# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj03287.fasta.huge -Q ../query/FLJ00384.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00384, 118 aa vs ./tmplib.10216 library 2210876 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 6.3962+/-0.00544; mu= 5.5757+/- 0.367 mean_var=181.5736+/-40.592, 0's: 0 Z-trim: 0 B-trim: 11 in 1/39 Lambda= 0.095180 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0781 ( 950 res) hk09678 ( 950) 109 25.8 4.8 KIAA0298 ( 901 res) hf00341(revised) ( 901) 108 25.6 5.1 KIAA1932 ( 795 res) fj14525 ( 795) 107 25.4 5.2 KIAA1224 ( 997 res) fh02652 ( 997) 107 25.5 5.9 KIAA0894 ( 553 res) hk08775 ( 553) 98 24.0 9.7 KIAA1557 ( 806 res) fh18848 ( 806) 100 24.5 10 KIAA0673 ( 1215 res) hk02385 (1215) 101 24.8 12 KIAA1644 ( 132 res) fg07060 ( 132) 86 21.5 13 KIAA2009 ( 501 res) fj05611 ( 501) 93 23.2 15 KIAA1989 ( 1097 res) fh00385 (1097) 97 24.2 16 KIAA0021 ( 703 res) ha00117(revised) ( 703) 94 23.6 17 KIAA0820 ( 892 res) bg00036 ( 892) 95 23.8 17 KIAA0775 ( 639 res) hk05255 ( 639) 91 23.1 21 KIAA1681 ( 1236 res) fh23697 (1236) 95 24.0 21 KIAA0940 ( 699 res) hh04894 ( 699) 91 23.1 22 FLJ00104 ( 287 res) as00104 ( 287) 85 21.8 23 KIAA0571 ( 683 res) hh02388 ( 683) 90 23.0 24 KIAA1048 ( 897 res) hh02560 ( 897) 91 23.3 25 KIAA1466 ( 505 res) fj01441 ( 505) 87 22.4 26 KIAA1297 ( 2242 res) fg03883 (2242) 96 24.5 27 KIAA1261 ( 787 res) hh15855b ( 787) 89 22.9 28 KIAA1479 ( 1022 res) fh17949 (1022) 90 23.2 30 KIAA1205 ( 1217 res) fg03511a (1217) 91 23.5 30 FLJ00232 ( 318 res) sj06640 ( 318) 82 21.5 32 KIAA1113 ( 1131 res) hj06379(revised) (1131) 89 23.1 35 KIAA1190 ( 174 res) hg03443a ( 174) 77 20.4 35 KIAA0606 ( 1369 res) ph00195 (1369) 90 23.4 36 KIAA1688 ( 1094 res) fh26207 (1094) 88 23.0 38 KIAA1066 ( 1346 res) ah03682 (1346) 89 23.2 39 KIAA1041 ( 642 res) fh02801 ( 642) 84 22.1 40 KIAA1295 ( 550 res) fg01760 ( 550) 83 21.9 40 FLJ00253 ( 349 res) sj09455 ( 349) 80 21.2 41 KIAA1388 ( 599 res) fj06552 ( 599) 83 22.0 42 KIAA1278 ( 1311 res) hg03689(revised) (1311) 87 22.9 47 KIAA1343 ( 520 res) fj00420 ( 520) 81 21.6 47 KIAA0371 ( 1203 res) hh00252 (1203) 86 22.8 49 KIAA0886 ( 1233 res) hk07722 (1233) 86 22.8 49 KIAA1438 ( 1075 res) hk07374s1 (1075) 85 22.6 50 FLJ00243 ( 503 res) sj07676 ( 503) 80 21.4 51 FLJ00342 ( 233 res) sf00009 ( 233) 75 20.3 51 FLJ00390 ( 322 res) sj04630 ( 322) 77 20.8 51 FLJ00155 ( 612 res) sh06465 ( 612) 81 21.7 52 KIAA1886 ( 655 res) fk01837 ( 655) 81 21.7 54 KIAA0403 ( 416 res) hg01159 ( 416) 78 21.1 54 FLJ00188 ( 201 res) sj02282 ( 201) 73 20.0 56 KIAA1566 ( 1313 res) fh21445 (1313) 85 22.7 56 FLJ00364 ( 601 res) sh04977 ( 601) 80 21.5 56 KIAA0434 ( 1571 res) hh02165 (1571) 86 22.9 57 KIAA0360 ( 1019 res) hh00062s1 (1019) 83 22.3 58 KIAA0200 ( 1042 res) ha02508 (1042) 83 22.3 59 >>KIAA0781 ( 950 res) hk09678 (950 aa) initn: 53 init1: 53 opt: 109 Z-score: 94.2 bits: 25.8 E(): 4.8 Smith-Waterman score: 109; 37.736% identity (56.604% similar) in 53 aa overlap (34-82:806-858) 10 20 30 40 50 FLJ003 LQIQSRSMPCGFNFFKSILLRDDVYLINVPSLHVQFYEFWHIYVPMQ--PVPSSKS--GA : ..:. : : :: :.::... .: KIAA07 PLPRQETPPPSQQAPPFSLTQPLSPVLEPSSEQMQYSPFLSQYQEMQLQPLPSTSGPRAA 780 790 800 810 820 830 60 70 80 90 100 110 FLJ003 HPLSSQKAPQALPSQPPAPSPQQSASITWAAFSCSRHHGYEADPGFFCSAVLKLIHDVQ :: .: : : :: : :.: KIAA07 PPLPTQLQQQQPPPPPPPPPPRQPGAAPAPLQFSYQTCELPSAASPAPDYPTPCQYPVDG 840 850 860 870 880 890 >>KIAA0298 ( 901 res) hf00341(revised) (901 aa) initn: 102 init1: 67 opt: 108 Z-score: 93.7 bits: 25.6 E(): 5.1 Smith-Waterman score: 108; 27.586% identity (50.575% similar) in 87 aa overlap (30-115:462-542) 10 20 30 40 50 FLJ003 SLDLQIQSRSMPCGFNFFKSILLRDDVYLINVPSLHVQFYEFWHIYVP-MQPVPSSKSG ...::..::: . .. . .: :... KIAA02 SQRLGQQLTSQPVCIVPPQDVQQGAHAQPTLQTPSIQVQFGHHQKLKLSHFQQQPQQQLP 440 450 460 470 480 490 60 70 80 90 100 110 FLJ003 AHPLSSQKAPQALPSQPPAPSPQQSASITWAAFSCSRHHGYEADPGFFCSAVLKLIHDVQ : . : :: : : : : :. :.: :. :: :: . ..: KIAA02 PPPPPLPHPPPPLPPPPQQPHPPLPPSQHLAS---SQH---ESPPGPACSQNMDIMHHKF 500 510 520 530 540 KIAA02 ELEEMQKDLELLLQAQQPSLQLSQTKSPQHLQQTIVGQINYIVRQPAPVQSQSQEETLQA 550 560 570 580 590 600 >>KIAA1932 ( 795 res) fj14525 (795 aa) initn: 78 init1: 48 opt: 107 Z-score: 93.6 bits: 25.4 E(): 5.2 Smith-Waterman score: 107; 48.780% identity (60.976% similar) in 41 aa overlap (46-84:118-155) 20 30 40 50 60 70 FLJ003 NFFKSILLRDDVYLINVPSLHVQFYEFWHIYVPMQPVPSSKSGAHPLSSQKAPQALPS-Q : :: :::. . .: : :: ::: : KIAA19 YVSQAEASALQQQQYYQWYQQYNYAYPYSYYYPMPPVPGMD---ESMSYQAPPQQLPSAQ 90 100 110 120 130 140 80 90 100 110 FLJ003 PPAPS-PQQSASITWAAFSCSRHHGYEADPGFFCSAVLKLIHDVQ :: :: : ..: KIAA19 PPQPSNPPHGAHTLNSGPQPGTAPATQHSQAGPATGQAYGPHTYTEPAKPKKGQQLWNRM 150 160 170 180 190 200 >>KIAA1224 ( 997 res) fh02652 (997 aa) initn: 140 init1: 79 opt: 107 Z-score: 92.5 bits: 25.5 E(): 5.9 Smith-Waterman score: 107; 51.429% identity (60.000% similar) in 35 aa overlap (51-85:896-929) 30 40 50 60 70 80 FLJ003 ILLRDDVYLINVPSLHVQFYEFWHIYVPMQPVPSSKSGAHPLSSQKAPQALPSQPPAPSP : :::.:: :: . :: ::::: : KIAA12 KPLSHPMQETMPHAGSSDQPHPSIQQGLHVPHPSSQSGP-PLHHSGAPPPPPSQPPRQPP 870 880 890 900 910 920 90 100 110 FLJ003 QQSASITWAAFSCSRHHGYEADPGFFCSAVLKLIHDVQ : . : KIAA12 QAAPSSHPHSDLTFNPSSALEGQAGAQGASDMPEPSLDLLPELTNPDELLSYLDPPDLPS 930 940 950 960 970 980 >>KIAA0894 ( 553 res) hk08775 (553 aa) initn: 82 init1: 50 opt: 98 Z-score: 88.6 bits: 24.0 E(): 9.7 Smith-Waterman score: 98; 37.179% identity (62.821% similar) in 78 aa overlap (19-96:381-450) 10 20 30 40 FLJ003 SLDLQIQSRSMPCGFNFFKSILLRDDVYLINVPSLHVQFYEFWHIYVP :: :::. .::.. : : .. . : . : KIAA08 ASYTRFTTIRKHEQQQTSRQPEWRLDARGDKSTLLRN-IYLMS-P-LPFRLKKPLH-HHP 360 370 380 390 400 50 60 70 80 90 100 FLJ003 MQPVPSSKSGAHPLSSQKAPQALPSQPPAPSPQQSASITWAAFSCSRHHGYEADPGFFCS :: :...:: : .:: :. ::::: .: .... . . ::: KIAA08 RQPSPGDSSGL--LVGQK-PD-LPSQPHQDQPPSGGKPVVPTRLSSRHTMARLSRSSEPS 410 420 430 440 450 460 110 FLJ003 AVLKLIHDVQ KIAA08 QERPTALEDYPRAINNGNSVPYSDHSLDRNNNPQSELAPSRGGGILCVCLVSPARPSTLL 470 480 490 500 510 520 >>KIAA1557 ( 806 res) fh18848 (806 aa) initn: 85 init1: 85 opt: 100 Z-score: 88.3 bits: 24.5 E(): 10 Smith-Waterman score: 100; 36.000% identity (56.000% similar) in 50 aa overlap (48-95:565-612) 20 30 40 50 60 70 FLJ003 FKSILLRDDVYLINVPSLHVQFYEFWHIYVPMQPVPSSKSGAHPLSSQKAPQALPSQPPA :: : :. . ..: ::: .: . ::: KIAA15 TVAKVAIESAVQQKQQHPPTYVQNVVPQNTPMPPSPAVQVQGQPNSSQPSPFSGSSQPGD 540 550 560 570 580 590 80 90 100 110 FLJ003 P--SPQQSASITWAAFSCSRHHGYEADPGFFCSAVLKLIHDVQ : .: :. : ::.. KIAA15 PMRKPGQNFMCLWQ--SCKKWFQTPSQVFYHAATEHGGKDVYPGQCLWEGCEPFQRQRFS 600 610 620 630 640 650 >>KIAA0673 ( 1215 res) hk02385 (1215 aa) initn: 105 init1: 59 opt: 101 Z-score: 87.1 bits: 24.8 E(): 12 Smith-Waterman score: 101; 30.233% identity (54.651% similar) in 86 aa overlap (1-81:195-277) 10 20 FLJ003 SLDLQ--IQSRSMPCG-FNFFKSILLRDDV .: :: :: : .. .. . ..: KIAA06 SVTSLSNLACMHMVRWAVWNPLLEADSGRVTLPLQGGIQPNPSHCLVYKVPSASMSSEEV 170 180 190 200 210 220 30 40 50 60 70 80 FLJ003 YLINVPSLHVQFY--EFWHIYVPMQPVPSSKSGAHPLSSQKAPQALPSQPPAPSPQQSAS .. .:. :: :. .: .:: . : .: :.: : . ::.:::: :. KIAA06 KQVESGTLRFQFSLGSEEHLDAPTEPVSGPKVERRP--SRKPPTS-PSSPPAPVPRVLAA 230 240 250 260 270 280 90 100 110 FLJ003 ITWAAFSCSRHHGYEADPGFFCSAVLKLIHDVQ KIAA06 PQNSPVGPGLSISQLAASPRSPTQHCLARPTSQLPHGSQASPAQAQEFPLEAGISHLEAD 290 300 310 320 330 340 >>KIAA1644 ( 132 res) fg07060 (132 aa) initn: 81 init1: 49 opt: 86 Z-score: 86.5 bits: 21.5 E(): 13 Smith-Waterman score: 86; 24.675% identity (53.247% similar) in 77 aa overlap (15-86:38-112) 10 20 30 40 FLJ003 SLDLQIQSRSMPCGFNFFKSILLRDDVYLINVPSLHVQ--FYEF ..:: .:: :. .. . . . KIAA16 EFQAVMQANLTASSEGYMHNNYTALLGVWIYGFFVLMLLVLDLLYYSAMNYDICKVYLAR 10 20 30 40 50 60 50 60 70 80 90 FLJ003 WHI---YVPMQPVPSSKSGAHPLSSQKAPQALPSQPPAPSPQQSASITWAAFSCSRHHGY : : .. ..: .. . : .:.::: :. ::.: :: .. KIAA16 WGIQGRWMKQDPRRWGNPARAPRPGQRAPQ--PQPPPGPLPQAPQAVHTLRGDAHSPPLM 70 80 90 100 110 120 100 110 FLJ003 EADPGFFCSAVLKLIHDVQ KIAA16 TFQSSSA 130 >>KIAA2009 ( 501 res) fj05611 (501 aa) initn: 77 init1: 77 opt: 93 Z-score: 85.4 bits: 23.2 E(): 15 Smith-Waterman score: 93; 34.043% identity (51.064% similar) in 47 aa overlap (63-109:284-330) 40 50 60 70 80 90 FLJ003 PSLHVQFYEFWHIYVPMQPVPSSKSGAHPLSSQKAPQALPSQPPAPSPQQSASITWAAFS : . :. :. :::.: .: . :: : KIAA20 SPALSFAHNGNNNNNGNGYTYTAGGEASVPSPDGCPELQPTFDPAPAPPPGAPLIWAQFE 260 270 280 290 300 310 100 110 FLJ003 CSRHHGYEADPGFFCSAVLKLIHDVQ : : : . ::. KIAA20 RSPGGGPAAPVSSSCSSSASSSASSSSVVFPGGGASAPSNANLGLLVHRRLHPGTSCPRL 320 330 340 350 360 370 >>KIAA1989 ( 1097 res) fh00385 (1097 aa) initn: 35 init1: 35 opt: 97 Z-score: 84.6 bits: 24.2 E(): 16 Smith-Waterman score: 97; 32.895% identity (53.947% similar) in 76 aa overlap (33-100:961-1034) 10 20 30 40 50 60 FLJ003 DLQIQSRSMPCGFNFFKSILLRDDVYLINVPSLHVQFYEFWHIYVPMQPVPSSKSGAHPL : : .: . .. : ::: : : : KIAA19 ESDYYLGGYDIDSEYPPPHEEEFLSQDQLPPPLPEDFPDQYEALPPSQPV-SLASTLSP- 940 950 960 970 980 70 80 90 100 110 FLJ003 SSQKAPQALPSQ--PPAPSPQQS------ASITWAAFSCSRHHGYEADPGFFCSAVLKLI . .. :: ::: :: : :... :: ...:. : ..: : KIAA19 DCRRRPQFHPSQYLPPHPFPNETDLVGPPASCEFSTFAVSMNQGTEPTGPADSVSLSLHN 990 1000 1010 1020 1030 1040 FLJ003 HDVQ KIAA19 SRGTSSSDVSANCGFDDSEVAMSDYESVGELSLASLHIPFVETQHQTQV 1050 1060 1070 1080 1090 118 residues in 1 query sequences 2210876 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:34 2009 done: Fri Feb 27 11:02:34 2009 Total Scan time: 0.310 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]