# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj03670.fasta.nr -Q ../query/FLJ00200.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00200, 122 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827052 sequences Expectation_n fit: rho(ln(x))= 4.6539+/-0.000184; mu= 9.0313+/- 0.010 mean_var=70.0714+/-13.347, 0's: 49 Z-trim: 52 B-trim: 0 in 0/66 Lambda= 0.153216 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|18676604|dbj|BAB84954.1| FLJ00200 protein [Homo ( 122) 859 197.6 3.7e-49 gi|114639297|ref|XP_001174786.1| PREDICTED: simila ( 430) 616 144.4 1.4e-32 gi|21264101|sp|Q9N092.1|TR19L_MACFA RecName: Full= ( 430) 616 144.4 1.4e-32 gi|37589953|gb|AAH51810.2| RELT tumor necrosis fac ( 430) 616 144.4 1.4e-32 gi|21264092|sp|Q969Z4.1|TR19L_HUMAN RecName: Full= ( 430) 616 144.4 1.4e-32 gi|109107728|ref|XP_001110447.1| PREDICTED: simila ( 440) 616 144.4 1.4e-32 gi|119595301|gb|EAW74895.1| tumor necrosis factor ( 457) 616 144.5 1.4e-32 gi|114639295|ref|XP_001174800.1| PREDICTED: simila ( 486) 616 144.5 1.5e-32 gi|14042909|dbj|BAB55441.1| unnamed protein produc ( 430) 611 143.3 2.9e-32 gi|119595303|gb|EAW74897.1| tumor necrosis factor ( 207) 603 141.3 5.9e-32 gi|73988181|ref|XP_542318.2| PREDICTED: similar to ( 438) 569 134.1 1.8e-29 gi|148684533|gb|EDL16480.1| mCG2865, isoform CRA_b ( 429) 556 131.2 1.3e-28 gi|67462067|sp|Q8BX43|TR19L_MOUSE Tumor necrosis f ( 436) 556 131.2 1.3e-28 gi|26353658|dbj|BAC40459.1| unnamed protein produc ( 436) 556 131.2 1.3e-28 gi|149068760|gb|EDM18312.1| tumor necrosis factor ( 315) 547 129.1 4.2e-28 gi|149068759|gb|EDM18311.1| tumor necrosis factor ( 427) 547 129.2 5.3e-28 gi|148684534|gb|EDL16481.1| mCG2865, isoform CRA_c ( 284) 543 128.1 7.3e-28 gi|148684532|gb|EDL16479.1| mCG2865, isoform CRA_a ( 317) 543 128.2 7.9e-28 gi|95768566|gb|ABF57364.1| tumor necrosis factor r ( 359) 538 127.1 1.8e-27 gi|194673367|ref|XP_582052.3| PREDICTED: RELT tumo ( 717) 538 127.4 3e-27 gi|194213463|ref|XP_001917488.1| PREDICTED: simila ( 503) 514 122.0 9.3e-26 gi|148692322|gb|EDL24269.1| mCG62734 [Mus musculus ( 355) 417 100.4 2.1e-19 gi|126327928|ref|XP_001368574.1| PREDICTED: simila ( 442) 347 85.0 1.1e-14 gi|47214868|emb|CAG00916.1| unnamed protein produc ( 163) 265 66.5 1.5e-09 gi|42542885|gb|AAH66389.1| RELT tumor necrosis fac ( 401) 255 64.6 1.4e-08 gi|94732960|emb|CAK04232.1| novel protein similar ( 392) 250 63.5 2.9e-08 gi|126331835|ref|XP_001374553.1| PREDICTED: hypoth ( 282) 198 51.9 6.5e-05 gi|47212992|emb|CAF96695.1| unnamed protein produc ( 281) 189 49.9 0.00026 gi|149703074|ref|XP_001495742.1| PREDICTED: simila ( 310) 184 48.8 0.0006 gi|73951892|ref|XP_536264.2| PREDICTED: hypothetic ( 271) 183 48.5 0.00063 gi|114593633|ref|XP_517142.2| PREDICTED: hypotheti ( 244) 182 48.3 0.00069 gi|90077128|dbj|BAE88244.1| unnamed protein produc ( 271) 182 48.3 0.00074 gi|22761573|dbj|BAC11638.1| unnamed protein produc ( 271) 182 48.3 0.00074 gi|74727997|sp|Q8IUW5.1|RELL1_HUMAN RecName: Full= ( 271) 182 48.3 0.00074 gi|160773081|gb|AAI55012.1| LOC100127768 protein [ ( 283) 182 48.3 0.00076 gi|149640676|ref|XP_001513162.1| PREDICTED: hypoth ( 269) 180 47.9 0.001 gi|56788760|gb|AAH88389.1| LOC553285 protein [Dani ( 280) 179 47.7 0.0012 gi|141795666|gb|AAI39641.1| Unknown (protein for I ( 287) 177 47.2 0.0017 gi|122132322|sp|Q08DP3.1|RELL1_BOVIN RecName: Full ( 271) 175 46.8 0.0022 gi|115313503|gb|AAI24130.1| LOC799556 protein [Dan ( 282) 175 46.8 0.0022 gi|94574463|gb|AAI16535.1| LOC553285 protein [Dani ( 287) 175 46.8 0.0022 gi|82075024|sp|Q5F3A4.1|RELL1_CHICK RecName: Full= ( 288) 173 46.4 0.0031 gi|123796804|sp|Q8K2J7.2|RELL1_MOUSE RecName: Full ( 272) 171 45.9 0.004 gi|165971322|gb|AAI58873.1| Rell1 protein [Rattus ( 272) 171 45.9 0.004 >>gi|18676604|dbj|BAB84954.1| FLJ00200 protein [Homo sap (122 aa) initn: 859 init1: 859 opt: 859 Z-score: 1038.7 bits: 197.6 E(): 3.7e-49 Smith-Waterman score: 859; 100.000% identity (100.000% similar) in 122 aa overlap (1-122:1-122) 10 20 30 40 50 60 FLJ002 CSEWGRRARRGVEVAAGASSGGETRQPGNGTRAGGPEETAAQYAVIAIVPVFCLMGLLGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 CSEWGRRARRGVEVAAGASSGGETRQPGNGTRAGGPEETAAQYAVIAIVPVFCLMGLLGI 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 LVCNLLKRKGYHCTAHKEVGPGPGGGGSGEAQLGSRWEGRGHEPSPSSTWGLPAESCLAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 LVCNLLKRKGYHCTAHKEVGPGPGGGGSGEAQLGSRWEGRGHEPSPSSTWGLPAESCLAS 70 80 90 100 110 120 FLJ002 GV :: gi|186 GV >>gi|114639297|ref|XP_001174786.1| PREDICTED: similar to (430 aa) initn: 651 init1: 616 opt: 616 Z-score: 741.4 bits: 144.4 E(): 1.4e-32 Smith-Waterman score: 616; 98.876% identity (100.000% similar) in 89 aa overlap (1-89:121-209) 10 20 30 FLJ002 CSEWGRRARRGVEVAAGASSGGETRQPGNG :.:::::::::::::::::::::::::::: gi|114 GDCWPGWFGPWGVPRIPCQPCSWAPLGTHGCDEWGRRARRGVEVAAGASSGGETRQPGNG 100 110 120 130 140 150 40 50 60 70 80 90 FLJ002 TRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGI 160 170 180 190 200 210 100 110 120 FLJ002 AQLGSRWEGRGHEPSPSSTWGLPAESCLASGV gi|114 NPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVSKLPPAPPN 220 230 240 250 260 270 >>gi|21264101|sp|Q9N092.1|TR19L_MACFA RecName: Full=Tumo (430 aa) initn: 651 init1: 616 opt: 616 Z-score: 741.4 bits: 144.4 E(): 1.4e-32 Smith-Waterman score: 616; 98.876% identity (100.000% similar) in 89 aa overlap (1-89:121-209) 10 20 30 FLJ002 CSEWGRRARRGVEVAAGASSGGETRQPGNG :.:::::::::::::::::::::::::::: gi|212 GDCWPGWFGPWGVPRVPCQPCSWAPLGIHGCDEWGRRARRGVEVAAGASSGGETRQPGNG 100 110 120 130 140 150 40 50 60 70 80 90 FLJ002 TRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|212 TRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGI 160 170 180 190 200 210 100 110 120 FLJ002 AQLGSRWEGRGHEPSPSSTWGLPAESCLASGV gi|212 NPAYRTEDVNEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVSKLPPAPPN 220 230 240 250 260 270 >>gi|37589953|gb|AAH51810.2| RELT tumor necrosis factor (430 aa) initn: 651 init1: 616 opt: 616 Z-score: 741.4 bits: 144.4 E(): 1.4e-32 Smith-Waterman score: 616; 98.876% identity (100.000% similar) in 89 aa overlap (1-89:121-209) 10 20 30 FLJ002 CSEWGRRARRGVEVAAGASSGGETRQPGNG :.:::::::::::::::::::::::::::: gi|375 GDCWPGWFGPWGVPRVPCQPCSWAPLGTHGCDEWGRRARRGVEVAAGASSGGETRQPGNG 100 110 120 130 140 150 40 50 60 70 80 90 FLJ002 TRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|375 TRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGI 160 170 180 190 200 210 100 110 120 FLJ002 AQLGSRWEGRGHEPSPSSTWGLPAESCLASGV gi|375 NPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVSKLPPAPPN 220 230 240 250 260 270 >>gi|21264092|sp|Q969Z4.1|TR19L_HUMAN RecName: Full=Tumo (430 aa) initn: 651 init1: 616 opt: 616 Z-score: 741.4 bits: 144.4 E(): 1.4e-32 Smith-Waterman score: 616; 98.876% identity (100.000% similar) in 89 aa overlap (1-89:121-209) 10 20 30 FLJ002 CSEWGRRARRGVEVAAGASSGGETRQPGNG :.:::::::::::::::::::::::::::: gi|212 GDCWPGWFGPWGVPRVPCQPCSWAPLGTHGCDEWGRRARRGVEVAAGASSGGETRQPGNG 100 110 120 130 140 150 40 50 60 70 80 90 FLJ002 TRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|212 TRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGI 160 170 180 190 200 210 100 110 120 FLJ002 AQLGSRWEGRGHEPSPSSTWGLPAESCLASGV gi|212 NPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVSKLPPAPPN 220 230 240 250 260 270 >>gi|109107728|ref|XP_001110447.1| PREDICTED: similar to (440 aa) initn: 651 init1: 616 opt: 616 Z-score: 741.3 bits: 144.4 E(): 1.4e-32 Smith-Waterman score: 616; 98.876% identity (100.000% similar) in 89 aa overlap (1-89:131-219) 10 20 30 FLJ002 CSEWGRRARRGVEVAAGASSGGETRQPGNG :.:::::::::::::::::::::::::::: gi|109 LASTIRWFGPWGVPRVPCQPCSWAPLGIHGCDEWGRRARRGVEVAAGASSGGETRQPGNG 110 120 130 140 150 160 40 50 60 70 80 90 FLJ002 TRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGI 170 180 190 200 210 220 100 110 120 FLJ002 AQLGSRWEGRGHEPSPSSTWGLPAESCLASGV gi|109 NPAYRTEDVNEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVSKLPPAPPN 230 240 250 260 270 280 >>gi|119595301|gb|EAW74895.1| tumor necrosis factor rece (457 aa) initn: 651 init1: 616 opt: 616 Z-score: 741.0 bits: 144.5 E(): 1.4e-32 Smith-Waterman score: 616; 98.876% identity (100.000% similar) in 89 aa overlap (1-89:148-236) 10 20 30 FLJ002 CSEWGRRARRGVEVAAGASSGGETRQPGNG :.:::::::::::::::::::::::::::: gi|119 GDCWPGWFGPWGVPRVPCQPCSWAPLGTHGCDEWGRRARRGVEVAAGASSGGETRQPGNG 120 130 140 150 160 170 40 50 60 70 80 90 FLJ002 TRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGI 180 190 200 210 220 230 100 110 120 FLJ002 AQLGSRWEGRGHEPSPSSTWGLPAESCLASGV gi|119 NPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVSKLPPAPPN 240 250 260 270 280 290 >>gi|114639295|ref|XP_001174800.1| PREDICTED: similar to (486 aa) initn: 651 init1: 616 opt: 616 Z-score: 740.7 bits: 144.5 E(): 1.5e-32 Smith-Waterman score: 616; 98.876% identity (100.000% similar) in 89 aa overlap (1-89:177-265) 10 20 30 FLJ002 CSEWGRRARRGVEVAAGASSGGETRQPGNG :.:::::::::::::::::::::::::::: gi|114 GDCWPGWFGPWGVPRIPCQPCSWAPLGTHGCDEWGRRARRGVEVAAGASSGGETRQPGNG 150 160 170 180 190 200 40 50 60 70 80 90 FLJ002 TRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGI 210 220 230 240 250 260 100 110 120 FLJ002 AQLGSRWEGRGHEPSPSSTWGLPAESCLASGV gi|114 NPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVSKLPPAPPN 270 280 290 300 310 320 >>gi|14042909|dbj|BAB55441.1| unnamed protein product [H (430 aa) initn: 646 init1: 611 opt: 611 Z-score: 735.4 bits: 143.3 E(): 2.9e-32 Smith-Waterman score: 611; 97.753% identity (100.000% similar) in 89 aa overlap (1-89:121-209) 10 20 30 FLJ002 CSEWGRRARRGVEVAAGASSGGETRQPGNG :.:::::::::::::::::::::::::::: gi|140 GDCWPGWFGPWGVPRVPCQPCSWAPLGTHGCDEWGRRARRGVEVAAGASSGGETRQPGNG 100 110 120 130 140 150 40 50 60 70 80 90 FLJ002 TRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGE ::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|140 TRAGGPEETAAQYAVIAIVPVFCLMGLLGILVCNLLERKGYHCTAHKEVGPGPGGGGSGI 160 170 180 190 200 210 100 110 120 FLJ002 AQLGSRWEGRGHEPSPSSTWGLPAESCLASGV gi|140 NPAYRTEDANEDTIGVLVRLITEKKENAAALEELLKEYHSKQLVQTSHRPVSKLPPAPPN 220 230 240 250 260 270 >>gi|119595303|gb|EAW74897.1| tumor necrosis factor rece (207 aa) initn: 638 init1: 603 opt: 603 Z-score: 729.9 bits: 141.3 E(): 5.9e-32 Smith-Waterman score: 603; 100.000% identity (100.000% similar) in 87 aa overlap (3-89:29-115) 10 20 30 FLJ002 CSEWGRRARRGVEVAAGASSGGETRQPGNGTRAG :::::::::::::::::::::::::::::::: gi|119 MPVAAFGGGWRPRWAWQLEIHSVETAGLEWGRRARRGVEVAAGASSGGETRQPGNGTRAG 10 20 30 40 50 60 40 50 60 70 80 90 FLJ002 GPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGEAQLG ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 GPEETAAQYAVIAIVPVFCLMGLLGILVCNLLKRKGYHCTAHKEVGPGPGGGGSGINPAY 70 80 90 100 110 120 100 110 120 FLJ002 SRWEGRGHEPSPSSTWGLPAESCLASGV gi|119 RTEDANEDTIGVLVRLITEKKATHRECCGPGGAAERVPQQTAGADEPQACVQAAASAPER 130 140 150 160 170 180 122 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 19:34:51 2009 done: Fri Feb 27 19:38:40 2009 Total Scan time: 546.530 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]