# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj03258.fasta.nr -Q ../query/FLJ00330.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00330, 246 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7817419 sequences Expectation_n fit: rho(ln(x))= 6.1018+/-0.000202; mu= 5.7687+/- 0.011 mean_var=126.0952+/-23.790, 0's: 28 Z-trim: 44 B-trim: 0 in 0/68 Lambda= 0.114215 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748530|dbj|BAC03402.1| FLJ00330 protein [Homo ( 246) 1681 287.2 1.6e-75 gi|114663154|ref|XP_523395.2| PREDICTED: RGD, leuc (1514) 352 69.0 4.8e-09 gi|172045901|sp|Q6F5E8.2|LR16C_HUMAN RecName: Full (1435) 350 68.7 5.9e-09 gi|49614757|dbj|BAD26751.1| RGD, leucine-rich repe (1475) 350 68.7 6e-09 gi|209512813|gb|ACI49710.1| CARMIL2b [Homo sapiens (1372) 341 67.2 1.6e-08 gi|194208712|ref|XP_001915893.1| PREDICTED: simila (1508) 316 63.1 2.9e-07 gi|172045698|sp|Q3V3V9.2|LR16C_MOUSE RecName: Full (1296) 303 60.9 1.2e-06 gi|149460221|ref|XP_001520435.1| PREDICTED: simila ( 728) 286 57.8 5.5e-06 gi|118096150|ref|XP_414033.2| PREDICTED: hypotheti ( 736) 275 56.0 1.9e-05 gi|126632719|emb|CAM56717.1| novel protein [Danio ( 594) 240 50.2 0.00091 gi|189531534|ref|XP_695141.3| PREDICTED: hypotheti ( 932) 240 50.4 0.0012 gi|119586527|gb|EAW66123.1| hCG1812121 [Homo sapie ( 378) 226 47.7 0.0033 gi|18676682|dbj|BAB84993.1| FLJ00240 protein [Homo ( 383) 226 47.7 0.0033 gi|73962643|ref|XP_547741.2| PREDICTED: similar to (1154) 230 48.8 0.0045 gi|149063959|gb|EDM14229.1| rCG23421, isoform CRA_ ( 546) 225 47.7 0.0047 gi|47847484|dbj|BAD21414.1| mFLJ00240 protein [Mus ( 769) 225 47.8 0.006 gi|148704351|gb|EDL36298.1| mCG141016 [Mus musculu ( 898) 225 47.9 0.0067 gi|74201795|dbj|BAE28502.1| unnamed protein produc ( 898) 225 47.9 0.0067 gi|119902036|ref|XP_595353.3| PREDICTED: similar t (1372) 226 48.2 0.008 gi|114652244|ref|XP_509860.2| PREDICTED: hypotheti (1372) 226 48.2 0.008 gi|172045774|sp|Q8ND23.2|LR16B_HUMAN RecName: Full (1372) 226 48.2 0.008 gi|172045960|sp|Q5XHY1.2|LR16B_RAT Leucine-rich re (1373) 225 48.1 0.009 gi|172044636|sp|Q3UFQ8.2|LR16B_MOUSE RecName: Full (1375) 225 48.1 0.009 >>gi|21748530|dbj|BAC03402.1| FLJ00330 protein [Homo sap (246 aa) initn: 1681 init1: 1681 opt: 1681 Z-score: 1511.9 bits: 287.2 E(): 1.6e-75 Smith-Waterman score: 1681; 100.000% identity (100.000% similar) in 246 aa overlap (1-246:1-246) 10 20 30 40 50 60 FLJ003 PTASPRSSSQRYPEAAAPALPTSTLRGTSSPARKGDLSGPGEAAGSRLLAAPGPPSHFPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 PTASPRSSSQRYPEAAAPALPTSTLRGTSSPARKGDLSGPGEAAGSRLLAAPGPPSHFPQ 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 EVPRRAGRAAALPQPRADAAAPGPGGLQAAARRAQVSVGPRPRPRGRSHPALAFAPPRSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 EVPRRAGRAAALPQPRADAAAPGPGGLQAAARRAQVSVGPRPRPRGRSHPALAFAPPRSC 70 80 90 100 110 120 130 140 150 160 170 180 FLJ003 FCRSHNLPQILALPPSFAPWSPLSQLPPPRVTSSPRALLDGLALNTHLRDLHLDLSACEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 FCRSHNLPQILALPPSFAPWSPLSQLPPPRVTSSPRALLDGLALNTHLRDLHLDLSACEL 130 140 150 160 170 180 190 200 210 220 230 240 FLJ003 RSAGAQVIQDLVCDAGAVSSLDLADNGEAAGEPILASSTRFPIPTLPLQLRLVRDPSHPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 RSAGAQVIQDLVCDAGAVSSLDLADNGEAAGEPILASSTRFPIPTLPLQLRLVRDPSHPQ 190 200 210 220 230 240 FLJ003 ASAQTW :::::: gi|217 ASAQTW >>gi|114663154|ref|XP_523395.2| PREDICTED: RGD, leucine- (1514 aa) initn: 334 init1: 334 opt: 352 Z-score: 318.5 bits: 69.0 E(): 4.8e-09 Smith-Waterman score: 352; 55.634% identity (61.972% similar) in 142 aa overlap (76-207:524-659) 50 60 70 80 90 100 FLJ003 SRLLAAPGPPSHFPQEVPRRAGRAAALPQPRADAAAPGPGGLQAAARRAQVSVGPR---P ::: : : ::: : :. :. :. gi|114 PNVLSFLNLAGTDTALDTVRGCSVGGWMTGRADWRA-GRGGLGPPASVAN-SLPPQLFAA 500 510 520 530 540 550 110 120 130 140 150 FLJ003 RPRGRSHPALAFAPPRSCFCR--SHNLPQILALPPSFA-PWSPLS----QLPPPRVTSSP :: . :. : : :. : : : : : :. .::: . gi|114 VSRGCCTSLTHLDASRNVFSRTKSRAAPAALQLFLSRARTLRHLGLAGCKLPPDAL---- 560 570 580 590 600 160 170 180 190 200 210 FLJ003 RALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSLDLADNGEAAGEPIL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSLDLADNGFGSDMVTL 610 620 630 640 650 660 220 230 240 FLJ003 ASSTRFPIPTLPLQLRLVRDPSHPQASAQTW gi|114 VLAIGRSRSLRHVALGRNFNVRCKETLDDVLHRIVQLMQDDDCPLQSLSVAESRLKLGAS 670 680 690 700 710 720 >>gi|172045901|sp|Q6F5E8.2|LR16C_HUMAN RecName: Full=Leu (1435 aa) initn: 334 init1: 334 opt: 350 Z-score: 317.1 bits: 68.7 E(): 5.9e-09 Smith-Waterman score: 350; 55.634% identity (61.972% similar) in 142 aa overlap (76-207:396-531) 50 60 70 80 90 100 FLJ003 SRLLAAPGPPSHFPQEVPRRAGRAAALPQPRADAAAPGPGGLQAAARRAQVSVGPR---P ::: : : ::: : :. :. :. gi|172 PNVLSFLNLAGTDTALDTVRGCSVGGWMTGRADWRA-GRGGLGPPAGVAN-SLPPQLFAA 370 380 390 400 410 420 110 120 130 140 150 FLJ003 RPRGRSHPALAFAPPRSCFCR--SHNLPQILALPPSFA-PWSPLS----QLPPPRVTSSP :: . :. : : :. : : : : : :. .::: . gi|172 VSRGCCTSLTHLDASRNVFSRTKSRAAPAALQLFLSRARTLRHLGLAGCKLPPDAL---- 430 440 450 460 470 160 170 180 190 200 210 FLJ003 RALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSLDLADNGEAAGEPIL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 RALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSLDLADNGFGSDMVTL 480 490 500 510 520 530 220 230 240 FLJ003 ASSTRFPIPTLPLQLRLVRDPSHPQASAQTW gi|172 VLAIGRSRSLRHVALGRNFNVRCKETLDDVLHRIVQLMQDDDCPLQSLSVAESRLKLGAS 540 550 560 570 580 590 >>gi|49614757|dbj|BAD26751.1| RGD, leucine-rich repeat, (1475 aa) initn: 334 init1: 334 opt: 350 Z-score: 316.9 bits: 68.7 E(): 6e-09 Smith-Waterman score: 350; 55.634% identity (61.972% similar) in 142 aa overlap (76-207:436-571) 50 60 70 80 90 100 FLJ003 SRLLAAPGPPSHFPQEVPRRAGRAAALPQPRADAAAPGPGGLQAAARRAQVSVGPR---P ::: : : ::: : :. :. :. gi|496 PNVLSFLNLAGTDTALDTVRGCSVGGWMTGRADWRA-GRGGLGPPAGVAN-SLPPQLFAA 410 420 430 440 450 460 110 120 130 140 150 FLJ003 RPRGRSHPALAFAPPRSCFCR--SHNLPQILALPPSFA-PWSPLS----QLPPPRVTSSP :: . :. : : :. : : : : : :. .::: . gi|496 VSRGCCTSLTHLDASRNVFSRTKSRAAPAALQLFLSRARTLRHLGLAGCKLPPDAL---- 470 480 490 500 510 160 170 180 190 200 210 FLJ003 RALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSLDLADNGEAAGEPIL :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|496 RALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSLDLADNGFGSDMVTL 520 530 540 550 560 570 220 230 240 FLJ003 ASSTRFPIPTLPLQLRLVRDPSHPQASAQTW gi|496 VLAIGRSRSLRHVALGRNFNVRCKETLDDVLHRIVQLMQDDDCPLQSLSVAESRLKLGAS 580 590 600 610 620 630 >>gi|209512813|gb|ACI49710.1| CARMIL2b [Homo sapiens] (1372 aa) initn: 334 init1: 334 opt: 341 Z-score: 309.3 bits: 67.2 E(): 1.6e-08 Smith-Waterman score: 341; 87.302% identity (90.476% similar) in 63 aa overlap (145-207:437-495) 120 130 140 150 160 170 FLJ003 APPRSCFCRSHNLPQILALPPSFAPWSPLSQLPPPRVTSSPRALLDGLALNTHLRDLHLD .::: . ::::::::::::::::::: gi|209 SRTKSRAAPAALQLFLSRARTLRHLGLAGCKLPPDAL----RALLDGLALNTHLRDLHLD 410 420 430 440 450 460 180 190 200 210 220 230 FLJ003 LSACELRSAGAQVIQDLVCDAGAVSSLDLADNGEAAGEPILASSTRFPIPTLPLQLRLVR ::::::::::::::::::::::::::::::::: gi|209 LSACELRSAGAQVIQDLVCDAGAVSSLDLADNGFGSDMVTLVLAIGRSRSLRHVALGRNF 470 480 490 500 510 520 240 FLJ003 DPSHPQASAQTW gi|209 NVRCKETLDDVLHRIVQLMQDDDCPLQSLSVAESRLKLGASVLLRALATNPNLTALDISG 530 540 550 560 570 580 >>gi|194208712|ref|XP_001915893.1| PREDICTED: similar to (1508 aa) initn: 316 init1: 316 opt: 316 Z-score: 286.5 bits: 63.1 E(): 2.9e-07 Smith-Waterman score: 316; 94.231% identity (98.077% similar) in 52 aa overlap (156-207:547-598) 130 140 150 160 170 180 FLJ003 NLPQILALPPSFAPWSPLSQLPPPRVTSSPRALLDGLALNTHLRDLHLDLSACELRSAGA ::::.:::::::. :::::::::::::::: gi|194 APAALQLFLSRAGTLRHLGLAGCKLPADALRALLEGLALNTHMGDLHLDLSACELRSAGA 520 530 540 550 560 570 190 200 210 220 230 240 FLJ003 QVIQDLVCDAGAVSSLDLADNGEAAGEPILASSTRFPIPTLPLQLRLVRDPSHPQASAQT :::::::::::::::::::::: gi|194 QVIQDLVCDAGAVSSLDLADNGFGSDMVTLVLAIGRSRSLRHVALGRNFNVRCKETLDDV 580 590 600 610 620 630 >>gi|172045698|sp|Q3V3V9.2|LR16C_MOUSE RecName: Full=Leu (1296 aa) initn: 322 init1: 296 opt: 303 Z-score: 275.7 bits: 60.9 E(): 1.2e-06 Smith-Waterman score: 303; 76.190% identity (90.476% similar) in 63 aa overlap (145-207:407-465) 120 130 140 150 160 170 FLJ003 APPRSCFCRSHNLPQILALPPSFAPWSPLSQLPPPRVTSSPRALLDGLALNTHLRDLHLD .::: . ::::.::::::...::::: gi|172 SRMKSQAAPAALQRFLGGTRMLRHLGLAGCKLPPEAL----RALLEGLALNTQIHDLHLD 380 390 400 410 420 430 180 190 200 210 220 230 FLJ003 LSACELRSAGAQVIQDLVCDAGAVSSLDLADNGEAAGEPILASSTRFPIPTLPLQLRLVR ::::::::.::::::::::::::.:::::.::: gi|172 LSACELRSVGAQVIQDLVCDAGALSSLDLSDNGFGSDMVTLVLAIGRSRSLKHVALGRNF 440 450 460 470 480 490 240 FLJ003 DPSHPQASAQTW gi|172 NVRCKETLDDVLHRIAQLMQDDDCPLQSLSVAESRLKQGASILIRALGTNPKLTALDISG 500 510 520 530 540 550 >>gi|149460221|ref|XP_001520435.1| PREDICTED: similar to (728 aa) initn: 257 init1: 257 opt: 286 Z-score: 263.7 bits: 57.8 E(): 5.5e-06 Smith-Waterman score: 287; 36.816% identity (57.214% similar) in 201 aa overlap (36-207:186-370) 10 20 30 40 50 FLJ003 RSSSQRYPEAAAPALPTSTLRGTSSPARKGDLSG-PG----EAAGSR--LLAAPGPPSHF :::: :: : .:: .:. :. .:. gi|149 SRTGMSTRGMSALCQALLTNPAFASSLSHLDLSGNPGALSTEDSGSLHCFLSRPNAMTHL 160 170 180 190 200 210 60 70 80 90 100 110 FLJ003 PQEVPRRAGRAAALPQPRADAAAPGP--GGLQAAARRAQVSVGPRPRPRGRSHPALA--- .: :: :... :: ::. . .... : : :.: : gi|149 NL-----SGTDCAL-----DTVSVGPLLGGVFWGQTALDLGLPPGELPN--SYPWLCCPK 220 230 240 250 260 120 130 140 150 FLJ003 -FAPPRSCFCRS------------HNLPQILALPPS--FAPWSPLSQL--PPPRVTSSPR :. .: : :.. . ::: ..: :. .: :: .:: gi|149 LFGALSRGYCTSLSYLDASRNVFSHTFSYAFPSPPSSLLSPSFPFPSLHSSPP----NPR 270 280 290 300 310 160 170 180 190 200 210 FLJ003 ALLDGLALNTHLRDLHLDLSACELRSAGAQVIQDLVCDAGAVSSLDLADNGEAAGEPILA :.:.:::.::.. :.:::::.::::::::::::::. ::..:..:.:.::: gi|149 AVLQGLAFNTQISDVHLDLSSCELRSAGAQVIQDLIFDANSVTTLELSDNGFDSDMVTLV 320 330 340 350 360 370 220 230 240 FLJ003 SSTRFPIPTLPLQLRLVRDPSHPQASAQTW gi|149 LAIGRSKSIRHVSLGRNFNIKSKESLDDVLHRIVQLTQDDDCPLQSLSVAESRLKLGTHV 380 390 400 410 420 430 >>gi|118096150|ref|XP_414033.2| PREDICTED: hypothetical (736 aa) initn: 284 init1: 262 opt: 275 Z-score: 253.9 bits: 56.0 E(): 1.9e-05 Smith-Waterman score: 275; 67.188% identity (85.938% similar) in 64 aa overlap (144-207:398-457) 120 130 140 150 160 170 FLJ003 FAPPRSCFCRSHNLPQILALPPSFAPWSPLSQLPPPRVTSSPRALLDGLALNTHLRDLHL ..::: : ::.:.::: :.:. :::: gi|118 YSHRRVKTISPSVKQFFSQARALRHISMAGTKLPPDAV----RAVLQGLAYNSHISDLHL 370 380 390 400 410 420 180 190 200 210 220 230 FLJ003 DLSACELRSAGAQVIQDLVCDAGAVSSLDLADNGEAAGEPILASSTRFPIPTLPLQLRLV :::.::::::::::::::. ::.:.:.:::.::: gi|118 DLSSCELRSAGAQVIQDLIPDASAISDLDLSDNGGHLEKSDGELPNSFEQRVHVMLHRMG 430 440 450 460 470 480 240 FLJ003 RDPSHPQASAQTW gi|118 VTKGLVTESKKQQSKDSEIKKAGSDGDIVDSSADSPPSLKARTHSVSTDASLRGPSEPSP 490 500 510 520 530 540 >>gi|126632719|emb|CAM56717.1| novel protein [Danio reri (594 aa) initn: 231 init1: 231 opt: 240 Z-score: 223.9 bits: 50.2 E(): 0.00091 Smith-Waterman score: 240; 60.938% identity (81.250% similar) in 64 aa overlap (144-207:373-432) 120 130 140 150 160 170 FLJ003 FAPPRSCFCRSHNLPQILALPPSFAPWSPLSQLPPPRVTSSPRALLDGLALNTHLRDLHL ..::: . : ::.::: :::: .:.: gi|126 FSLRKVREVTRSVRDFFSKSTVLKYVGFSGTKLPPEAL----RLLLQGLATNTHLSELEL 350 360 370 380 390 180 190 200 210 220 230 FLJ003 DLSACELRSAGAQVIQDLVCDAGAVSSLDLADNGEAAGEPILASSTRFPIPTLPLQLRLV :.:.::::::::::::. . .: :.:::::.::: gi|126 DISSCELRSAGAQVIQEHIFEAKAISSLDLSDNGFESNMVTLILSIGRSHSIKHLSIGRN 400 410 420 430 440 450 240 FLJ003 RDPSHPQASAQTW gi|126 FAMKSRALTDVLHRLVQLIQEEECPLESLSVCDSKLKTGTTILINSLGCNASLSKIDISG 460 470 480 490 500 510 246 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 15:55:22 2009 done: Fri Feb 27 16:00:38 2009 Total Scan time: 736.850 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]