# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj03274.fasta.huge -Q ../query/FLJ00197.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00197, 178 aa vs ./tmplib.10216 library 2210816 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 6.2965+/-0.00548; mu= 7.9647+/- 0.371 mean_var=179.3894+/-39.726, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.095758 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00066 ( 162 res) as00066 ( 162) 104 24.5 3 KIAA0099 ( 1175 res) hk05583 (1175) 112 26.7 4.6 KIAA1228 ( 843 res) fh05620s1 ( 843) 105 25.6 7.4 KIAA0842 ( 1020 res) hk05077 (1020) 106 25.8 7.5 KIAA1759 ( 983 res) fh22011s1 ( 983) 104 25.5 8.9 KIAA1292 ( 595 res) hk05468(revised) ( 595) 98 24.4 12 KIAA1887 ( 967 res) fk02232 ( 967) 100 25.0 13 KIAA1983 ( 418 res) fk09737(revised) ( 418) 93 23.5 15 FLJ00139 ( 585 res) sh03241 ( 585) 95 24.0 15 KIAA0847 ( 645 res) hk05395 ( 645) 95 24.0 16 KIAA1332 ( 651 res) fh15405 ( 651) 95 24.0 16 KIAA1535 ( 711 res) fk12792 ( 711) 95 24.1 17 KIAA0705 ( 1483 res) hg03359s1 (1483) 99 25.1 18 KIAA1065 ( 665 res) hj05094 ( 665) 93 23.8 20 FLJ00361 ( 366 res) sh04352 ( 366) 89 22.9 21 KIAA1068 ( 354 res) hj05437 ( 354) 88 22.7 22 KIAA1673 ( 712 res) fg00690 ( 712) 91 23.5 25 KIAA1599 ( 608 res) fj09928 ( 608) 90 23.3 25 KIAA1053 ( 508 res) hh05049 ( 508) 88 22.9 28 KIAA0482 ( 1332 res) hj01880 (1332) 94 24.3 28 KIAA0802 ( 1578 res) hh07536 (1578) 95 24.6 28 FLJ00018 ( 1430 res) as00018 (1430) 94 24.4 29 KIAA0269 ( 567 res) ha06751 ( 567) 88 23.0 29 FLJ00153 ( 497 res) sh06127 ( 497) 87 22.8 30 KIAA2009 ( 501 res) fj05611 ( 501) 87 22.8 30 KIAA1357 ( 836 res) fj01906 ( 836) 90 23.5 31 KIAA1224 ( 997 res) fh02652 ( 997) 91 23.7 31 KIAA0613 ( 734 res) hg01088b ( 734) 89 23.3 31 KIAA0374 ( 584 res) hh00327 ( 584) 87 22.9 33 KIAA0765 ( 952 res) hk04803s1 ( 952) 90 23.6 33 FLJ00084 ( 641 res) as00084 ( 641) 87 22.9 35 KIAA0212 ( 666 res) ha02602 ( 666) 87 23.0 36 KIAA1135 ( 789 res) hj05037 ( 789) 88 23.2 36 KIAA0828 ( 619 res) hh04230 ( 619) 86 22.8 38 KIAA0497 ( 239 res) hg00150 ( 239) 80 21.4 38 KIAA1539 ( 543 res) fg02356 ( 543) 85 22.6 38 KIAA1614 ( 1208 res) fj12973 (1208) 89 23.6 42 KIAA0369 ( 794 res) hh00177 ( 794) 86 22.9 44 KIAA0969 ( 1091 res) hj06525 (1091) 88 23.4 44 KIAA1527 ( 801 res) fj06850s1 ( 801) 86 22.9 44 KIAA1787 ( 1564 res) fh19054 (1564) 90 23.9 45 FLJ00155 ( 612 res) sh06465 ( 612) 84 22.5 45 FLJ00302 ( 853 res) sh04964 ( 853) 86 23.0 45 KIAA1531 ( 1206 res) ph00937 (1206) 88 23.4 46 KIAA1681 ( 1236 res) fh23697 (1236) 88 23.4 47 KIAA1637 ( 479 res) fj00747s1 ( 479) 82 22.1 47 KIAA1813 ( 673 res) ph00819b ( 673) 84 22.5 48 KIAA1828 ( 496 res) ha06249 ( 496) 82 22.1 48 FLJ00072 ( 204 res) as00072 ( 204) 76 20.8 50 KIAA0865 ( 1900 res) hk06640y1 (1900) 90 24.0 50 >>FLJ00066 ( 162 res) as00066 (162 aa) initn: 64 init1: 64 opt: 104 Z-score: 97.8 bits: 24.5 E(): 3 Smith-Waterman score: 104; 37.288% identity (64.407% similar) in 59 aa overlap (118-176:75-125) 90 100 110 120 130 140 FLJ001 NRYSVDTSASTFNHRGSLHPSSSLYCKRQNSGDSHLGGGPAATAGGPRTSPMSSGGPSAP ::.:. :::: .: : .::. :. :. : FLJ000 FANPEDQFLGFQASAFLLHVLKPPQGAATPSGSSQ--GGPAMFSGLP-VSPLPSSYPQNP 50 60 70 80 90 100 150 160 170 FLJ001 GLRPPASSPKRNTTSLEGNRCGNVMHASASH .. :: :: .: . :...:.:. FLJ000 SFIPPPSSCVSCST-----HTGEALHSSSIFQPWHRTDGKGRAGFSASGTRGRPHLTPPS 110 120 130 140 150 >>KIAA0099 ( 1175 res) hk05583 (1175 aa) initn: 101 init1: 71 opt: 112 Z-score: 94.4 bits: 26.7 E(): 4.6 Smith-Waterman score: 112; 27.551% identity (58.163% similar) in 98 aa overlap (86-177:678-775) 60 70 80 90 100 110 FLJ001 SASEKVQEKEEGRMESVKTVTTEEYLVNPVGMNRYSVDTSASTFNHRGSLHPSSSLYCKR :.. ....... ..: :: ::.:: . KIAA00 FSQGSAQPANTSLGFGSSSSLGATLGSALGGFGTAVANSNTGSGSRRDSLTGSSDLYKRT 650 660 670 680 690 700 120 130 140 150 160 FLJ001 QNS----GDSHLGGGPAATAGGPRTSPMSSGGPSAPGLRPPASSPKRNTTSLE--GNRCG ..: : : .: ... :: :. : ::. ::. : . ...::. : : KIAA00 SSSLTPIGHSFYNGLSFSSSPGPVGMPLPSQGPGHSQTPPPSLSSHGSSSSLNLGGLTNG 710 720 730 740 750 760 170 FLJ001 NVMHASASH . . ::. KIAA00 SGRYISAAPGAEAKYRSASSASSLFSPSSTLFSSSRLRYGMSDVMPSGRSRLLEDFRNNR 770 780 790 800 810 820 >>KIAA1228 ( 843 res) fh05620s1 (843 aa) initn: 112 init1: 74 opt: 105 Z-score: 90.8 bits: 25.6 E(): 7.4 Smith-Waterman score: 105; 31.343% identity (62.687% similar) in 67 aa overlap (115-178:604-668) 90 100 110 120 130 140 FLJ001 VGMNRYSVDTSASTFNHRGSLHPSSSLYCKRQNSGDSHLGGGPAATAGGPRTSPMSS--G :..: ::..:.:. :: :.: . : KIAA12 LRVLHLEKRERPPDHQHSAQVKRPSVSKEGRKTSIKSHMSGSPG--PGGSNTAPSTPVIG 580 590 600 610 620 630 150 160 170 FLJ001 GPSAPGLRPPASSPKRNTTSLEG-NRCGNVMHASASH : . ::.. :. :. . .:. .: .. . :: .: KIAA12 GSDKPGMEEKAQPPEAGPQGLHDLGRSSSSLLASPGHISVKEPTPSIASDISLPIATQEL 640 650 660 670 680 690 KIAA12 RQRLRQLENGTTLGQSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDGSDPYVRMYL 700 710 720 730 740 750 >>KIAA0842 ( 1020 res) hk05077 (1020 aa) initn: 55 init1: 55 opt: 106 Z-score: 90.6 bits: 25.8 E(): 7.5 Smith-Waterman score: 106; 28.000% identity (55.000% similar) in 100 aa overlap (62-156:294-392) 40 50 60 70 80 90 FLJ001 FLAKLCRSLLCDDLFSHQPFPRGCSASEKVQEKEEGRMESVKTVTTEEYLVNPVGMNRYS :::::.. . . :: .. . .. . KIAA08 RSPTQRQNPFNEEPAETVSSSDTTPVHTTSQEKEEAQALDPPDACTELEVIRVTKKKKIG 270 280 290 300 310 320 100 110 120 130 140 FLJ001 VDTSASTFNHRGSLHPSSSLY-CKRQNSGDSHLGGGPAATAGGPRT---SPMSSG-GPSA .. . .. . :::. : : .:..:::. .:.:. .: : ::. : :::. KIAA08 KKKKSRSDEEASPLHPACSQKKCAKQGDGDSR-NGSPSLGRDSPDTMLASPQEEGEGPSS 330 340 350 360 370 380 150 160 170 FLJ001 PGLRPPASSPKRNTTSLEGNRCGNVMHASASH : : KIAA08 TTESSERSEPGLLIPEMKDTSMERLGQPLSKVIDQLNGQLDPSTWCSRAEPPDQSFRTGS 390 400 410 420 430 440 >>KIAA1759 ( 983 res) fh22011s1 (983 aa) initn: 118 init1: 64 opt: 104 Z-score: 89.3 bits: 25.5 E(): 8.9 Smith-Waterman score: 104; 36.111% identity (52.778% similar) in 72 aa overlap (86-156:490-555) 60 70 80 90 100 110 FLJ001 SASEKVQEKEEGRMESVKTVTTEEYLVNPVGMNRYSVDTSASTFNHRGSLHPSSSLYCKR : . :::.:. : : .:. .. KIAA17 AADKFLSLIPRCCRHHAPSPPRPEHASWARGPGSPSVDSSSVMTVPRPSTPSRLALFLRQ 460 470 480 490 500 510 120 130 140 150 160 170 FLJ001 QNSGDSHLGGGPAATAGGPRTSPMSSGGPSAPGLRP-PASSPKRNTTSLEGNRCGNVMHA :. : :. . ::: . : .:: :: :: :: :: : KIAA17 QSLGGSE-SPGPAPCSPGLSASPASS-----PGRRPTPAEEPGELEDNYLEYLREARRGV 520 530 540 550 560 570 FLJ001 SASH KIAA17 DRCVRACRTWSAPYDGERPSPEPSPFGSRTKKRSLLPEEDRNNVGEGEEEELGRRGRAGG 580 590 600 610 620 630 >>KIAA1292 ( 595 res) hk05468(revised) (595 aa) initn: 161 init1: 77 opt: 98 Z-score: 87.2 bits: 24.4 E(): 12 Smith-Waterman score: 98; 26.154% identity (54.615% similar) in 130 aa overlap (35-157:393-519) 10 20 30 40 50 60 FLJ001 FPVSASFDGKQHLRSLPVVNSIGYVLRFLAKLCRSLLCDDLFSHQPF---PRGCSASEKV .: :: :.::. . : . : .. KIAA12 PREPSPVRYDNLSRTIMASIQERKDREERERLLRSQ-ADSLFGDSGVYDAPSSYSLQQAS 370 380 390 400 410 420 70 80 90 100 110 FLJ001 QEKEEGRMESVKTVTTEEYLVNP-VGMNRY-SVDTSASTFNHRGSLHPSSSLYCKRQNSG .: : ... . .. ...: : : ...:: :... : : .: . ... KIAA12 VLSEGPRGPALRYGSRDDLVAGPGFGGARNPALQTSLSSLSSSVSRAPRTSSSSLQADQA 430 440 450 460 470 480 120 130 140 150 160 170 FLJ001 DSHLGGGPAATAGGPRTSPMSSGGPSAPGL--RPPASSPKRNTTSLEGNRCGNVMHASAS .:. . :: ..:. : :: .: :: :: : ..:: KIAA12 SSN-APGPRPSSGSHR-SPARQGLPSPPGTPHSPSYAGPKAVAFIHTDLPEPPPSLTVQR 490 500 510 520 530 FLJ001 H KIAA12 DHPQLKTPPSKLNGQSPGLARLGPATGPPGPSASPTRHTLVKKVSGVGGTTYEISV 540 550 560 570 580 590 >>KIAA1887 ( 967 res) fk02232 (967 aa) initn: 118 init1: 85 opt: 100 Z-score: 86.4 bits: 25.0 E(): 13 Smith-Waterman score: 100; 46.154% identity (58.974% similar) in 39 aa overlap (118-156:599-634) 90 100 110 120 130 140 FLJ001 NRYSVDTSASTFNHRGSLHPSSSLYCKRQNSGDSHLGGGPAATAGGPRTSPMSSGGPSAP .:: : : : :::: :.:. : .: KIAA18 PPPSDLLPPPSAPPSNLLASFLPLLALGPTAGD---GEGSAEGAGGPSGEPFSGLGDLSP 570 580 590 600 610 620 150 160 170 FLJ001 GLRPPASSPKRNTTSLEGNRCGNVMHASASH : :: :.: KIAA18 LLFPPLSAPPTLIALNSALLAATLDPPSGTPPQPCVLSAPQPGPPTSSVTTATTDPGASS 630 640 650 660 670 680 >>KIAA1983 ( 418 res) fk09737(revised) (418 aa) initn: 98 init1: 66 opt: 93 Z-score: 85.1 bits: 23.5 E(): 15 Smith-Waterman score: 98; 25.676% identity (58.108% similar) in 74 aa overlap (90-156:218-291) 60 70 80 90 100 110 FLJ001 KVQEKEEGRMESVKTVTTEEYLVNPVGMNRYSVDTSASTFNHRGSLHPSSSLYCKRQNSG :.. .. .... .: :... . .: KIAA19 RGDKYPNDTGHEKSENMVKAGTCCATCKEFYQMKQTVLQLKQKIALLPNNAADLGKYITG 190 200 210 220 230 240 120 130 140 150 160 170 FLJ001 D------SHLGGGPAATAG-GPRTSPMSSGGPSAPGLRPPASSPKRNTTSLEGNRCGNVM : ..: : :. .: :: :: .:.:. ::. : ..: KIAA19 DKVLASNTYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLS 250 260 270 280 290 300 FLJ001 HASASH KIAA19 HIKQGRRGPVGPPGAPGRDGSKGERGAPGPRGSPGPPGSFDFLLLMLADIRNDITELQEK 310 320 330 340 350 360 >>FLJ00139 ( 585 res) sh03241 (585 aa) initn: 103 init1: 51 opt: 95 Z-score: 85.0 bits: 24.0 E(): 15 Smith-Waterman score: 95; 27.500% identity (52.500% similar) in 120 aa overlap (50-167:317-432) 20 30 40 50 60 70 FLJ001 LPVVNSIGYVLRFLAKLCRSLLCDDLFSHQPFPRGCSASEKVQEKEEGR-MESVKTVTTE : : . ::. .:. . .: :: . : FLJ001 QKAQEANKARPSAWEPAAGNSPARASVPAAPNPAATSAT-SVHVRSPARPSESRLAPTPT 290 300 310 320 330 340 80 90 100 110 120 130 FLJ001 EYLVNPVGMNRYSVD-TSASTFNHRGSLHPSSSLYCKRQNSGDSHLGGGPAATAGGPRTS : : : : . .::. . .. ::. . . ::.: ..: :.:. FLJ001 EGKVRPRVTNSSPMGWSSAAPCTAAAASHPAVPPSAPDPRPATPQGGGAPRVAA--PQTT 350 360 370 380 390 400 140 150 160 170 FLJ001 PMSSGGPSAPGLRPPASSPKRNTTSLEGNRCGNVMHASASH .::.. :: . ::: .:. . :. :. FLJ001 -LSSSSTSAATVDPPAWTPSASRTQQARNKFFQTSAVPPGTSLSGRGPTPSLVLSKDSSK 410 420 430 440 450 460 >>KIAA0847 ( 645 res) hk05395 (645 aa) initn: 75 init1: 47 opt: 95 Z-score: 84.6 bits: 24.0 E(): 16 Smith-Waterman score: 95; 36.842% identity (56.140% similar) in 57 aa overlap (103-158:519-571) 80 90 100 110 120 130 FLJ001 KTVTTEEYLVNPVGMNRYSVDTSASTFNHRGSLHPSSSLYCKRQNSGDSHLGGGPAATAG :: .: :. :: . :. : : . KIAA08 VEARLRRYKVLGSSNSDSDLFSRLAQILQNGSQKPRSTTQCK--SPGSPHNPKTPPKSPV 490 500 510 520 530 540 140 150 160 170 FLJ001 GPRTSPMSSGGPSAPGL-RPPASSPKRNTTSLEGNRCGNVMHASASH :: :: :..: . .: : .:::.: KIAA08 VPRRSP--SASPRSSSLPRTSSSSPSRAGRPHHDQRSSSPHLGRSKSPPSHSGSSSSRRS 550 560 570 580 590 600 178 residues in 1 query sequences 2210816 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:44:29 2009 done: Fri Feb 27 10:44:29 2009 Total Scan time: 0.340 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]