# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj02853.fasta.nr -Q ../query/FLJ00328.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00328, 238 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7821466 sequences Expectation_n fit: rho(ln(x))= 5.6200+/-0.000194; mu= 7.7177+/- 0.011 mean_var=102.0122+/-19.554, 0's: 40 Z-trim: 45 B-trim: 364 in 1/64 Lambda= 0.126984 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748528|dbj|BAC03401.1| FLJ00328 protein [Homo ( 238) 1676 316.6 2.2e-84 >>gi|21748528|dbj|BAC03401.1| FLJ00328 protein [Homo sap (238 aa) initn: 1676 init1: 1676 opt: 1676 Z-score: 1671.3 bits: 316.6 E(): 2.2e-84 Smith-Waterman score: 1676; 100.000% identity (100.000% similar) in 238 aa overlap (1-238:1-238) 10 20 30 40 50 60 FLJ003 SLWSSVSSPIIWGIELHTWQDFALKLIFKIKKKKPLPFSHINPERERGSGKPAHGSNLLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 SLWSSVSSPIIWGIELHTWQDFALKLIFKIKKKKPLPFSHINPERERGSGKPAHGSNLLQ 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 TFLGWERSLLTAAETITRSCTFTGGAENCSARTGLGGVHGLGCLPCAQDRSRQRPVVDFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 TFLGWERSLLTAAETITRSCTFTGGAENCSARTGLGGVHGLGCLPCAQDRSRQRPVVDFL 70 80 90 100 110 120 130 140 150 160 170 180 FLJ003 PASQLSVQSQIALFSAHAGVAADIRPLGVPAPPGAPPCSYLRGPPGGASLQGCSPAQTAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 PASQLSVQSQIALFSAHAGVAADIRPLGVPAPPGAPPCSYLRGPPGGASLQGCSPAQTAA 130 140 150 160 170 180 190 200 210 220 230 FLJ003 ARRGASPAKLHPPPEDQPLEGKARTSPGGSSREPPLFCETHTLPFQAPLARCHGRFLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 ARRGASPAKLHPPPEDQPLEGKARTSPGGSSREPPLFCETHTLPFQAPLARCHGRFLC 190 200 210 220 230 238 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 15:44:07 2009 done: Fri Feb 27 15:49:12 2009 Total Scan time: 718.900 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]