# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj02919.fasta.huge -Q ../query/FLJ00329.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00329, 349 aa vs ./tmplib.10216 library 2210645 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.6659+/-0.00501; mu= 18.0537+/- 0.338 mean_var=146.5042+/-32.188, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.105962 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1820 ( 1644 res) hh01321 (1644) 120 30.3 1.1 KIAA1924 ( 613 res) hh01339 ( 613) 110 28.0 1.9 KIAA1865 ( 723 res) fj14303 ( 723) 109 28.0 2.3 KIAA1311 ( 889 res) fh11512 ( 889) 99 26.6 7.5 KIAA0306 ( 1451 res) hg00063 (1451) 101 27.3 7.7 KIAA1423 ( 616 res) fh08369(revised) ( 616) 97 26.0 7.7 KIAA1511 ( 1253 res) fg04486(revised) (1253) 100 27.0 7.9 FLJ00284 ( 366 res) sh02281 ( 366) 93 25.0 9.1 KIAA0911 ( 1056 res) hj05129(revised) (1056) 97 26.4 10 FLJ00349 ( 146 res) sg00018 ( 146) 87 23.5 11 KIAA1760 ( 2219 res) af00030 (2219) 99 27.3 12 KIAA0495 ( 209 res) hg00106 ( 209) 87 23.7 13 FLJ00263 ( 764 res) sj01530 ( 764) 93 25.6 13 FLJ00104 ( 287 res) as00104 ( 287) 88 24.1 14 KIAA0602 ( 962 res) hg01082b ( 962) 92 25.6 16 KIAA1187 ( 813 res) fk03027 ( 813) 91 25.3 17 KIAA1498 ( 1731 res) hh01611 (1731) 94 26.3 18 KIAA1355 ( 1189 res) fj01564 (1189) 91 25.6 20 KIAA0722 ( 1066 res) hk02030s1 (1066) 90 25.4 21 FLJ00052 ( 368 res) as00052 ( 368) 85 23.8 21 KIAA0527 ( 768 res) hg02246 ( 768) 88 24.8 22 KIAA0765 ( 952 res) hk04803s1 ( 952) 89 25.1 22 KIAA2031 ( 515 res) ef03841 ( 515) 86 24.2 23 KIAA0160 ( 803 res) ha03912s1 ( 803) 88 24.9 23 KIAA0026 ( 288 res) ha00640 ( 288) 83 23.3 23 KIAA1783 ( 1560 res) fg01285 (1560) 90 25.6 25 KIAA0807 ( 1329 res) hk04449(revised) (1329) 89 25.4 26 KIAA1608 ( 872 res) fj20142 ( 872) 87 24.8 26 FLJ00375 ( 708 res) sh07824 ( 708) 86 24.5 26 KIAA1214 ( 462 res) fh01431 ( 462) 84 23.8 26 FLJ00224 ( 896 res) sj06244 ( 896) 87 24.8 27 KIAA0909 ( 1234 res) hk10471 (1234) 88 25.2 28 KIAA2038 ( 917 res) pj01991 ( 917) 86 24.6 30 FLJ00281 ( 1495 res) sh01915 (1495) 88 25.3 31 KIAA0200 ( 1042 res) ha02508 (1042) 86 24.7 32 KIAA1637 ( 479 res) fj00747s1 ( 479) 82 23.6 33 KIAA0293 ( 1505 res) hg03205 (1505) 87 25.2 34 KIAA1292 ( 595 res) hk05468(revised) ( 595) 82 23.7 37 KIAA1762 ( 1460 res) fh27937(revised) (1460) 86 25.0 38 KIAA0369 ( 794 res) hh00177 ( 794) 83 24.1 38 KIAA1190 ( 174 res) hg03443a ( 174) 75 21.7 42 FLJ00093 ( 977 res) as00093 ( 977) 83 24.2 42 KIAA1720 ( 421 res) pf00447 ( 421) 79 23.0 43 FLJ00251 ( 1007 res) sj08895 (1007) 83 24.3 43 KIAA1581 ( 545 res) fj05690 ( 545) 80 23.3 43 FLJ00296 ( 187 res) sh03944 ( 187) 75 21.8 43 KIAA0422 ( 1160 res) hh01205s1 (1160) 83 24.4 46 KIAA0348 ( 1443 res) hg01551(revised) (1443) 84 24.7 46 KIAA1081 ( 1003 res) bg00262 (1003) 82 24.1 47 KIAA1822 ( 533 res) fh13781 ( 533) 79 23.2 48 >>KIAA1820 ( 1644 res) hh01321 (1644 aa) initn: 109 init1: 74 opt: 120 Z-score: 105.7 bits: 30.3 E(): 1.1 Smith-Waterman score: 120; 34.146% identity (58.537% similar) in 82 aa overlap (275-348:985-1064) 250 260 270 280 290 300 FLJ003 LGLRLDEAQCATLARTFEQLVENLFSLPLDVPFSGLRKVRP-PRLQTFLRGSAARAGLPD :: . . : .: :: .. ::. .. :::. KIAA18 PGEEGPDGERAPGDSTTSDASLAQKPNKPAVPEAPIAKKEPVPRGKS-LRSRRVHRGLPE 960 970 980 990 1000 1010 310 320 330 340 FLJ003 PDGTPSAHPARPSPLL--GTAAGPGGGRLCGGGVAVGSG-----PGLCAGSLV . .: :. :. :: . .:: :.. :.: : : : : .:. :: KIAA18 AEDSPCRAPVLPKDLLLPESCTGPPQGQMEGAG-APGRGASEGLPRMCTRSLTALSEPRT 1020 1030 1040 1050 1060 1070 KIAA18 PGPPGLTTTPAPPDKLGGKQRAAFKSGKRVGKPSPKAASSPSNPAALPVASDSSPMGSKT 1080 1090 1100 1110 1120 1130 >>KIAA1924 ( 613 res) hh01339 (613 aa) initn: 105 init1: 75 opt: 110 Z-score: 101.2 bits: 28.0 E(): 1.9 Smith-Waterman score: 110; 40.260% identity (53.247% similar) in 77 aa overlap (275-344:27-95) 250 260 270 280 290 300 FLJ003 LGLRLDEAQCATLARTFEQLVENLFSLPLDVPFS--GLRKVRPPRLQTFLRGSAARAGLP :: : : :... ::: : :: .: KIAA19 AGSSSGGAMARGSARLAGVPRIPGSGVPGSRVGGRSAQGPRL-----GPEAR--VP 10 20 30 40 310 320 330 340 FLJ003 DPDGT--PSAHPARPSPLLGTAAGPGGGRLCGGGVAVGSG---PGLCAGSLV :. :.::: :. : ..: : . : : ::: : : :: : KIAA19 AQAGSRLPGAHPRAPGAWLPSGARPRPASLAGVGVA-GEGAESPGSCLVPEARPSPAVAP 50 60 70 80 90 100 KIAA19 ARVAESPDARRPLPAAWQHPFLNVFRHFRVDEWKRSAKQGDVAVVTDKTLKGAVYRIRGS 110 120 130 140 150 160 >>KIAA1865 ( 723 res) fj14303 (723 aa) initn: 57 init1: 57 opt: 109 Z-score: 99.8 bits: 28.0 E(): 2.3 Smith-Waterman score: 109; 41.538% identity (53.846% similar) in 65 aa overlap (285-347:180-236) 260 270 280 290 300 310 FLJ003 ATLARTFEQLVENLFSLPLDVPFSGLRKVRPPRL--QTFLRGSAARAGLPDPDGTPSAHP :: : ::.: : :. : :: : : : KIAA18 ASVASRRGTHGGLVTGLPNPGGGGGPQLTVPPNLLPQTLLNGPASAAVLPPPP--PHALG 150 160 170 180 190 200 320 330 340 FLJ003 ARPSPLLGTAAGPGGGRLCGGGVAVGSGPGLCAGSLV .: : : : ::. :: . .:. ::. : : KIAA18 SRGPP---TPAPPGAP---GGPACLGGTPGVSATSSSASSSTSSSVAEVGVGAGGKRPGS 210 220 230 240 250 260 KIAA18 VSSTDQERELKEKQRNAEALAELSESLRNRAEEWASKPKMVRDTLLTLAGCTPYEVRFKK 270 280 290 300 310 320 >>KIAA1311 ( 889 res) fh11512 (889 aa) initn: 103 init1: 78 opt: 99 Z-score: 90.7 bits: 26.6 E(): 7.5 Smith-Waterman score: 99; 41.463% identity (48.780% similar) in 41 aa overlap (302-342:147-185) 280 290 300 310 320 330 FLJ003 PLDVPFSGLRKVRPPRLQTFLRGSAARAGLPDPDGTPSAHPARPSPLLGTAAGPGGGRLC : : : : : :. :. ::: : KIAA13 CVLGDLCQFDHGNDPLVVDEVALPSMIPFPPPPPGLPPPPP--PGMLMPPMPGPGPGPGP 120 130 140 150 160 170 340 FLJ003 GGGVAVGSGPGLCAGSLV : : . : ::: KIAA13 GPGPGPGPGPGPGHSMRLPVPQGHGQPPPSVVLPIPRPPITQSSLINSRDQPGTSAVPNL 180 190 200 210 220 230 >>KIAA0306 ( 1451 res) hg00063 (1451 aa) initn: 92 init1: 92 opt: 101 Z-score: 90.5 bits: 27.3 E(): 7.7 Smith-Waterman score: 101; 43.243% identity (72.973% similar) in 37 aa overlap (306-341:609-645) 280 290 300 310 320 330 FLJ003 PFSGLRKVRPPRLQTFLRGSAARAGLPDPDGTPS-AHPARPSPLLGTAAGPGGGRLCGGG :::. . :: :. . . ..:::: :.: KIAA03 AATSPAPHLVAGPLLGTVGKAPATVTNLLVGTPGYGAPAPPAVQFIAQGAPGGGTTAGSG 580 590 600 610 620 630 340 FLJ003 VAVGSGPGLCAGSLV ...:::: KIAA03 AGAGSGPNGPVPLGILQPGALGKAGGITQVQYILPTLPQQLQVAPAPAPAPGTKAAAPSG 640 650 660 670 680 690 >>KIAA1423 ( 616 res) fh08369(revised) (616 aa) initn: 84 init1: 64 opt: 97 Z-score: 90.5 bits: 26.0 E(): 7.7 Smith-Waterman score: 97; 40.426% identity (51.064% similar) in 47 aa overlap (302-346:56-100) 280 290 300 310 320 FLJ003 PLDVPFSGLRKVRPPRLQTFLRGSAARAGLPDPDGTPSAHPAR--PSPLLGTAAGPGGGR : : : ..::: :.: : .:: KIAA14 PTRAVSSSSRARGGALSALGPSPARPLTTSPAPAPPPRSRPARQQPDPQCWEKRGGAGGD 30 40 50 60 70 80 330 340 FLJ003 LCGGGVAVGSGPGLCAGSLV :: :.: ::: : KIAA14 TKGG--AAGPGPGRLRGMDAEYPAFEPPLCSELKHLCRRLREAYRELKEDLTPFKDDRYY 90 100 110 120 130 140 >>KIAA1511 ( 1253 res) fg04486(revised) (1253 aa) initn: 98 init1: 69 opt: 100 Z-score: 90.2 bits: 27.0 E(): 7.9 Smith-Waterman score: 100; 47.727% identity (72.727% similar) in 44 aa overlap (306-347:196-236) 280 290 300 310 320 330 FLJ003 PFSGLRKVRPPRLQTFLRGSAARAGLPDPDGTPSAHPAR--PSPLLGTAAGPGGGRLCGG :. .: ::. :.: :.:: :.:. : KIAA15 VYWSFPRNEREICMYSSFQYRGGPGAGAAGGAAGASPAEEGPQPPPGAAA-PAGS--APG 170 180 190 200 210 220 340 FLJ003 GVAVGSGPGLCAGSLV :::.:..::: ::. KIAA15 GVAAGASPGLGAGAGAAGCGGEGLPFRRGIRLLDSGSVENVLQVGFHLSGTVTELATASE 230 240 250 260 270 280 >>FLJ00284 ( 366 res) sh02281 (366 aa) initn: 51 init1: 51 opt: 93 Z-score: 89.2 bits: 25.0 E(): 9.1 Smith-Waterman score: 93; 40.000% identity (54.545% similar) in 55 aa overlap (294-343:93-146) 270 280 290 300 310 320 FLJ003 LVENLFSLPLDVPFSGLRKVRPPRLQTFLRGSAARAGLPDPDGTPSAHPARPSPLLGTAA :: . . : . .: : : .: :. FLJ002 EEEWRHVTPAQIDCFGEYVEPQDCRVSPGGGSKEKEAKPPQEDLKGALVALTSERFGEAS 70 80 90 100 110 120 330 340 FLJ003 --GPGGGRLC---GGGVAVGSGPGLCAGSLV ::: ::.: :: : ::.::: FLJ002 LQGPGLGRVCEQEPGGPA-GSAPGLPPPQHGAIPLPDEVKTHSSFWKPFQCPECGKGFSR 130 140 150 160 170 180 >>KIAA0911 ( 1056 res) hj05129(revised) (1056 aa) initn: 102 init1: 52 opt: 97 Z-score: 88.4 bits: 26.4 E(): 10 Smith-Waterman score: 97; 42.647% identity (52.941% similar) in 68 aa overlap (272-335:37-101) 250 260 270 280 290 FLJ003 RILLGLRLDEAQCATLARTFEQLVENLFSLPLDVPFSGLRKVRP--PRLQTFLRGSAARA : . : : :: :: :: ::.:: KIAA09 ARRCSEAGRAPRPERAAQRHGGGGGGSSLDPRSSPRRGAAGPRPLEPRELRELR-SASRA 10 20 30 40 50 60 300 310 320 330 340 FLJ003 GLPDPDGTPS-AHPARPSPLLGTAAGPG-GGRLCGGGVAVGSGPGLCAGSLV : . :. : ::.: :. :: .: :::::: KIAA09 --PPCRSRPGLAMLRRPAPALAPAARLLLAGLLCGGGVWAARVNKHKPWLEPTYHGIVTE 70 80 90 100 110 120 KIAA09 NDNTVLLDPPLIALDKDAPLRFAESFEVTVTKEGEICGFKIHGQNVPFDAVVVDKSTGEG 130 140 150 160 170 180 >>FLJ00349 ( 146 res) sg00018 (146 aa) initn: 77 init1: 51 opt: 87 Z-score: 87.8 bits: 23.5 E(): 11 Smith-Waterman score: 90; 30.769% identity (47.115% similar) in 104 aa overlap (253-346:40-141) 230 240 250 260 270 FLJ003 GGPVSVYDASKALTFRMAARILLGLRLDEAQC---ATLARTFEQLVENLFSLPLDVPFSG :: .: . :. : . :: : : FLJ003 HPFMFLSPQCKRAACFLSAGSVGSEPGPSVQCLCTQIIACVTEDSVLSCHLLPSCCPVPG 10 20 30 40 50 60 280 290 300 310 320 330 FLJ003 LRKVRPPRL----QTFLRGSAARAGLPDPD---GTPSAHPARPSPLLGTAAGPGGGRLCG : :: : :.. :: .:. : :.:.. : . . .: :: . : FLJ003 -RTRMPPSLSGPWQSLRPGSEGRGRGPAGRRGLGAPDTLAPREGAGVRWSARAGGPLVSG 70 80 90 100 110 120 340 FLJ003 GGVAVGSGPGLCAGSLV :.: : :: :.: FLJ003 LGTA-GLGPPGCVGPRLWP 130 140 349 residues in 1 query sequences 2210645 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:51 2009 done: Fri Feb 27 10:51:51 2009 Total Scan time: 0.480 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]