# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj03652.fasta.nr -Q ../query/FLJ00332.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00332, 201 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7825208 sequences Expectation_n fit: rho(ln(x))= 4.9267+/-0.000183; mu= 10.2383+/- 0.010 mean_var=71.9022+/-13.852, 0's: 37 Z-trim: 53 B-trim: 0 in 0/66 Lambda= 0.151253 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|28273126|dbj|BAC56926.1| FLJ00332 protein [Homo ( 201) 1461 327.0 1.2e-87 gi|119595021|gb|EAW74615.1| TBC1 domain family, me ( 241) 442 104.7 1.1e-20 gi|119595020|gb|EAW74614.1| TBC1 domain family, me ( 398) 442 104.9 1.7e-20 gi|109105208|ref|XP_001106367.1| PREDICTED: simila ( 446) 442 104.9 1.8e-20 gi|74728014|sp|Q8IV04.1|TB10C_HUMAN RecName: Full= ( 446) 442 104.9 1.8e-20 gi|194218529|ref|XP_001917525.1| PREDICTED: TBC1 d ( 446) 426 101.5 2e-19 gi|151555954|gb|AAI49745.1| TBC1D10C protein [Bos ( 353) 424 100.9 2.3e-19 gi|73982839|ref|XP_851990.1| PREDICTED: similar to ( 446) 420 100.1 5e-19 gi|148701081|gb|EDL33028.1| TBC1 domain family, me ( 276) 417 99.3 5.5e-19 gi|149061961|gb|EDM12384.1| similar to DKFZP434P17 ( 446) 406 97.1 4.2e-18 gi|26344644|dbj|BAC35971.1| unnamed protein produc ( 382) 405 96.8 4.3e-18 gi|81899517|sp|Q8C9V1.1|TB10C_MOUSE RecName: Full= ( 444) 405 96.9 4.8e-18 gi|119595018|gb|EAW74612.1| TBC1 domain family, me ( 220) 382 91.6 9.3e-17 gi|73982837|ref|XP_864754.1| PREDICTED: similar to ( 438) 379 91.2 2.4e-16 gi|47847510|dbj|BAD21427.1| mFLJ00332 protein [Mus ( 439) 320 78.3 1.8e-12 gi|47209521|emb|CAF90290.1| unnamed protein produc ( 404) 289 71.5 1.9e-10 gi|15076925|gb|AAK82984.1|AF285112_1 unknown WZ3-8 ( 537) 286 71.0 3.7e-10 gi|81896125|sp|Q8BHL3.1|TB10B_MOUSE RecName: Full= ( 537) 286 71.0 3.7e-10 gi|119572642|gb|EAW52257.1| TBC1 domain family, me ( 352) 283 70.2 4.2e-10 gi|34193836|gb|AAH50523.2| TBC1D10B protein [Homo ( 385) 283 70.2 4.5e-10 gi|33341670|gb|AAQ15206.1|AF370370_1 FP2461 [Homo ( 386) 283 70.2 4.5e-10 gi|73958438|ref|XP_547055.2| PREDICTED: similar to ( 389) 283 70.2 4.5e-10 gi|167614490|ref|NP_653105.3| TBC1 domain family, ( 798) 286 71.1 4.9e-10 gi|148685561|gb|EDL17508.1| TBC1 domain family, me ( 817) 286 71.1 5e-10 gi|119572643|gb|EAW52258.1| TBC1 domain family, me ( 471) 283 70.3 5.2e-10 gi|114662035|ref|XP_001152676.1| PREDICTED: hypoth ( 471) 283 70.3 5.2e-10 gi|166227892|sp|Q4KMP7.2|TB10B_HUMAN RecName: Full ( 533) 283 70.3 5.7e-10 gi|114662033|ref|XP_510925.2| PREDICTED: TBC1 doma ( 810) 285 70.9 5.8e-10 gi|38648805|gb|AAH63112.1| TBC1D10B protein [Homo ( 622) 283 70.4 6.4e-10 gi|222079994|dbj|BAH16638.1| TBC1 domain family, m ( 653) 283 70.4 6.7e-10 gi|68534049|gb|AAH98419.1| TBC1D10B protein [Homo ( 668) 283 70.4 6.8e-10 gi|126334630|ref|XP_001371043.1| PREDICTED: simila ( 685) 283 70.4 6.9e-10 gi|194219046|ref|XP_001501570.2| PREDICTED: TBC1 d ( 763) 283 70.4 7.5e-10 gi|109128222|ref|XP_001100532.1| PREDICTED: simila ( 788) 283 70.5 7.7e-10 gi|149067755|gb|EDM17307.1| TBC1 domain family, me ( 795) 283 70.5 7.7e-10 gi|167614488|ref|NP_056342.3| TBC1 domain family, ( 808) 283 70.5 7.8e-10 gi|156218504|gb|EDO39400.1| predicted protein [Nem ( 303) 278 69.0 8e-10 gi|194678420|ref|XP_591615.4| PREDICTED: similar t ( 860) 283 70.5 8.2e-10 gi|194043214|ref|XP_001929232.1| PREDICTED: simila ( 511) 273 68.1 2.5e-09 gi|220678579|emb|CAX12860.1| novel protein similar ( 478) 272 67.9 2.8e-09 gi|68437543|ref|XP_691101.1| PREDICTED: similar to ( 479) 272 67.9 2.8e-09 gi|47217810|emb|CAG07224.1| unnamed protein produc ( 885) 274 68.5 3.3e-09 gi|60359898|dbj|BAD90168.1| mFLJ00288 protein [Mus ( 329) 267 66.6 4.5e-09 gi|154426130|gb|AAI51383.1| TBC1D10A protein [Bos ( 506) 269 67.2 4.6e-09 gi|20988234|gb|AAH29773.1| Tbc1d10a protein [Mus m ( 374) 267 66.7 4.9e-09 gi|215495401|gb|EEC05042.1| RAB GTPase-activating ( 383) 266 66.5 5.9e-09 gi|194214109|ref|XP_001495088.2| PREDICTED: TBC1 d ( 483) 267 66.8 6e-09 gi|34526517|dbj|BAC85136.1| FLJ00288 protein [Homo ( 217) 263 65.6 6e-09 gi|23337074|gb|AAH37230.1| TBC1 domain family, mem ( 500) 267 66.8 6.1e-09 gi|74183856|dbj|BAE24505.1| unnamed protein produc ( 500) 267 66.8 6.1e-09 >>gi|28273126|dbj|BAC56926.1| FLJ00332 protein [Homo sap (201 aa) initn: 1461 init1: 1461 opt: 1461 Z-score: 1730.1 bits: 327.0 E(): 1.2e-87 Smith-Waterman score: 1461; 100.000% identity (100.000% similar) in 201 aa overlap (1-201:1-201) 10 20 30 40 50 60 FLJ003 WTWPQEAVRLDAEVFMALLRRLLPHVHKHLQQVGVGPLLYLPEWFLCLFARSLPFPTVLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|282 WTWPQEAVRLDAEVFMALLRRLLPHVHKHLQQVGVGPLLYLPEWFLCLFARSLPFPTVLR 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 VWDAFLSEGEWGSQWLGQEPWGVGGEVAHQLQGSLFEPQITGLGVPKVMAWCLALHHPSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|282 VWDAFLSEGEWGSQWLGQEPWGVGGEVAHQLQGSLFEPQITGLGVPKVMAWCLALHHPSP 70 80 90 100 110 120 130 140 150 160 170 180 FLJ003 ITQAPPGAELGQGGFQRRQMGQEQGDHSTWRPELLRDSRRRSSPEPAGTCWVLTGSRRGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|282 ITQAPPGAELGQGGFQRRQMGQEQGDHSTWRPELLRDSRRRSSPEPAGTCWVLTGSRRGS 130 140 150 160 170 180 190 200 FLJ003 AAGNQVIETFNSGGGGDGWRQ ::::::::::::::::::::: gi|282 AAGNQVIETFNSGGGGDGWRQ 190 200 >>gi|119595021|gb|EAW74615.1| TBC1 domain family, member (241 aa) initn: 442 init1: 442 opt: 442 Z-score: 527.3 bits: 104.7 E(): 1.1e-20 Smith-Waterman score: 442; 100.000% identity (100.000% similar) in 64 aa overlap (6-69:12-75) 10 20 30 40 50 FLJ003 WTWPQEAVRLDAEVFMALLRRLLPHVHKHLQQVGVGPLLYLPEWFLCLFARSLP ::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MGAGGRRGRGPEAVRLDAEVFMALLRRLLPHVHKHLQQVGVGPLLYLPEWFLCLFARSLP 10 20 30 40 50 60 60 70 80 90 100 110 FLJ003 FPTVLRVWDAFLSEGEWGSQWLGQEPWGVGGEVAHQLQGSLFEPQITGLGVPKVMAWCLA ::::::::::::::: gi|119 FPTVLRVWDAFLSEGARVLFRVGLTLVRLALGTAEQRGACPGLLETLGALRAIPPAQLQE 70 80 90 100 110 120 >>gi|119595020|gb|EAW74614.1| TBC1 domain family, member (398 aa) initn: 442 init1: 442 opt: 442 Z-score: 524.4 bits: 104.9 E(): 1.7e-20 Smith-Waterman score: 442; 100.000% identity (100.000% similar) in 64 aa overlap (6-69:169-232) 10 20 30 FLJ003 WTWPQEAVRLDAEVFMALLRRLLPHVHKHLQQVGV :::::::::::::::::::::::::::::: gi|119 LLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVRLDAEVFMALLRRLLPHVHKHLQQVGV 140 150 160 170 180 190 40 50 60 70 80 90 FLJ003 GPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEGEWGSQWLGQEPWGVGGEVAHQLQGSL :::::::::::::::::::::::::::::::::: gi|119 GPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEGARVLFRVGLTLVRLALGTAEQRGACP 200 210 220 230 240 250 100 110 120 130 140 150 FLJ003 FEPQITGLGVPKVMAWCLALHHPSPITQAPPGAELGQGGFQRRQMGQEQGDHSTWRPELL gi|119 GLLETLGALRAIPPAQLQEEAFMSQVHSVVLSERDLQREIKAQLAQLPDSAPGPPPRPQV 260 270 280 290 300 310 >>gi|109105208|ref|XP_001106367.1| PREDICTED: similar to (446 aa) initn: 466 init1: 442 opt: 442 Z-score: 523.7 bits: 104.9 E(): 1.8e-20 Smith-Waterman score: 442; 100.000% identity (100.000% similar) in 64 aa overlap (6-69:217-280) 10 20 30 FLJ003 WTWPQEAVRLDAEVFMALLRRLLPHVHKHLQQVGV :::::::::::::::::::::::::::::: gi|109 LLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVRLDAEVFMALLRRLLPHVHKHLQQVGV 190 200 210 220 230 240 40 50 60 70 80 90 FLJ003 GPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEGEWGSQWLGQEPWGVGGEVAHQLQGSL :::::::::::::::::::::::::::::::::: gi|109 GPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEGAKVLFRVGLTLVRLALGTAEQRGACP 250 260 270 280 290 300 100 110 120 130 140 150 FLJ003 FEPQITGLGVPKVMAWCLALHHPSPITQAPPGAELGQGGFQRRQMGQEQGDHSTWRPELL gi|109 GLLETLGALRAIPPAQLQEEAFMSQVHNVVLSERDLQREIKAQLAQLPDSAPGPPPRPQV 310 320 330 340 350 360 >>gi|74728014|sp|Q8IV04.1|TB10C_HUMAN RecName: Full=Cara (446 aa) initn: 442 init1: 442 opt: 442 Z-score: 523.7 bits: 104.9 E(): 1.8e-20 Smith-Waterman score: 442; 100.000% identity (100.000% similar) in 64 aa overlap (6-69:217-280) 10 20 30 FLJ003 WTWPQEAVRLDAEVFMALLRRLLPHVHKHLQQVGV :::::::::::::::::::::::::::::: gi|747 LLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVRLDAEVFMALLRRLLPHVHKHLQQVGV 190 200 210 220 230 240 40 50 60 70 80 90 FLJ003 GPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEGEWGSQWLGQEPWGVGGEVAHQLQGSL :::::::::::::::::::::::::::::::::: gi|747 GPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEGARVLFRVGLTLVRLALGTAEQRGACP 250 260 270 280 290 300 100 110 120 130 140 150 FLJ003 FEPQITGLGVPKVMAWCLALHHPSPITQAPPGAELGQGGFQRRQMGQEQGDHSTWRPELL gi|747 GLLETLGALRAIPPAQLQEEAFMSQVHSVVLSERDLQREIKAQLAQLPDSAPGPPPRPQV 310 320 330 340 350 360 >>gi|194218529|ref|XP_001917525.1| PREDICTED: TBC1 domai (446 aa) initn: 448 init1: 426 opt: 426 Z-score: 504.9 bits: 101.5 E(): 2e-19 Smith-Waterman score: 426; 96.875% identity (100.000% similar) in 64 aa overlap (6-69:217-280) 10 20 30 FLJ003 WTWPQEAVRLDAEVFMALLRRLLPHVHKHLQQVGV :::.:::::::::::::::.:::::::::: gi|194 LLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVQLDAEVFMALLRRLLPRVHKHLQQVGV 190 200 210 220 230 240 40 50 60 70 80 90 FLJ003 GPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEGEWGSQWLGQEPWGVGGEVAHQLQGSL :::::::::::::::::::::::::::::::::: gi|194 GPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEGVKVLFRVGLTLVRLALGTAEQRLACP 250 260 270 280 290 300 100 110 120 130 140 150 FLJ003 FEPQITGLGVPKVMAWCLALHHPSPITQAPPGAELGQGGFQRRQMGQEQGDHSTWRPELL gi|194 GLLETLGALRTIPPAQLQEEAFMSQVHSVALSEHDLQRQIRAQLAQLPESASGPPPRPQA 310 320 330 340 350 360 >>gi|151555954|gb|AAI49745.1| TBC1D10C protein [Bos taur (353 aa) initn: 419 init1: 419 opt: 424 Z-score: 503.9 bits: 100.9 E(): 2.3e-19 Smith-Waterman score: 424; 86.301% identity (93.151% similar) in 73 aa overlap (6-78:217-286) 10 20 30 FLJ003 WTWPQEAVRLDAEVFMALLRRLLPHVHKHLQQVGV :::::::::::::::::::.::::::.::: gi|151 LLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVRLDAEVFMALLRRLLPRVHKHLQKVGV 190 200 210 220 230 240 40 50 60 70 80 90 FLJ003 GPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEGEWGSQWLGQEPWGVGGEVAHQLQGSL :::::::::::::::::::::::::::::::::. .: :. gi|151 GPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEAL---HWTGRGAEAQNEKACVRLSAAL 250 260 270 280 290 300 100 110 120 130 140 150 FLJ003 FEPQITGLGVPKVMAWCLALHHPSPITQAPPGAELGQGGFQRRQMGQEQGDHSTWRPELL gi|151 GSWQAALPTSVRGCWDLLAGAPKWPTCSQSRQQSCRRVEGVWPRTGSGPG 310 320 330 340 350 >>gi|73982839|ref|XP_851990.1| PREDICTED: similar to TBC (446 aa) initn: 442 init1: 420 opt: 420 Z-score: 497.8 bits: 100.1 E(): 5e-19 Smith-Waterman score: 420; 95.312% identity (98.438% similar) in 64 aa overlap (6-69:217-280) 10 20 30 FLJ003 WTWPQEAVRLDAEVFMALLRRLLPHVHKHLQQVGV :::.:::::::::::::::.:::::::::: gi|739 LLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVQLDAEVFMALLRRLLPRVHKHLQQVGV 190 200 210 220 230 240 40 50 60 70 80 90 FLJ003 GPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEGEWGSQWLGQEPWGVGGEVAHQLQGSL ::::::::::::::::::::: :::::::::::: gi|739 GPLLYLPEWFLCLFARSLPFPIVLRVWDAFLSEGVKVLFRVGLTLVRLALGTTEQRLACP 250 260 270 280 290 300 100 110 120 130 140 150 FLJ003 FEPQITGLGVPKVMAWCLALHHPSPITQAPPGAELGQGGFQRRQMGQEQGDHSTWRPELL gi|739 GLLETLGALRAIPPTQLQEEVFMSQVHSMALSEQDLQREIRVQLARLPESTSGPPPRPQA 310 320 330 340 350 360 >>gi|148701081|gb|EDL33028.1| TBC1 domain family, member (276 aa) initn: 417 init1: 417 opt: 417 Z-score: 497.0 bits: 99.3 E(): 5.5e-19 Smith-Waterman score: 417; 89.394% identity (98.485% similar) in 66 aa overlap (4-69:45-110) 10 20 30 FLJ003 WTWPQEAVRLDAEVFMALLRRLLPHVHKHLQQV :.:::.:::::::::::: ::.:.:::::: gi|148 VLKAYTLYRPEQGYCQAQGPVAAVLLMHLPPEEAVQLDAEVFMALLRRQLPRVYKHLQQV 20 30 40 50 60 70 40 50 60 70 80 90 FLJ003 GVGPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEGEWGSQWLGQEPWGVGGEVAHQLQG ::::::::::::::::.::::::::::.:::::::: gi|148 GVGPLLYLPEWFLCLFTRSLPFPTVLRIWDAFLSEGAKVLFRVGLTLMRLALGTVEQRTA 80 90 100 110 120 130 100 110 120 130 140 150 FLJ003 SLFEPQITGLGVPKVMAWCLALHHPSPITQAPPGAELGQGGFQRRQMGQEQGDHSTWRPE gi|148 CPGLLETLGALRAIPPTQLQEEVFMSQVHSVTLSERVLQQEIRIQLAQLSKSLPGPAPLP 140 150 160 170 180 190 >>gi|149061961|gb|EDM12384.1| similar to DKFZP434P1750 p (446 aa) initn: 406 init1: 406 opt: 406 Z-score: 481.3 bits: 97.1 E(): 4.2e-18 Smith-Waterman score: 406; 90.625% identity (98.438% similar) in 64 aa overlap (6-69:217-280) 10 20 30 FLJ003 WTWPQEAVRLDAEVFMALLRRLLPHVHKHLQQVGV :::.:::::::::::::::.:.:::::::: gi|149 LLMHLPPEEAFWCLVQICEVYLPGYYGPHMEAVQLDAEVFMALLRRLLPRVYKHLQQVGV 190 200 210 220 230 240 40 50 60 70 80 90 FLJ003 GPLLYLPEWFLCLFARSLPFPTVLRVWDAFLSEGEWGSQWLGQEPWGVGGEVAHQLQGSL ::::::::::::::.:::::: :::.:::::::: gi|149 GPLLYLPEWFLCLFTRSLPFPIVLRIWDAFLSEGAKVLFRAGLTLMRLALGTVEQRTACP 250 260 270 280 290 300 100 110 120 130 140 150 FLJ003 FEPQITGLGVPKVMAWCLALHHPSPITQAPPGAELGQGGFQRRQMGQEQGDHSTWRPELL gi|149 GLLETLGALRTIPPTQLQEEVFMSQVHNVALSERDLQREIRIQLAQLPKSSPGPVPLPQA 310 320 330 340 350 360 201 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 16:04:46 2009 done: Fri Feb 27 16:09:27 2009 Total Scan time: 667.570 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]