# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj03258.fasta.huge -Q ../query/FLJ00330.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00330, 246 aa vs ./tmplib.10216 library 2210748 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 6.7497+/-0.00784; mu= 11.6601+/- 0.528 mean_var=385.4562+/-86.636, 0's: 0 Z-trim: 2 B-trim: 0 in 0/40 Lambda= 0.065326 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00240 ( 383 res) sj07454 ( 383) 226 33.8 0.016 KIAA1306 ( 1154 res) fh05845 (1154) 171 29.5 0.93 KIAA1471 ( 1421 res) fj02383s1 (1421) 165 29.1 1.5 FLJ00252 ( 819 res) sj09394 ( 819) 149 27.1 3.4 KIAA1814 ( 1285 res) ph00952 (1285) 152 27.8 3.4 FLJ00378 ( 855 res) sj00210 ( 855) 149 27.2 3.4 KIAA0458 ( 1552 res) ef01252 (1552) 153 28.0 3.4 KIAA1768 ( 1207 res) ph00672(revised) (1207) 149 27.4 4 KIAA1375 ( 546 res) fj04426 ( 546) 142 26.1 4.5 KIAA1292 ( 595 res) hk05468(revised) ( 595) 138 25.8 6 FLJ00230 ( 414 res) sj06557 ( 414) 133 25.1 7.1 KIAA0495 ( 209 res) hg00106 ( 209) 128 24.0 7.3 KIAA0705 ( 1483 res) hg03359s1 (1483) 140 26.8 7.9 KIAA1991 ( 712 res) bf00209 ( 712) 134 25.6 8.4 KIAA1453 ( 1123 res) fh14729 (1123) 135 26.1 9.7 KIAA1531 ( 1206 res) ph00937 (1206) 135 26.1 10 FLJ00353 ( 1766 res) sh01144 (1766) 137 26.6 10 KIAA0985 ( 697 res) hj08038 ( 697) 129 25.1 12 KIAA1205 ( 1217 res) fg03511a (1217) 130 25.7 14 FLJ00084 ( 641 res) as00084 ( 641) 124 24.6 15 KIAA0807 ( 1329 res) hk04449(revised) (1329) 128 25.5 16 KIAA0775 ( 639 res) hk05255 ( 639) 123 24.5 17 FLJ00361 ( 366 res) sh04352 ( 366) 119 23.7 17 KIAA0298 ( 901 res) hf00341(revised) ( 901) 124 24.9 18 FLJ00248 ( 501 res) sj08681 ( 501) 120 24.0 18 KIAA1423 ( 616 res) fh08369(revised) ( 616) 121 24.3 19 KIAA1783 ( 1560 res) fg01285 (1560) 127 25.6 19 KIAA0176 ( 265 res) ha03941 ( 265) 115 23.0 19 FLJ00189 ( 491 res) sj02334 ( 491) 117 23.7 22 KIAA1567 ( 924 res) fh22119 ( 924) 119 24.4 25 KIAA1878 ( 453 res) pj01649 ( 453) 114 23.4 25 FLJ00280 ( 440 res) sh01728 ( 440) 113 23.2 27 KIAA0790 ( 1319 res) hk05609 (1319) 120 24.8 28 KIAA1509 ( 1365 res) fh14721 (1365) 120 24.8 28 KIAA0863 ( 1181 res) hk06535 (1181) 119 24.6 28 FLJ00201 ( 705 res) sj04110 ( 705) 115 23.8 29 KIAA1690 ( 482 res) fh27434 ( 482) 112 23.2 30 FLJ00328 ( 238 res) sj02853 ( 238) 107 22.2 30 KIAA0755 ( 1093 res) hk04532 (1093) 117 24.3 31 KIAA1924 ( 613 res) hh01339 ( 613) 113 23.5 31 KIAA0689 ( 547 res) hk03417 ( 547) 112 23.3 31 KIAA1522 ( 1044 res) fh14706(revised) (1044) 116 24.2 32 KIAA1688 ( 1094 res) fh26207 (1094) 115 24.2 35 KIAA1865 ( 723 res) fj14303 ( 723) 112 23.5 36 KIAA0434 ( 1571 res) hh02165 (1571) 117 24.6 36 KIAA1019 ( 2309 res) fg00188s1 (2309) 119 25.1 38 KIAA0633 ( 1316 res) hj02892 (1316) 115 24.3 38 KIAA1818 ( 1157 res) hg00622 (1157) 114 24.1 38 KIAA0208 ( 748 res) ha02713 ( 748) 111 23.5 38 KIAA0385 ( 1380 res) hh00802 (1380) 115 24.3 39 >>FLJ00240 ( 383 res) sj07454 (383 aa) initn: 259 init1: 226 opt: 226 Z-score: 138.7 bits: 33.8 E(): 0.016 Smith-Waterman score: 231; 45.283% identity (63.208% similar) in 106 aa overlap (104-207:30-122) 80 90 100 110 120 130 FLJ003 QPRADAAAPGPGGLQAAARRAQVSVGPRPRPRGRSHPALAFAPP--RSCFCRSHNLPQIL :.: : ::: .. : ...: .. FLJ002 LRHRLASRCPAPRLLLPPHLPQPGSQQLLPQGSLHRKGREAPPAFKQFFSSAYTLSHV- 10 20 30 40 50 140 150 160 170 180 190 FLJ003 ALPPSFAPWSPLSQLPPPRVTSSPRALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDL : : :: : ::::.::.::.:: :::::::.:::::::::..:. FLJ002 NLS---ATKLPLEAL---------RALLQGLSLNSHLSDLHLDLSSCELRSAGAQALQEQ 60 70 80 90 100 200 210 220 230 240 FLJ003 VCDAGAVSSLDLADNGEAAGEPILASSTRFPIPTLPLQLRLVRDPSHPQASAQTW . . :.::::.::: FLJ002 LGAVTCVGSLDLSDNGFDSDLLTLVPALGKNKSLKHLFLGKNFNVKAKTLEEILHKLVQL 110 120 130 140 150 160 >>KIAA1306 ( 1154 res) fh05845 (1154 aa) initn: 67 init1: 67 opt: 171 Z-score: 106.9 bits: 29.5 E(): 0.93 Smith-Waterman score: 171; 34.177% identity (47.468% similar) in 158 aa overlap (13-158:401-546) 10 20 30 40 FLJ003 PTASPRSSSQRYPEAAAPALPTSTLRGTSS-PARKGDLSGPG : . : : .: : :: .: .:. KIAA13 KMTTFQDSELSDELQAAMTGPAEVGPTTEKPSSHLPPTPRATTRQDSSLGGRARHMSSSQ 380 390 400 410 420 430 50 60 70 80 90 FLJ003 EAAGSRLLAAPGP--PSHFPQEVPRRAGRAAALPQPRADAAAPGPGGLQAAARRAQVSVG : :. . ::: : :: : : . : :: : :: : . .::.: KIAA13 ELLGD---GPPGPSSPMSRSQEYLLDEGPAPGTP-PR--EARPGRHG--HSIKRASVPPV 440 450 460 470 480 100 110 120 130 140 150 FLJ003 P-RPR---PRGRSHPALAFAPPRSCFCRSHNLPQILALP----PSFAPWSPLSQL-PPPR : .:: : : :: :.::.. . :: :. : :. : .: :: :: . KIAA13 PGKPRQVLPPGTSH----FTPPQTPTKTRPGSPQALGGPHGPAPATAKVKPTPQLLPPTE 490 500 510 520 530 160 170 180 190 200 210 FLJ003 VTSSPRALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSLDLADNGEAA :::.: KIAA13 RPMSPRSLPQSPTHRGFAYVLPQPVEGEVGPAAPGPAPPPVPTAVPTLCLPPEADAEPGR 540 550 560 570 580 590 >>KIAA1471 ( 1421 res) fj02383s1 (1421 aa) initn: 134 init1: 84 opt: 165 Z-score: 103.1 bits: 29.1 E(): 1.5 Smith-Waterman score: 165; 27.607% identity (49.080% similar) in 163 aa overlap (1-155:899-1048) 10 20 FLJ003 PTASPRSSSQRYPEAAAPALP-TSTLRGTS :.: : . : :: : . : :.:. . . KIAA14 LGLVPRSSPQHGVVSSPYVGVGPAPPVAGLPSAPPPQFSG--PELAMAVRPATTTVDSIQ 870 880 890 900 910 920 30 40 50 60 70 80 FLJ003 SPARKGDLSGPGEAAGSRLLAAPGPPSHFPQEVPRRAGRAAALPQPRADAAAPG-PGGLQ .: . :. . . : :: . : .: .: : : . : : :. KIAA14 APIPSHTAPRPNPTPAPPPPCFPVPPPQ-PLPTPYTYPAGAKQPIPAQHHFSSGIPTGFP 930 940 950 960 970 980 90 100 110 120 130 140 FLJ003 AAARRAQVSVGPRPRPRGRSHPALAFAP--PRSCFCRSHNLPQILALPPS----FAPWSP : .::.:.:. . ::. ::.: :.. . .: :.. .::. . : :: KIAA14 AP------RIGPQPQPHPQPHPSQAFGPQPPQQPLPLQH--PHL--FPPQAPGLLPPQSP 990 1000 1010 1020 1030 150 160 170 180 190 200 FLJ003 LSQLPPPRVTSSPRALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSLD : : : ..: KIAA14 YPYAPQPGVLGQPPPPLHTQLYPGPAQDPLPAHSGALPFPSPGPPQPPHPPLAYGPAPST 1040 1050 1060 1070 1080 1090 >>FLJ00252 ( 819 res) sj09394 (819 aa) initn: 164 init1: 73 opt: 149 Z-score: 96.9 bits: 27.1 E(): 3.4 Smith-Waterman score: 149; 30.827% identity (51.880% similar) in 133 aa overlap (1-124:188-314) 10 20 30 FLJ003 PTASPRSSSQRYPEAAAPALPTSTLRGTSS :. .:...:. : . .:: :: .... FLJ002 PGPQGAAPEPLGASVQRDSAQGRPCPPPQAPANQPEGASSAAPGSPVPAPPT---KASAL 160 170 180 190 200 210 40 50 60 70 80 FLJ003 PARKGDLSG--PGEAAGSRLLAAPGPPS--HFPQEVPRRAGRAAALPQPRADAAAPGPGG :...: :: :.:. : :: . : :.. : . :. : .: . :::. FLJ002 PVEQGPAEPIPPGVASGGLRPDALGPTTAHHGPRH-PPKPPRSKATERPGQEP--EGPGA 220 230 240 250 260 270 90 100 110 120 130 140 FLJ003 LQAAARRAQV--SVGPRPRPRGRSH--PALAFAP-PRSCFCRSHNLPQILALPPSFAPWS :. : : :: :::: : : . .: : : : FLJ002 TPAGERDDQSPDSVPERPRPADRRLCLPCVDASPLPGRTACPSLQEATRLIQEEFAFDGY 280 290 300 310 320 330 150 160 170 180 190 200 FLJ003 PLSQLPPPRVTSSPRALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSL FLJ002 LDNGLEALIMGEYIFALKDLTFATFCGAISEKFCDLYWDEKLLQNLFKVVNGQASPSPST 340 350 360 370 380 390 >>KIAA1814 ( 1285 res) ph00952 (1285 aa) initn: 124 init1: 56 opt: 152 Z-score: 96.9 bits: 27.8 E(): 3.4 Smith-Waterman score: 156; 30.417% identity (50.833% similar) in 240 aa overlap (13-243:1049-1259) 10 20 30 FLJ003 PTASPRSSSQRYPEAAAPA-LPTSTLRGTSSPARKGDLSG-- : ::. . . ... : :.: : :..:: KIAA18 PQFALGPMSLQANLGSVAGSSVLQSLFSSVPAAAGLVHVSSAATRLTNSHAM-GSFSGVA 1020 1030 1040 1050 1060 1070 40 50 60 70 80 90 FLJ003 PGEAAGSRLLAAPGPPSH-FPQEVPRRA--GRAAALPQPRADAAAPGPGGLQAAARRAQV : ..: :.:. .: : .: : : : :. :.: ::. . ...:: : KIAA18 GGTVGGVFNHAVPSASAHPFGARVGRGAACGSATLGPSPLQAAASASASSFQAPA----- 1080 1090 1100 1110 1120 1130 100 110 120 130 140 150 FLJ003 SVGPRPRPRGRSHPALAFAPPRSCFCRSHNLPQILALPPSFAPWSPLSQLPPPR--VTSS :: :: : : :: . . :: : .: :: : : . :::: ..:. KIAA18 SVETRPPPPPPPPPPPL--PPPAHLGRSPAGPPVLHAPP---P--PNAALPPPPTLLASN 1140 1150 1160 1170 1180 160 170 180 190 200 210 FLJ003 PR-ALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSLDLADNGEAAGEP :. :::..:: . . :: : :.:.. :. :.. . ...: KIAA18 PEPALLQSLASLPPNQAFLPPTSAASLPPANASL------------SIKLTSLPHKGARP 1190 1200 1210 1220 1230 220 230 240 FLJ003 ILASSTRFPIPTLPLQLRLVRDPSHPQASAQTW .. . :.: : : :. ::::: KIAA18 SFTVHHQ-PLPRLALAQAA---PGIPQASATGPSAVWVSLGMPPPYAAHLSGVKPR 1240 1250 1260 1270 1280 >>FLJ00378 ( 855 res) sj00210 (855 aa) initn: 108 init1: 73 opt: 149 Z-score: 96.7 bits: 27.2 E(): 3.4 Smith-Waterman score: 149; 30.827% identity (51.880% similar) in 133 aa overlap (1-124:425-551) 10 20 30 FLJ003 PTASPRSSSQRYPEAAAPALPTSTLRGTSS :. .:...:. : . .:: :: .... FLJ003 PGPQGAAPEPLGASVQRDSAQGRPCPPPQAPANQPEGASSAAPGSPVPAPPT---KASAL 400 410 420 430 440 450 40 50 60 70 80 FLJ003 PARKGDLSG--PGEAAGSRLLAAPGPPS--HFPQEVPRRAGRAAALPQPRADAAAPGPGG :...: :: :.:. : :: . : :.. : . :. : .: . :::. FLJ003 PVEQGPAEPIPPGVASGGLRPDALGPTTAHHGPRH-PPKPPRSKATERPGQEP--EGPGA 460 470 480 490 500 90 100 110 120 130 140 FLJ003 LQAAARRAQV--SVGPRPRPRGRSH--PALAFAP-PRSCFCRSHNLPQILALPPSFAPWS :. : : :: :::: : : . .: : : : FLJ003 TPAGERDDQSPDSVPERPRPADRRLCLPCVDASPLPGRTACPSLQEATRLIQEEFAFDGY 510 520 530 540 550 560 150 160 170 180 190 200 FLJ003 PLSQLPPPRVTSSPRALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSL FLJ003 LDNGLEALIMGEYIFALKDLTFATFCGAISEKFCDLYWDEKLLQNLFKVVNGQASPSPST 570 580 590 600 610 620 >>KIAA0458 ( 1552 res) ef01252 (1552 aa) initn: 145 init1: 67 opt: 153 Z-score: 96.7 bits: 28.0 E(): 3.4 Smith-Waterman score: 167; 22.984% identity (47.581% similar) in 248 aa overlap (5-241:862-1092) 10 20 30 FLJ003 PTASPRSSSQRYPEAAAPA--LPTSTLRGTSSPA :..:. . : ...:: : ..:. :: KIAA04 LHGQGPPGPHSLQAGPLLQHPGPPQPFGLPPQASQGQAPLGTSPAAAYPHTSLQ---LPA 840 850 860 870 880 40 50 60 70 80 90 FLJ003 RKGDLSGPGEAAGSRLLAAPGPPSHFPQEVPRRAGRAAALPQPRADAAAPGPGGLQAAAR .. :.. : : : .:. : . :: :.: : .: . . KIAA04 SQSALQSQ---QPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSM 890 900 910 920 930 940 100 110 120 130 140 FLJ003 RAQVSVGPRPRPRGR---SHPALAFAPPRSCFCRSHNLPQILALPPSFAPWSPLSQLPPP :.. : .: . :: : :: . . .:. ::. : ::.. . ..:::: KIAA04 NANLPPPPALKPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGL---TQSQNLPPP 950 960 970 980 990 1000 150 160 170 180 190 200 FLJ003 RVTSSPRALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCD------AGAVSSLDL .. : .: : . .. . .: : .: :: .: . KIAA04 PASHPPTGL--------HQVAPQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSAQP 1010 1020 1030 1040 1050 210 220 230 240 FLJ003 ADNGEAAGEPILASSTRFPIPTLPLQLRLVRDPSHPQASAQTW .: ::. .:... :.::. .. . . : .:.. KIAA04 PCSGAAASGGSIAGGSSCPLPTVQIKEEALDDAEEPESPPPPPRSPSPEPTVVDTPSHAS 1060 1070 1080 1090 1100 1110 KIAA04 QSARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEAIEKAKREAEQKAREEREREKEK 1120 1130 1140 1150 1160 1170 >>KIAA1768 ( 1207 res) ph00672(revised) (1207 aa) initn: 109 init1: 73 opt: 149 Z-score: 95.6 bits: 27.4 E(): 4 Smith-Waterman score: 149; 30.827% identity (51.880% similar) in 133 aa overlap (1-124:767-893) 10 20 30 FLJ003 PTASPRSSSQRYPEAAAPALPTSTLRGTSS :. .:...:. : . .:: :: .... KIAA17 PGPQGAAPEPLGASVQRDSAQGRPCPPPQAPANQPEGASSAAPGSPVPAPPT---KASAL 740 750 760 770 780 790 40 50 60 70 80 FLJ003 PARKGDLSG--PGEAAGSRLLAAPGPPS--HFPQEVPRRAGRAAALPQPRADAAAPGPGG :...: :: :.:. : :: . : :.. : . :. : .: . :::. KIAA17 PVEQGPAEPIPPGVASGGLRPDALGPTTAHHGPRH-PPKPPRSKATERPGQEP--EGPGA 800 810 820 830 840 850 90 100 110 120 130 140 FLJ003 LQAAARRAQV--SVGPRPRPRGRSH--PALAFAP-PRSCFCRSHNLPQILALPPSFAPWS :. : : :: :::: : : . .: : : : KIAA17 TPAGERDDQSPDSVPERPRPADRRLCLPCVDASPLPGRTACPSLQEATRLIQEEFAFDGY 860 870 880 890 900 910 150 160 170 180 190 200 FLJ003 PLSQLPPPRVTSSPRALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSL KIAA17 LDNGLEALIMGEYIFALKDLTFATFCGAISEKFCDLYWDEKLLQNLFKVVNGQASPSPST 920 930 940 950 960 970 >>KIAA1375 ( 546 res) fj04426 (546 aa) initn: 146 init1: 54 opt: 142 Z-score: 94.7 bits: 26.1 E(): 4.5 Smith-Waterman score: 146; 28.025% identity (48.408% similar) in 157 aa overlap (14-156:394-545) 10 20 30 40 FLJ003 PTASPRSSSQRYPEAAAPALPTSTLRGTSSPARKGDLSGPGEA : .::..:: . . :::: . : : KIAA13 RFQNKCSDIVFARKTERDELLKDLQQSIAREPSAPSIPTPAYQ--SSPAGGHAPTPPTPA 370 380 390 400 410 420 50 60 70 80 90 100 FLJ003 AGSRLLAAPGPPSHFPQEV-PRRAGRAAALPQPR-ADAAAPGPGGLQAAARRAQVSVGPR . . : ::.. : : : . .:. :.: : .:::.:. ..: :.. :: KIAA13 PRTMPPTKPQPPARPPPPVLPANRAPSATAPSPVGAGTAAPAPSQTPGSAPPPQAQ-GP- 430 440 450 460 470 110 120 130 140 FLJ003 PRPRGRSHPALAFAP------PRSCFCRSHNLPQILALPPSFAPWSPLSQLP------PP : : ..:. : : . . : . :. ::. : : : :: KIAA13 PYPTYPGYPGYCQMPMPMGYNPYAYGQYNMPYPPVYHQSPGQAPY-PGPQQPSYPFPQPP 480 490 500 510 520 530 150 160 170 180 190 200 FLJ003 RVTSSPRALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSLDLADNGEA . . :. KIAA13 QQSYYPQQ 540 >>KIAA1292 ( 595 res) hk05468(revised) (595 aa) initn: 80 init1: 61 opt: 138 Z-score: 92.4 bits: 25.8 E(): 6 Smith-Waterman score: 138; 31.690% identity (52.113% similar) in 142 aa overlap (15-152:449-578) 10 20 30 40 FLJ003 PTASPRSSSQRYPEAAAPALPTSTLRGTSSPARKGDLSGPGEAA : ::: :: .:: .: :. . : KIAA12 QASVLSEGPRGPALRYGSRDDLVAGPGFGGARNPALQTSLSSLSSSVSRAPRTSSSSLQA 420 430 440 450 460 470 50 60 70 80 90 100 FLJ003 GSRLLAAPGP-PSHFPQEVPRRAGRAAALPQPRADAAAPGPGGLQAAARRAQVSVGPRPR . :::: :: .. : : : ::.: . .:. .: .:.: .... :.: KIAA12 DQASSNAPGPRPSSGSHRSPARQG----LPSPPGTPHSPSYAGPKAVAF-IHTDL-PEPP 480 490 500 510 520 530 110 120 130 140 150 160 FLJ003 PR---GRSHPALAFAPPRSCFCRSHNLPQILALPPSFAPWSPLSQLPPPRVTSSPRALLD : :.:: : .:: . .: : . : :. .: .: .. : : : KIAA12 PSLTVQRDHPQLK-TPPSKLNGQS---PGLARLGPATGPPGPSAS--PTRHTLVKKVSGV 540 550 560 570 580 170 180 190 200 210 220 FLJ003 GLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSLDLADNGEAAGEPILASSTR KIAA12 GGTTYEISV 590 246 residues in 1 query sequences 2210748 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:52 2009 done: Fri Feb 27 10:51:52 2009 Total Scan time: 0.420 Total Display time: 0.050 Function used was FASTA [version 34.26.5 April 26, 2007]