# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj02959.fasta.huge -Q ../query/FLJ00196.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00196, 284 aa vs ./tmplib.10216 library 2210710 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.1271+/-0.00386; mu= 17.7490+/- 0.260 mean_var=84.3270+/-18.777, 0's: 0 Z-trim: 1 B-trim: 15 in 1/39 Lambda= 0.139666 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1892 ( 476 res) fk04164 ( 476) 96 28.5 0.86 FLJ00281 ( 1495 res) sh01915 (1495) 98 29.6 1.3 FLJ00093 ( 977 res) as00093 ( 977) 96 29.0 1.3 FLJ00020 ( 1142 res) as00020 (1142) 96 29.1 1.4 KIAA1427 ( 439 res) fh02770 ( 439) 88 26.9 2.5 KIAA0246 ( 2589 res) ef02679 (2589) 91 28.5 4.6 KIAA0662 ( 1114 res) hk01953s1 (1114) 87 27.2 5 KIAA1831 ( 663 res) hk00543 ( 663) 84 26.3 5.6 KIAA1539 ( 543 res) fg02356 ( 543) 82 25.8 6.6 KIAA1292 ( 595 res) hk05468(revised) ( 595) 82 25.8 6.9 KIAA0817 ( 2785 res) hg01392s2 (2785) 87 27.8 8.4 KIAA1805 ( 534 res) fk00014 ( 534) 80 25.4 8.6 KIAA0075 ( 174 res) ha01209 ( 174) 75 23.7 9.1 FLJ00066 ( 162 res) as00066 ( 162) 74 23.4 10 KIAA1997 ( 1685 res) bj00195y1 (1685) 83 26.7 11 KIAA1464 ( 621 res) fh18679 ( 621) 78 25.1 12 FLJ00070 ( 1382 res) as00070 (1382) 81 26.1 13 FLJ00165 ( 146 res) sh07210 ( 146) 70 22.6 17 FLJ00176 ( 403 res) sj00934 ( 403) 74 24.0 17 KIAA0324 ( 2800 res) ee08846s1 (2800) 82 26.8 17 KIAA0650 ( 848 res) hj04147 ( 848) 77 25.0 17 KIAA1755 ( 1110 res) fg04230(revised) (1110) 78 25.4 17 KIAA0430 ( 1506 res) hg02974 (1506) 79 25.8 18 KIAA1621 ( 787 res) hj04505 ( 787) 75 24.6 22 KIAA0606 ( 1369 res) ph00195 (1369) 77 25.3 23 FLJ00395 ( 1105 res) sj06062 (1105) 76 25.0 23 KIAA0894 ( 553 res) hk08775 ( 553) 73 24.0 23 KIAA0222 ( 1204 res) ha02586 (1204) 76 25.1 24 KIAA0827 ( 1608 res) hh03726 (1608) 77 25.4 25 KIAA0774 ( 1381 res) bh00283 (1381) 76 25.1 26 KIAA0979 ( 1483 res) hj07056s1 (1483) 76 25.2 27 KIAA0709 ( 1484 res) ah06501 (1484) 76 25.2 27 KIAA0322 ( 1614 res) hg00462s1 (1614) 76 25.2 28 FLJ00248 ( 501 res) sj08681 ( 501) 71 23.5 29 KIAA0938 ( 1257 res) hh04777s1 (1257) 74 24.7 32 KIAA0775 ( 639 res) hk05255 ( 639) 71 23.7 33 KIAA2031 ( 515 res) ef03841 ( 515) 70 23.3 34 KIAA1078 ( 1365 res) fg04938 (1365) 74 24.7 34 KIAA1073 ( 675 res) hj06550 ( 675) 71 23.7 34 KIAA0422 ( 1160 res) hh01205s1 (1160) 73 24.4 36 KIAA0500 ( 213 res) hg00404 ( 213) 66 22.0 36 KIAA0412 ( 720 res) hg03242 ( 720) 71 23.7 36 KIAA1461 ( 1498 res) fh17578 (1498) 74 24.8 36 KIAA1973 ( 1176 res) pf00154 (1176) 73 24.4 36 KIAA0320 ( 1933 res) bg00151 (1933) 75 25.1 36 KIAA0810 ( 824 res) hk05647s1 ( 824) 71 23.8 39 KIAA1053 ( 508 res) hh05049 ( 508) 69 23.1 39 FLJ00123 ( 255 res) sh00869 ( 255) 66 22.1 40 KIAA0035 ( 707 res) ha01976 ( 707) 70 23.5 41 KIAA0298 ( 901 res) hf00341(revised) ( 901) 71 23.9 41 >>KIAA1892 ( 476 res) fk04164 (476 aa) initn: 52 init1: 52 opt: 96 Z-score: 107.5 bits: 28.5 E(): 0.86 Smith-Waterman score: 96; 31.707% identity (50.000% similar) in 82 aa overlap (144-221:392-473) 120 130 140 150 160 170 FLJ001 GHMTPVLSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGYAATGDVGREEGKELR---GH : ::..: : :. : :..:. :. KIAA18 RGSGIRSVSFYEHIITVGTGQGSLLFYDIRAQRFLEERLSACYGSKPRLAGENLKLTTGK 370 380 390 400 410 420 180 190 200 210 220 FLJ001 G-LGHDALSLSAFAPSCCLCRVVSDHCYPFSGRERDEAGPAPPCMMHSRAMGRGKRQATA : :.:: . :. . .: ::: :: . :: : .:. : KIAA18 GWLNHDETWRNYFSDIDFFPNAVYTHCYDSSGTKLFVAGGPLPSGLHGNYAGLWS 430 440 450 460 470 230 240 250 260 270 280 FLJ001 HCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQGKPPYPAPWFQKLVPA >>FLJ00281 ( 1495 res) sh01915 (1495 aa) initn: 126 init1: 50 opt: 98 Z-score: 104.5 bits: 29.6 E(): 1.3 Smith-Waterman score: 98; 22.143% identity (46.429% similar) in 140 aa overlap (150-283:1227-1361) 120 130 140 150 160 170 FLJ001 LSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGYAATGDVGREEGKELRGHGLGHDALSL : : ..:..: . .::. ::. : FLJ002 RLSLSSESELPSLPLFSEKSKTTKDSPQAARDGKRGVGSAGWPDRVTFRGQYTGHEYHVL 1200 1210 1220 1230 1240 1250 180 190 200 210 220 230 FLJ001 SAFAPSCCLCRVVSDHCYPFSGRER------DEAGPAPPCMMHSRAMGRGKRQATAHCPN : : : :: :. .. : :: : .. :. : :. FLJ002 SPKAVPKGNGTVSCPHCRPIRTQDAGGAVTGDPLGPPPADTLQCPLCGQVGSPPEADGPG 1260 1270 1280 1290 1300 1310 240 250 260 270 280 FLJ001 SYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQGKPPYPAPWFQKLVPA : ... . ..: . .:. . :. ... . .:: :. :. .: FLJ002 SATSGAE--KATTRRKASSTPSP--KQRSKQAGSSPRPP-PGLWYLATAPPAPAPPAFCL 1320 1330 1340 1350 1360 1370 FLJ002 HLLGSHHALSTCRCVLCACRTYLSPTSCQVAAHSLSPTSPETPALHPARPGRPRGAQQGP 1380 1390 1400 1410 1420 1430 >>FLJ00093 ( 977 res) as00093 (977 aa) initn: 79 init1: 50 opt: 96 Z-score: 104.3 bits: 29.0 E(): 1.3 Smith-Waterman score: 96; 22.143% identity (45.714% similar) in 140 aa overlap (150-283:736-870) 120 130 140 150 160 170 FLJ001 LSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGYAATGDVGREEGKELRGHGLGHDALSL : : ..:..: . .::. ::. : FLJ000 RLSLSSESELPSLPLFSEKSKTTKDSPQAARDGKRGVGSAGWPDRVTFRGQYTGHEYHVL 710 720 730 740 750 760 180 190 200 210 220 230 FLJ001 SAFAPSCCLCRVVSDHCYPFSGRER------DEAGPAPPCMMHSRAMGRGKRQATAHCPN : : : :: :. .. : :: : .. :. : :. FLJ000 SPKAVPKGNGTVSCPHCRPIRTQDAGGAVTGDPLGPPPADTLQCPLCGQVGSPPEADGPG 770 780 790 800 810 820 240 250 260 270 280 FLJ001 SYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQGKPPYPAPWFQKLVPA : ... . ..: . :. . :. ... . .:: :. :. .: FLJ000 SATSGAE--KATTRRKAPSTPSP--KQRSKQAGSSPRPP-PGLWYLATAPPAPAPPAFAY 830 840 850 860 870 880 FLJ000 ISSVPIMPYPPAAVYYAPAGPTSAQPAAKWPPTASPPPARRHRHSIQLDLGDLEELNKAL 890 900 910 920 930 940 >>FLJ00020 ( 1142 res) as00020 (1142 aa) initn: 126 init1: 50 opt: 96 Z-score: 103.6 bits: 29.1 E(): 1.4 Smith-Waterman score: 96; 22.143% identity (45.714% similar) in 140 aa overlap (150-283:901-1035) 120 130 140 150 160 170 FLJ001 LSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGYAATGDVGREEGKELRGHGLGHDALSL : : ..:..: . .::. ::. : FLJ000 RLSLSSESELPSLPLFSEKSKTTKDSPQAARDGKRGVGSAGWPDRVTFRGQYTGHEYHVL 880 890 900 910 920 930 180 190 200 210 220 230 FLJ001 SAFAPSCCLCRVVSDHCYPFSGRER------DEAGPAPPCMMHSRAMGRGKRQATAHCPN : : : :: :. .. : :: : .. :. : :. FLJ000 SPKAVPKGNGTVSCPHCRPIRTQDAGGAVTGDPLGPPPADTLQCPLCGQVGSPPEADGPG 940 950 960 970 980 990 240 250 260 270 280 FLJ001 SYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQGKPPYPAPWFQKLVPA : ... . ..: . :. . :. ... . .:: :. :. .: FLJ000 SATSGAE--KATTRRKAPSTPSP--KQRSKQAGSSPRPP-PGLWYLATAPPAPAPPAFAY 1000 1010 1020 1030 1040 FLJ000 ISSVPIMPYPPAAVYYAPAGPTSAQPAAKWPPTASPPPARRHRHSIQLDLGDLEELNKAL 1050 1060 1070 1080 1090 1100 >>KIAA1427 ( 439 res) fh02770 (439 aa) initn: 48 init1: 48 opt: 88 Z-score: 99.2 bits: 26.9 E(): 2.5 Smith-Waterman score: 88; 25.000% identity (48.214% similar) in 112 aa overlap (169-272:24-130) 140 150 160 170 180 190 FLJ001 GRLDGAWWFLRRRGYAATGDVGREEGKELRGHGLGHDALSLSAFAPSCCLCRVVSDHCYP : :: : :. :. :::: : .: KIAA14 AAAGPSPSPGAGTMVLSVPVIALGATLG-TATSILALCGVTCLCR----HMHP 10 20 30 40 200 210 220 230 240 250 FLJ001 FSG---RERD-EAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYR----L .: :..: . : : .. : . :... : . .. ::: :. . KIAA14 KKGLLPRDQDPDLEKAKPSLLGSAQQFNVKKSTEPVQPRALLKFPDIYGPRPAVTAPEVI 50 60 70 80 90 100 260 270 280 FLJ001 GSNDKEIMKELMENGPVQGKPPYPAPWFQKLVPA . : . . ..:.. .:: KIAA14 NYADYSLRSTEEPTAPASPQPPNDSRLKRQVTEELFILPQNGVVEDVCVMETWNPEKAAS 110 120 130 140 150 160 >>KIAA0246 ( 2589 res) ef02679 (2589 aa) initn: 129 init1: 68 opt: 91 Z-score: 94.4 bits: 28.5 E(): 4.6 Smith-Waterman score: 91; 31.148% identity (49.180% similar) in 61 aa overlap (180-235:230-282) 150 160 170 180 190 200 FLJ001 RRGYAATGDVGREEGKELRGHGLGHDALSLSAFAPSCCLCRVVSDHCYP-FSGRERDEAG :: :::: .: : .. . . . KIAA02 CLCFAGYTGPHCDQELPVCQELRCPQNTQCSAEAPSC--------RCLPGYTQQGSECRA 200 210 220 230 240 250 210 220 230 240 250 260 FLJ001 PAP----PCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMEN : : :: . .. : :: :::..: KIAA02 PNPCWPSPCSLLAQCSVSPKGQAQCHCPENYHGDGMVCLPKDPCTDNLGGCPSNSTLCVY 260 270 280 290 300 310 270 280 FLJ001 GPVQGKPPYPAPWFQKLVPA KIAA02 QKPGQAFCTCRPGLVSINSNASAGCFAFCSPFSCDRSATCQVTADGKTSCVCRESEVGDG 320 330 340 350 360 370 >>KIAA0662 ( 1114 res) hk01953s1 (1114 aa) initn: 89 init1: 63 opt: 87 Z-score: 93.9 bits: 27.2 E(): 5 Smith-Waterman score: 87; 30.189% identity (49.057% similar) in 53 aa overlap (181-233:15-65) 160 170 180 190 200 210 FLJ001 RGYAATGDVGREEGKELRGHGLGHDALSLSAFAPSCCLCRVVSDHCYPFSGRERDEAGPA : .: :.::. : : ..: : :. KIAA06 TSSRSRAAARRGNMATVPVYCVCRLPYDVTRPRAAR--PPARPG 10 20 30 40 220 230 240 250 260 270 FLJ001 PPCMMHSRAMGRGKRQATAHCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQGK : . :. . . :::: KIAA06 PTRAAQRRGRATAPDIDIYHCPNCEKTHGKSTLKKKRTWHKHGPGQAPDVKPVQNGSQLF 50 60 70 80 90 100 >>KIAA1831 ( 663 res) hk00543 (663 aa) initn: 93 init1: 41 opt: 84 Z-score: 92.9 bits: 26.3 E(): 5.6 Smith-Waterman score: 84; 44.186% identity (55.814% similar) in 43 aa overlap (134-171:333-375) 110 120 130 140 150 160 FLJ001 ASDRVSIHSLGHMTPVLSPQNLLSCDTHQQQGCRGGRLDGAWWFLRRRGYAATG--DVGR : : : .: : ::.::. : : .: KIAA18 AAPPALIEGSATEVYAGEWRADRRSGFGVSQRSNGLRYEGEWLGNRRHGYGRTTRPDGSR 310 320 330 340 350 360 170 180 190 200 210 FLJ001 EEGKELRG---HGLGHDALSLSAFAPSCCLCRVVSDHCYPFSGRERDEAGPAPPCMMHSR :::: :. :: KIAA18 EEGKYKRNRLVHGGRVRSLLPLALRRGKVKEKVDRAVEGARRAVSAARQRQEIAAARAAD 370 380 390 400 410 420 >>KIAA1539 ( 543 res) fg02356 (543 aa) initn: 95 init1: 55 opt: 82 Z-score: 91.7 bits: 25.8 E(): 6.6 Smith-Waterman score: 82; 28.235% identity (50.588% similar) in 85 aa overlap (201-284:174-252) 180 190 200 210 220 FLJ001 GLGHDALSLSAFAPSCCLCRVVSDHCYPFSGRERDEAGPAPPCMMHSRAMG-RGKRQATA : . ::::: ..:. .. : . KIAA15 GAWSPPCPPSNASCNTLHTRDWASPDPGGQGSLGESPGPAPPGQLHTLDTDLHSLAQIGG 150 160 170 180 190 200 230 240 250 260 270 280 FLJ001 HCPNSYVNNNDIYQVTPVYRLGSNDKEIMKELMENGPVQGKPPYPAPWFQKLVPA . : . :.:. .. : :. . . : :: : :: : : ..:.:: KIAA15 KSPVAGVGNGG--SLWPRESPGTANGH-SPEHTPPGP--G-PPGPCPTKRRLLPAGEAPD 210 220 230 240 250 KIAA15 VSSEEEGPAPRRRRGSLGHPTAANSSDAKATPFWSHLLPGPKEPVLDPTDCGPMGRRLKG 260 270 280 290 300 310 >>KIAA1292 ( 595 res) hk05468(revised) (595 aa) initn: 61 init1: 39 opt: 82 Z-score: 91.3 bits: 25.8 E(): 6.9 Smith-Waterman score: 82; 30.526% identity (50.526% similar) in 95 aa overlap (198-282:490-580) 170 180 190 200 210 220 FLJ001 RGHGLGHDALSLSAFAPSCCLCRVVSDHCYPFSGRERDEA--G-PAPPCMMHSRAMGRGK : :: .:. : : :.:: :: ... : KIAA12 SLSSSVSRAPRTSSSSLQADQASSNAPGPRPSSGSHRSPARQGLPSPPGTPHSPSYAGPK 460 470 480 490 500 510 230 240 250 260 270 FLJ001 RQATAHC-----PNSYVNNNDIYQV-TPVYRLGSNDKEIMKELMENGPVQGKP-PYPAPW : : : : . . : :. :: .:.... . . ::. : : : .: KIAA12 AVAFIHTDLPEPPPSLTVQRDHPQLKTPPSKLNGQSPGLARL----GPATGPPGPSASPT 520 530 540 550 560 570 280 FLJ001 FQKLVPA . :: KIAA12 RHTLVKKVSGVGGTTYEISV 580 590 284 residues in 1 query sequences 2210710 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:44:28 2009 done: Fri Feb 27 10:44:28 2009 Total Scan time: 0.430 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]