# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj03287.fasta.nr -Q ../query/FLJ00384.ptfa /cdna2/lib/nr/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 FLJ00384, 118 aa
 vs /cdna2/lib/nr/nr library

2693465022 residues in 7827732 sequences
 statistics sampled from 60000 to 7826615 sequences
  Expectation_n fit: rho(ln(x))= 5.6738+/-0.00019; mu= 3.4063+/- 0.011
 mean_var=88.2649+/-16.841, 0's: 40 Z-trim: 41  B-trim: 0 in 0/67
 Lambda= 0.136515

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(7827732)
gi|21748614|dbj|BAC03444.1| FLJ00384 protein [Homo ( 118)  832 172.5 1.3e-41


>>gi|21748614|dbj|BAC03444.1| FLJ00384 protein [Homo sap  (118 aa)
 initn: 832 init1: 832 opt: 832  Z-score: 903.1  bits: 172.5 E(): 1.3e-41
Smith-Waterman score: 832;  100.000% identity (100.000% similar) in 118 aa overlap (1-118:1-118)

               10        20        30        40        50        60
FLJ003 SLDLQIQSRSMPCGFNFFKSILLRDDVYLINVPSLHVQFYEFWHIYVPMQPVPSSKSGAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|217 SLDLQIQSRSMPCGFNFFKSILLRDDVYLINVPSLHVQFYEFWHIYVPMQPVPSSKSGAH
               10        20        30        40        50        60

               70        80        90       100       110        
FLJ003 PLSSQKAPQALPSQPPAPSPQQSASITWAAFSCSRHHGYEADPGFFCSAVLKLIHDVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|217 PLSSQKAPQALPSQPPAPSPQQSASITWAAFSCSRHHGYEADPGFFCSAVLKLIHDVQ
               70        80        90       100       110        




118 residues in 1 query   sequences
2693465022 residues in 7827732 library sequences
 Tcomplib [34.26] (2 proc)
 start: Fri Feb 27 23:53:13 2009 done: Fri Feb 27 23:56:57 2009
 Total Scan time: 532.640 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]