGARGSPAGARATWPGDAQGASVAA--RPLGWVRQEGTFAPRRGGRLRGP 70 80 90 100 110 120 170 180 190 200 210 FLJ003 PGGASLQGCSPAQTAAA-----RRGASPAKLHPPPEDQPLE-GKARTSPGGSSREPPLFC .:. . :: : :::.. :. . :.:: .. ...:.:::. : :: FLJ002 GRAAGTRRYRPALGNAECCPGRRRGGARAR-RRRPRDQAFRRARTRASPGAPERTPPGSW 130 140 150 160 170 180 220 230 FLJ003 ETHTLPFQAPLARCHGRFLC FLJ002 GHPHGTGEGLGRSRGGTATGGLHAFTTRSTEASPLSLLEIGSLGLPCTRHPWAPGEGAWG 190 200 210 220 230 240 >>FLJ00330 ( 246 res) sj03258 (246 aa) initn: 96 init1: 48 opt: 107 Z-score: 87.1 bits: 23.5 E(): 12 Smith-Waterman score: 107; 32.117% identity (51.825% similar) in 137 aa overlap (105-224:1-128) 80 90 100 110 120 130 FLJ003 TITRSCTFTGGAENCSARTGLGGVHGLGCLPCAQDRSR-QR-P--VVDFLPASQLSVQSQ : :. :: :: : .. ::.: : :. FLJ003 PTASPRSSSQRYPEAAAPALPTSTLRGTSS 10 20 30 140 150 160 170 FLJ003 IALFS--AHAGVAADIRPLGVPAPPGAPP---------CSYLRGPPGGASLQGCSPAQTA : . . : :: : :..:.::. : . : : . :. : . : : FLJ003 PARKGDLSGPGEAAGSRLLAAPGPPSHFPQEVPRRAGRAAALPQPRADAAAPGPGGLQ-A 40 50 60 70 80 180 190 200 210 220 230 FLJ003 AARRGASPAKLHPPPEDQPLEGKARTSPGGSSREPP--LFCETHTLPFQAPLARCHGRFL :::: :.. :. .: ..:. :. . :: ::..:.:: FLJ003 AARR----AQVSVGPRPRP---RGRSHPA-LAFAPPRSCFCRSHNLPQILALPPSFAPWS 90 100 110 120 130 140 FLJ003 C FLJ003 PLSQLPPPRVTSSPRALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSL 150 160 170 180 190 200 >>KIAA0691 ( 762 res) hk03735 (762 aa) initn: 105 init1: 51 opt: 113 Z-score: 86.4 bits: 25.0 E(): 13 Smith-Waterman score: 123; 25.556% identity (58.889% similar) in 90 aa overlap (126-215:300-387) 100 110 120 130 140 150 FLJ003 GGVHGLGCLPCAQDRSRQRPVVDFLPASQLSVQSQIALFSAHAGVAADIRPLGVPAPPGA :..:... :. : . .. : :.. KIAA06 PTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSPAKNG-SKPVHSNQHPQSPAV 270 280 290 300 310 320 160 170 180 190 200 210 FLJ003 PPCSYLRGPPGGASLQGCSPAQTAAARRGASPAKLHPPPEDQPLEGKARTSPGGSSREPP :: .: ::: .:: . .:..... .: :. : : : .... .: ... :: KIAA06 PP-TYPSGPPPAASALSTTPGNNGVPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPP 330 340 350 360 370 380 220 230 FLJ003 LFCETHTLPFQAPLARCHGRFLC KIAA06 APSGPSTTQPRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSPA 390 400 410 420 430 440 >>KIAA0705 ( 1483 res) hg03359s1 (1483 aa) initn: 116 init1: 52 opt: 117 Z-score: 86.3 bits: 26.0 E(): 13 Smith-Waterman score: 117; 32.353% identity (53.922% similar) in 102 aa overlap (121-215:1043-1138) 100 110 120 130 140 150 FLJ003 ARTGLGGVHGLGCLPCAQDRSRQRPVVDFLPASQLSVQSQIALFSAHAGVAADIRPLGVP :.: : ..: . :. . :. ::. : KIAA07 NMPHADIVKLIKDAGLSVTLRIIPQEELNSPTSAPSSEKQSPM--AQQSPLAQQSPLAQP 1020 1030 1040 1050 1060 1070 160 170 180 190 200 FLJ003 APPGAPPCSYLR--GPPGGASLQG--CSPAQTAAARRGASPAKLHPPPEDQ---PLEGKA .: : : : . .:: .::: : . . ::. ..: .:: : ::. KIAA07 SP--ATPNSPIAQPAPPQPLQLQGHENSYRSEVKARQDVKPDIRQPPFTDYRQPPLD--Y 1080 1090 1100 1110 1120 210 220 230 FLJ003 RTSPGGSSREPPLFCETHTLPFQAPLARCHGRFLC : :::. ..:: KIAA07 RQPPGGDYQQPPPLDYRQPPLLDYRQHSPDTRQYPLSDYRQPQDFDYFTVDMEKGAKGFG 1130 1140 1150 1160 1170 1180 238 residues in 1 query sequences 2210756 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:50 2009 done: Fri Feb 27 10:51:51 2009 Total Scan time: 0.400 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]