# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj03504.fasta.nr -Q ../query/FLJ00198.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00198, 677 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7798992 sequences Expectation_n fit: rho(ln(x))= 7.3563+/-0.000225; mu= 4.4505+/- 0.012 mean_var=228.7706+/-43.821, 0's: 35 Z-trim: 111 B-trim: 92 in 1/66 Lambda= 0.084796 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|18676600|dbj|BAB84952.1| FLJ00198 protein [Homo ( 677) 4596 575.5 2.1e-161 gi|119594665|gb|EAW74259.1| hCG23402, isoform CRA_ ( 648) 4307 540.1 8.9e-151 gi|21748560|dbj|BAC03417.1| FLJ00354 protein [Homo (1041) 3011 381.8 6.4e-103 gi|88196790|ref|NP_115627.5| coiled-coil domain co (1476) 2631 335.5 7.8e-89 gi|119594663|gb|EAW74257.1| hCG23402, isoform CRA_ ( 763) 2626 334.5 7.9e-89 gi|146424321|gb|AAI41867.1| CCDC88B protein [Homo (1240) 2625 334.7 1.2e-88 gi|167006538|sp|A6NC98.1|CC88B_HUMAN RecName: Full (1476) 2624 334.7 1.4e-88 gi|187954537|gb|AAI40825.1| Coiled-coil domain con (1476) 2613 333.3 3.6e-88 gi|114647365|ref|XP_508899.2| PREDICTED: similar t ( 562) 1883 243.5 1.5e-61 gi|109109512|ref|XP_001114517.1| PREDICTED: simila ( 598) 1758 228.2 6.3e-57 gi|119594662|gb|EAW74256.1| hCG23402, isoform CRA_ ( 330) 1752 227.2 7.2e-57 gi|119919231|ref|XP_588183.3| PREDICTED: coiled-co (1463) 1701 221.7 1.4e-54 gi|73983740|ref|XP_540883.2| PREDICTED: similar to (1348) 1614 211.1 2.1e-51 gi|68085626|gb|AAH76600.1| Ccdc88b protein [Mus mu (1133) 1545 202.5 6.5e-49 gi|187957182|gb|AAI57947.1| Coiled-coil domain con (1481) 1545 202.7 7.7e-49 gi|167006539|sp|Q4QRL3.2|CC88B_MOUSE RecName: Full (1481) 1545 202.7 7.7e-49 gi|109463441|ref|XP_001072042.1| PREDICTED: simila (1476) 1539 201.9 1.3e-48 gi|149489365|ref|XP_001508973.1| PREDICTED: simila (1035) 848 117.2 2.9e-23 gi|116283899|gb|AAH40232.1| CCDC88B protein [Homo ( 696) 712 100.3 2.3e-18 gi|18676630|dbj|BAB84967.1| FLJ00214 protein [Homo ( 322) 621 88.8 3.2e-15 gi|194218402|ref|XP_001916645.1| PREDICTED: simila (1157) 571 83.4 4.9e-13 gi|109105854|ref|XP_001118276.1| PREDICTED: simila ( 640) 504 74.9 9.9e-11 gi|2246532|gb|AAB62657.1| ORF 73 [Human herpesviru (1089) 385 60.6 3.3e-06 gi|5669894|gb|AAD46501.1|AF148805_6 ORF73 [Human h (1129) 376 59.5 7.3e-06 gi|170946080|emb|CAP72881.1| unnamed protein produ ( 704) 344 55.3 8.2e-05 gi|116223633|gb|ABJ82342.1| Collagen triple helix ( 434) 337 54.2 0.00011 gi|64173275|gb|AAY41125.1| unknown [Human herpesvi ( 641) 335 54.2 0.00017 gi|119110|sp|P03211.1|EBNA1_EBV RecName: Full=Epst ( 641) 335 54.2 0.00017 gi|13936996|gb|AAK50002.1| ORF73 [Human herpesviru (1003) 337 54.7 0.00019 gi|1174415|sp|P46804.1|SPD2_NEPCL RecName: Full=Sp ( 627) 333 53.9 0.00019 gi|13562008|gb|AAK30607.1|AF350278_1 major ampulla ( 563) 332 53.7 0.0002 gi|82617826|gb|ABB84821.1| uncharacterized Gly-ric (1293) 335 54.6 0.00026 gi|21622317|emb|CAD37020.1| related to kinetoplast ( 899) 331 53.9 0.00029 gi|13561982|gb|AAK30594.1|AF350265_1 flagelliform (1002) 331 53.9 0.00031 gi|13561996|gb|AAK30601.1|AF350272_1 major ampulla ( 342) 322 52.2 0.00034 gi|2769728|gb|AAC40340.1| HN1 [Human herpesvirus 6 ( 279) 317 51.5 0.00046 gi|219525741|gb|ACL15289.1| p200 [Babesia bovis] ( 647) 323 52.7 0.00046 gi|3879952|emb|CAB03369.1| C. elegans protein T21B ( 312) 316 51.5 0.00053 gi|219525743|gb|ACL15290.1| p200 [Babesia bovis] ( 611) 319 52.2 0.00063 gi|70913273|gb|AAZ15371.1| major ampullate spidroi ( 661) 319 52.2 0.00066 gi|2833647|gb|AAC38846.1| flagelliform silk protei ( 871) 321 52.6 0.00066 gi|169801895|gb|EDS89466.1| Rab family GTPase [Ent ( 750) 318 52.2 0.00078 gi|1263287|gb|AAC47010.1| fibroin-3 ( 636) 312 51.4 0.0012 gi|70866024|gb|EAN81788.1| membrane associated pro ( 939) 314 51.8 0.0013 gi|219525739|gb|ACL15288.1| p200 [Babesia bovis] ( 555) 309 50.9 0.0014 gi|13562000|gb|AAK30603.1|AF350274_1 major ampulla ( 373) 306 50.3 0.0014 gi|13561986|gb|AAK30596.1|AF350267_1 major ampulla ( 444) 307 50.6 0.0014 gi|154796174|gb|EDO05356.1| 200 kDa antigen p200 [ (1023) 313 51.7 0.0014 gi|11037008|gb|AAG27458.1|AF305694_1 latent nuclea (1036) 313 51.8 0.0014 gi|82703982|gb|ABB89251.1| EBNA-1 [Human herpesvir ( 641) 308 50.9 0.0016 >>gi|18676600|dbj|BAB84952.1| FLJ00198 protein [Homo sap (677 aa) initn: 4596 init1: 4596 opt: 4596 Z-score: 3054.0 bits: 575.5 E(): 2.1e-161 Smith-Waterman score: 4596; 100.000% identity (100.000% similar) in 677 aa overlap (1-677:1-677) 10 20 30 40 50 60 FLJ001 TQCSRHQLSVPRHLIQTHRRQRVPFRQLPWTPRPQTGPRQESGSPVETQESPEKAGRRSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 TQCSRHQLSVPRHLIQTHRRQRVPFRQLPWTPRPQTGPRQESGSPVETQESPEKAGRRSS 10 20 30 40 50 60 70 80 90 100 110 120 FLJ001 LQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKPGPSEPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 LQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKPGPSEPSS 70 80 90 100 110 120 130 140 150 160 170 180 FLJ001 VQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQVWEGPIPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 VQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQVWEGPIPG 130 140 150 160 170 180 190 200 210 220 230 240 FLJ001 ESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELAQARRAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 ESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELAQARRAEA 190 200 210 220 230 240 250 260 270 280 290 300 FLJ001 EAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWEREGSRLRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 EAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWEREGSRLRA 250 260 270 280 290 300 310 320 330 340 350 360 FLJ001 QSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEHLQRELEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 QSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEHLQRELEQ 310 320 330 340 350 360 370 380 390 400 410 420 FLJ001 AALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEEELFQLRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 AALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEEELFQLRQ 370 380 390 400 410 420 430 440 450 460 470 480 FLJ001 GPAGLGPKKRAEPQLVETQNVRLIEVERSVSVGPQWALGRCPVQCECGSTVDPGLGGIPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 GPAGLGPKKRAEPQLVETQNVRLIEVERSVSVGPQWALGRCPVQCECGSTVDPGLGGIPC 430 440 450 460 470 480 490 500 510 520 530 540 FLJ001 SVSVDSQWARGWGCPMQCECGPVVGTRGCPRHLAIANPHFWAECDAGGREGSFAGAAAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 SVSVDSQWARGWGCPMQCECGPVVGTRGCPRHLAIANPHFWAECDAGGREGSFAGAAAAP 490 500 510 520 530 540 550 560 570 580 590 600 FLJ001 GGAAGEPAGPCPGAAAAEPAGAGAQQPPAGREVCAGDSGPGAAPEAGGAGGGGAGGTAVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 GGAAGEPAGPCPGAAAAEPAGAGAQQPPAGREVCAGDSGPGAAPEAGGAGGGGAGGTAVP 550 560 570 580 590 600 610 620 630 640 650 660 FLJ001 GGDPRAAAGPASGPQGPGTAAAAAGGRARGTAGAAPRPQGQHAGTGAGPPGAAGPARAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 GGDPRAAAGPASGPQGPGTAAAAAGGRARGTAGAAPRPQGQHAGTGAGPPGAAGPARAAA 610 620 630 640 650 660 670 FLJ001 GPAGQRGGTGGGPAGRA ::::::::::::::::: gi|186 GPAGQRGGTGGGPAGRA 670 >>gi|119594665|gb|EAW74259.1| hCG23402, isoform CRA_d [H (648 aa) initn: 4304 init1: 4304 opt: 4307 Z-score: 2863.1 bits: 540.1 E(): 8.9e-151 Smith-Waterman score: 4307; 98.765% identity (98.920% similar) in 648 aa overlap (30-677:8-648) 10 20 30 40 50 60 FLJ001 TQCSRHQLSVPRHLIQTHRRQRVPFRQLPWTPRPQTGPRQESGSPVETQESPEKAGRRSS :.: ::::::::::::::::::::: gi|119 MDPQASDWSP-------QESGSPVETQESPEKAGRRSS 10 20 30 70 80 90 100 110 120 FLJ001 LQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKPGPSEPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKPGPSEPSS 40 50 60 70 80 90 130 140 150 160 170 180 FLJ001 VQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQVWEGPIPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQVWEGPIPG 100 110 120 130 140 150 190 200 210 220 230 240 FLJ001 ESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELAQARRAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELAQARRAEA 160 170 180 190 200 210 250 260 270 280 290 300 FLJ001 EAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWEREGSRLRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWEREGSRLRA 220 230 240 250 260 270 310 320 330 340 350 360 FLJ001 QSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEHLQRELEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEHLQRELEQ 280 290 300 310 320 330 370 380 390 400 410 420 FLJ001 AALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEEELFQLRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEEELFQLRQ 340 350 360 370 380 390 430 440 450 460 470 480 FLJ001 GPAGLGPKKRAEPQLVETQNVRLIEVERSVSVGPQWALGRCPVQCECGSTVDPGLGGIPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GPAGLGPKKRAEPQLVETQNVRLIEVERSVSVGPQWALGRCPVQCECGSTVDPGLGGIPC 400 410 420 430 440 450 490 500 510 520 530 540 FLJ001 SVSVDSQWARGWGCPMQCECGPVVGTRGCPRHLAIANPHFWAECDAGGREGSFAGAAAAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 SVSVDSQWARGWGCPMQCECGPVVGTRGCPRHLAIANPHFWAECDAGGREGSFAGAAAAP 460 470 480 490 500 510 550 560 570 580 590 600 FLJ001 GGAAGEPAGPCPGAAAAEPAGAGAQQPPAGREVCAGDSGPGAAPEAGGAGGGGAGGTAVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GGAAGEPAGPCPGAAAAEPAGAGAQQPPAGREVCAGDSGPGAAPEAGGAGGGGAGGTAVP 520 530 540 550 560 570 610 620 630 640 650 660 FLJ001 GGDPRAAAGPASGPQGPGTAAAAAGGRARGTAGAAPRPQGQHAGTGAGPPGAAGPARAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GGDPRAAAGPASGPQGPGTAAAAAGGRARGTAGAAPRPQGQHAGTGAGPPGAAGPARAAA 580 590 600 610 620 630 670 FLJ001 GPAGQRGGTGGGPAGRA ::::::::::::::::: gi|119 GPAGQRGGTGGGPAGRA 640 >>gi|21748560|dbj|BAC03417.1| FLJ00354 protein [Homo sap (1041 aa) initn: 3003 init1: 3003 opt: 3011 Z-score: 2004.0 bits: 381.8 E(): 6.4e-103 Smith-Waterman score: 3011; 97.046% identity (97.890% similar) in 474 aa overlap (24-497:568-1041) 10 20 30 40 50 FLJ001 TQCSRHQLSVPRHLIQTHRRQRVPFRQLPWTPRPQTGPRQESGSPVETQESPE :.. :. . :::::::::::::: gi|217 DLAPPALDSVLEASAECPQAPDSDPQEAESPLQAAAMDPQASDWSPQESGSPVETQESPE 540 550 560 570 580 590 60 70 80 90 100 110 FLJ001 KAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 KAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKP 600 610 620 630 640 650 120 130 140 150 160 170 FLJ001 GPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 GPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQV 660 670 680 690 700 710 180 190 200 210 220 230 FLJ001 WEGPIPGESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 WEGPIPGESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELA 720 730 740 750 760 770 240 250 260 270 280 290 FLJ001 QARRAEAEAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 QARRAEAEAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWER 780 790 800 810 820 830 300 310 320 330 340 350 FLJ001 EGSRLRAQSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 EGSRLRAQSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEH 840 850 860 870 880 890 360 370 380 390 400 410 FLJ001 LQRELEQAALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 LQRELEQAALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEE 900 910 920 930 940 950 420 430 440 450 460 470 FLJ001 ELFQLRQGPAGLGPKKRAEPQLVETQNVRLIEVERSVSVGPQWALGRCPVQCECGSTVDP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 ELFQLRQGPAGLGPKKRAEPQLVETQNVRLIEVERSVSVGPQWALGRCPVQCECGSTVDP 960 970 980 990 1000 1010 480 490 500 510 520 530 FLJ001 GLGGIPCSVSVDSQWARGWGCPMQCECGPVVGTRGCPRHLAIANPHFWAECDAGGREGSF :::::::::::::::::::::::: gi|217 GLGGIPCSVSVDSQWARGWGCPMQ 1020 1030 1040 >>gi|88196790|ref|NP_115627.5| coiled-coil domain contai (1476 aa) initn: 2654 init1: 2623 opt: 2631 Z-score: 1751.1 bits: 335.5 E(): 7.8e-89 Smith-Waterman score: 2631; 96.714% identity (97.653% similar) in 426 aa overlap (24-449:561-986) 10 20 30 40 50 FLJ001 TQCSRHQLSVPRHLIQTHRRQRVPFRQLPWTPRPQTGPRQESGSPVETQESPE :.. :. . :::::::::::::: gi|881 DLAPPALDSVLEASAECPQAPDSDPQEAESPLQAAAMDPQASDWSPQESGSPVETQESPE 540 550 560 570 580 590 60 70 80 90 100 110 FLJ001 KAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|881 KAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKP 600 610 620 630 640 650 120 130 140 150 160 170 FLJ001 GPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|881 GPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQV 660 670 680 690 700 710 180 190 200 210 220 230 FLJ001 WEGPIPGESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|881 WEGPIPGESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELA 720 730 740 750 760 770 240 250 260 270 280 290 FLJ001 QARRAEAEAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|881 QARRAEAEAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWER 780 790 800 810 820 830 300 310 320 330 340 350 FLJ001 EGSRLRAQSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|881 EGSRLRAQSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEH 840 850 860 870 880 890 360 370 380 390 400 410 FLJ001 LQRELEQAALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|881 LQRELEQAALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEE 900 910 920 930 940 950 420 430 440 450 460 470 FLJ001 ELFQLRQGPAGLGPKKRAEPQLVETQNVRLIEVERSVSVGPQWALGRCPVQCECGSTVDP :::::::::::::::::::::::::::::::::::: gi|881 ELFQLRQGPAGLGPKKRAEPQLVETQNVRLIEVERSNAMLVAEKAALQGQLQHLEGQLGS 960 970 980 990 1000 1010 480 490 500 510 520 530 FLJ001 GLGGIPCSVSVDSQWARGWGCPMQCECGPVVGTRGCPRHLAIANPHFWAECDAGGREGSF gi|881 LQGRAQELLLQSQRAQEHSSRLQAEKSVLEIQGQELHRKLEVLEEEVRAARQSQEETRGQ 1020 1030 1040 1050 1060 1070 >>gi|119594663|gb|EAW74257.1| hCG23402, isoform CRA_b [H (763 aa) initn: 2623 init1: 2623 opt: 2626 Z-score: 1751.0 bits: 334.5 E(): 7.9e-89 Smith-Waterman score: 2626; 98.095% identity (98.333% similar) in 420 aa overlap (30-449:8-420) 10 20 30 40 50 60 FLJ001 TQCSRHQLSVPRHLIQTHRRQRVPFRQLPWTPRPQTGPRQESGSPVETQESPEKAGRRSS :.: ::::::::::::::::::::: gi|119 MDPQASDWSP-------QESGSPVETQESPEKAGRRSS 10 20 30 70 80 90 100 110 120 FLJ001 LQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKPGPSEPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKPGPSEPSS 40 50 60 70 80 90 130 140 150 160 170 180 FLJ001 VQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQVWEGPIPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQVWEGPIPG 100 110 120 130 140 150 190 200 210 220 230 240 FLJ001 ESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELAQARRAEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELAQARRAEA 160 170 180 190 200 210 250 260 270 280 290 300 FLJ001 EAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWEREGSRLRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWEREGSRLRA 220 230 240 250 260 270 310 320 330 340 350 360 FLJ001 QSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEHLQRELEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEHLQRELEQ 280 290 300 310 320 330 370 380 390 400 410 420 FLJ001 AALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEEELFQLRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEEELFQLRQ 340 350 360 370 380 390 430 440 450 460 470 480 FLJ001 GPAGLGPKKRAEPQLVETQNVRLIEVERSVSVGPQWALGRCPVQCECGSTVDPGLGGIPC ::::::::::::::::::::::::::::: gi|119 GPAGLGPKKRAEPQLVETQNVRLIEVERSNAMLVAEKAALQGQLQHLEGQLGSLQGRAQE 400 410 420 430 440 450 >>gi|146424321|gb|AAI41867.1| CCDC88B protein [Homo sapi (1240 aa) initn: 2617 init1: 2617 opt: 2625 Z-score: 1747.9 bits: 334.7 E(): 1.2e-88 Smith-Waterman score: 2625; 96.479% identity (97.418% similar) in 426 aa overlap (24-449:561-986) 10 20 30 40 50 FLJ001 TQCSRHQLSVPRHLIQTHRRQRVPFRQLPWTPRPQTGPRQESGSPVETQESPE :.. :. . :::::::::::::: gi|146 DLAPPALDSVLEASAECPQAPDSDPQEAESPLQAAAMDPQASDWSPQESGSPVETQESPE 540 550 560 570 580 590 60 70 80 90 100 110 FLJ001 KAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|146 KAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKP 600 610 620 630 640 650 120 130 140 150 160 170 FLJ001 GPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|146 GPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQV 660 670 680 690 700 710 180 190 200 210 220 230 FLJ001 WEGPIPGESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|146 WEGPIPGESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELA 720 730 740 750 760 770 240 250 260 270 280 290 FLJ001 QARRAEAEAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|146 QARRAEAEAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWER 780 790 800 810 820 830 300 310 320 330 340 350 FLJ001 EGSRLRAQSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|146 EGSRLRAQSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEH 840 850 860 870 880 890 360 370 380 390 400 410 FLJ001 LQRELEQAALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEE :::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: gi|146 LQRELEQAALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKIRALQLEE 900 910 920 930 940 950 420 430 440 450 460 470 FLJ001 ELFQLRQGPAGLGPKKRAEPQLVETQNVRLIEVERSVSVGPQWALGRCPVQCECGSTVDP :::::::::::::::::::::::::::::::::::: gi|146 ELFQLRQGPAGLGPKKRAEPQLVETQNVRLIEVERSNAMLVAEKAALQGQLQHLEGQLGS 960 970 980 990 1000 1010 480 490 500 510 520 530 FLJ001 GLGGIPCSVSVDSQWARGWGCPMQCECGPVVGTRGCPRHLAIANPHFWAECDAGGREGSF gi|146 LQGRAQELLLQSQRAQEHSSRLQAEKSVLEIQGQELHRKLEVLEEEVRAARQSQEETRGQ 1020 1030 1040 1050 1060 1070 >>gi|167006538|sp|A6NC98.1|CC88B_HUMAN RecName: Full=Coi (1476 aa) initn: 2647 init1: 2616 opt: 2624 Z-score: 1746.4 bits: 334.7 E(): 1.4e-88 Smith-Waterman score: 2624; 96.479% identity (97.418% similar) in 426 aa overlap (24-449:561-986) 10 20 30 40 50 FLJ001 TQCSRHQLSVPRHLIQTHRRQRVPFRQLPWTPRPQTGPRQESGSPVETQESPE :.. :. . :::::::::::::: gi|167 DLAPPALDSVLEASAECPQAPDSDPQEAESPLQAAAMDPQASDWSPQESGSPVETQESPE 540 550 560 570 580 590 60 70 80 90 100 110 FLJ001 KAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 KAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKP 600 610 620 630 640 650 120 130 140 150 160 170 FLJ001 GPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 GPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQV 660 670 680 690 700 710 180 190 200 210 220 230 FLJ001 WEGPIPGESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 WEGPIPGESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELA 720 730 740 750 760 770 240 250 260 270 280 290 FLJ001 QARRAEAEAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 QARRAEAEAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWER 780 790 800 810 820 830 300 310 320 330 340 350 FLJ001 EGSRLRAQSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEH ::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::: gi|167 EGSRLRAQSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGDRLEH 840 850 860 870 880 890 360 370 380 390 400 410 FLJ001 LQRELEQAALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 LQRELEQAALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEE 900 910 920 930 940 950 420 430 440 450 460 470 FLJ001 ELFQLRQGPAGLGPKKRAEPQLVETQNVRLIEVERSVSVGPQWALGRCPVQCECGSTVDP :::::::::::::::::::::::::::::::::::: gi|167 ELFQLRQGPAGLGPKKRAEPQLVETQNVRLIEVERSNAMLVAEKAALQGQLQHLEGQLGS 960 970 980 990 1000 1010 480 490 500 510 520 530 FLJ001 GLGGIPCSVSVDSQWARGWGCPMQCECGPVVGTRGCPRHLAIANPHFWAECDAGGREGSF gi|167 LQGRAQELLLQSQRAQEHSSRLQAEKSVLEIQGQELHRKLEVLEEEVRAARQSQEETRGQ 1020 1030 1040 1050 1060 1070 >>gi|187954537|gb|AAI40825.1| Coiled-coil domain contain (1476 aa) initn: 2636 init1: 2605 opt: 2613 Z-score: 1739.2 bits: 333.3 E(): 3.6e-88 Smith-Waterman score: 2613; 96.479% identity (97.418% similar) in 426 aa overlap (24-449:561-986) 10 20 30 40 50 FLJ001 TQCSRHQLSVPRHLIQTHRRQRVPFRQLPWTPRPQTGPRQESGSPVETQESPE :.. :. . :::::::::::::: gi|187 DLAPPALDSVLEASAECPQAPDSDPQEAESPLQAAAMDPQASDWSPQESGSPVETQESPE 540 550 560 570 580 590 60 70 80 90 100 110 FLJ001 KAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKP :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: gi|187 KAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEARGLRQEGPEHKP 600 610 620 630 640 650 120 130 140 150 160 170 FLJ001 GPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|187 GPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQV 660 670 680 690 700 710 180 190 200 210 220 230 FLJ001 WEGPIPGESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|187 WEGPIPGESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELA 720 730 740 750 760 770 240 250 260 270 280 290 FLJ001 QARRAEAEAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|187 QARRAEAEAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWER 780 790 800 810 820 830 300 310 320 330 340 350 FLJ001 EGSRLRAQSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|187 EGSRLRAQSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEH 840 850 860 870 880 890 360 370 380 390 400 410 FLJ001 LQRELEQAALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|187 LQRELEQAALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEE 900 910 920 930 940 950 420 430 440 450 460 470 FLJ001 ELFQLRQGPAGLGPKKRAEPQLVETQNVRLIEVERSVSVGPQWALGRCPVQCECGSTVDP :::::::::::::::::::::::::::::::::::: gi|187 ELFQLRQGPAGLGPKKRAEPQLVETQNVRLIEVERSNAMLVAEKAALQGQLQHLEGQLGS 960 970 980 990 1000 1010 480 490 500 510 520 530 FLJ001 GLGGIPCSVSVDSQWARGWGCPMQCECGPVVGTRGCPRHLAIANPHFWAECDAGGREGSF gi|187 LQGRAQELLLQSQRAQEHSSRLQAEKSVLEIQGQELHRKLEVLEEEVRAARQSQEETRGQ 1020 1030 1040 1050 1060 1070 >>gi|114647365|ref|XP_508899.2| PREDICTED: similar to FL (562 aa) initn: 1869 init1: 1869 opt: 1883 Z-score: 1261.2 bits: 243.5 E(): 1.5e-61 Smith-Waterman score: 1883; 88.529% identity (92.353% similar) in 340 aa overlap (24-363:131-467) 10 20 30 40 50 FLJ001 TQCSRHQLSVPRHLIQTHRRQRVPFRQLPWTPRPQTGPRQESGSPVETQESPE :.. :. . :::::::::::::: gi|114 RRRVTYKTPEWQQVMKYTQAPDSDPQEAESPLQAAAMDPQASEWSPQESGSPVETQESPE 110 120 130 140 150 160 60 70 80 90 100 110 FLJ001 KAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKP :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: gi|114 KAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEARGLRQEGPEHKP 170 180 190 200 210 220 120 130 140 150 160 170 FLJ001 GPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQV ::::::::::::::::::::::::::::::::::::::::: :::::::::::::::::: gi|114 GPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRVPAWQKPQQKSEGALEVQV 230 240 250 260 270 280 180 190 200 210 220 230 FLJ001 WEGPIPGESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELA :::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::: gi|114 WEGPIPGESLASGVAEQEALREEVAQLRRKAEALGDELEAQACKLEAQNTEAARLSKELA 290 300 310 320 330 340 240 250 260 270 280 290 FLJ001 QARRAEAEAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWER :::::::::::::::.:::::::::::::::.:::::::::::::::::::::::::::: gi|114 QARRAEAEAHREAEAKAWEQARLREAVEAAGRELESASQEREALVEALAAAGRERRQWER 350 360 370 380 390 400 300 310 320 330 340 350 FLJ001 EGSRLRAQSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEH :::::::::::::::::::::::::::::::::::::::::: :. . : ::: . gi|114 EGSRLRAQSEAAEERMQVLESEGRQHLEEAERERREKEALQASLN-SYNDGDYEGAR--R 410 420 430 440 450 360 370 380 390 400 410 FLJ001 LQRELEQAALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEE : :. . .:. gi|114 LGRNAKWVAIASIIIGLLIIGISCAVHFTRKIREDALLSPITLKLLDHGETGENAEEQSL 460 470 480 490 500 510 >>gi|109109512|ref|XP_001114517.1| PREDICTED: similar to (598 aa) initn: 1752 init1: 1752 opt: 1758 Z-score: 1178.3 bits: 228.2 E(): 6.3e-57 Smith-Waterman score: 1758; 88.141% identity (93.269% similar) in 312 aa overlap (24-335:287-598) 10 20 30 40 50 FLJ001 TQCSRHQLSVPRHLIQTHRRQRVPFRQLPWTPRPQTGPRQESGSPVETQESPE :.. :. . ::: ::::::::: gi|109 NLASPASDSVLKGSAECPQAPDSDPQEAESPLQAATVDPQASDWSPQESDCPVETQESPE 260 270 280 290 300 310 60 70 80 90 100 110 FLJ001 KAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEAWGLRQEGPEHKP ::: :::::::::::::::::::::::::::::::::::::::::::: ::::: ::::: gi|109 KAGCRSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEARGLRQEDPEHKP 320 330 340 350 360 370 120 130 140 150 160 170 FLJ001 GPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQRLEGTVRDPAWQKPQQKSEGALEVQV :::::::::::.:::::::::::::.::::::::::: : .:::::::::::::::::. gi|109 RPSEPSSVQLEEREGPNQGLDLATGQTEAREHDQRLEGMVGNPAWQKPQQKSEGALEVQA 380 390 400 410 420 430 180 190 200 210 220 230 FLJ001 WEGPIPGESLASGVAEQEALREEVAQLRRKAEALGDELEAQARKLEAQNTEAARLSKELA ::::. :::::::::::::::.::::::::::::: ::::::::::::. :::::::::: gi|109 WEGPVTGESLASGVAEQEALRKEVAQLRRKAEALGAELEAQARKLEAQDMEAARLSKELA 440 450 460 470 480 490 240 250 260 270 280 290 FLJ001 QARRAEAEAHREAEAQAWEQARLREAVEAAGQELESASQEREALVEALAAAGRERRQWER :::::::::::::::::::::::.:::::::.:::.:::::::::::::.:::::::::: gi|109 QARRAEAEAHREAEAQAWEQARLQEAVEAAGRELEAASQEREALVEALASAGRERRQWER 500 510 520 530 540 550 300 310 320 330 340 350 FLJ001 EGSRLRAQSEAAEERMQVLESEGRQHLEEAERERREKEALQAELEKAVVRGKELGARLEH :::::::::::::::::.:::::::::::::::::::::::: gi|109 EGSRLRAQSEAAEERMQALESEGRQHLEEAERERREKEALQA 560 570 580 590 360 370 380 390 400 410 FLJ001 LQRELEQAALERQEFLREKESQHQRYQGLEQRLEAELQAAATSKEEALMELKTRALQLEE 677 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 19:20:11 2009 done: Fri Feb 27 19:27:57 2009 Total Scan time: 1030.630 Total Display time: 0.220 Function used was FASTA [version 34.26.5 April 26, 2007]