# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj04223.fasta.huge -Q ../query/FLJ00202.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00202, 233 aa vs ./tmplib.10216 library 2210761 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.8629+/-0.00376; mu= 17.7398+/- 0.254 mean_var=78.3765+/-17.279, 0's: 0 Z-trim: 1 B-trim: 59 in 1/39 Lambda= 0.144871 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1560 ( 662 res) fh19959 ( 662) 348 81.8 8.7e-17 KIAA1706 ( 573 res) fj17179 ( 573) 92 28.3 1 KIAA1624 ( 599 res) fg02331 ( 599) 87 27.2 2.2 KIAA0755 ( 1093 res) hk04532 (1093) 89 28.0 2.3 FLJ00183 ( 227 res) sj01602 ( 227) 82 25.6 2.6 KIAA0198 ( 562 res) ha02521 ( 562) 84 26.6 3.2 KIAA1783 ( 1560 res) fg01285 (1560) 87 27.8 3.7 FLJ00209 ( 358 res) sj05025 ( 358) 79 25.2 5.2 FLJ00324 ( 376 res) sj01157 ( 376) 79 25.3 5.3 FLJ00277 ( 357 res) sh01540 ( 357) 77 24.8 6.9 KIAA1278 ( 1311 res) hg03689(revised) (1311) 82 26.7 6.9 KIAA1845 ( 705 res) fg05317(revised) ( 705) 79 25.7 7.6 KIAA0212 ( 666 res) ha02602 ( 666) 77 25.2 9.8 FLJ00416 ( 221 res) sj04686 ( 221) 72 23.5 11 KIAA1208 ( 950 res) fj07955 ( 950) 77 25.4 12 FLJ00341 ( 2760 res) sf00005 (2760) 81 27.0 12 KIAA1270 ( 986 res) hk06471 ( 986) 77 25.5 12 KIAA0835 ( 1167 res) hj05861 (1167) 77 25.6 13 KIAA1388 ( 599 res) fj06552 ( 599) 74 24.5 14 KIAA0999 ( 1371 res) fj10213 (1371) 77 25.7 15 FLJ00184 ( 580 res) sj01836 ( 580) 73 24.3 16 KIAA2003 ( 460 res) ah02593 ( 460) 72 23.9 16 KIAA0612 ( 1810 res) hg00654s1 (1810) 77 25.8 17 KIAA0124 ( 682 res) ha01534 ( 682) 73 24.4 18 KIAA1042 ( 1019 res) fh02877 (1019) 74 24.9 19 FLJ00076 ( 298 res) as00076 ( 298) 69 23.0 20 KIAA0377 ( 1412 res) hh00412 (1412) 75 25.3 20 FLJ00246 ( 1486 res) sj08543 (1486) 75 25.3 21 KIAA1926 ( 412 res) hh10052 ( 412) 70 23.4 21 KIAA0872 ( 552 res) hk07213 ( 552) 71 23.8 21 KIAA1019 ( 2309 res) fg00188s1 (2309) 76 25.8 23 KIAA1422 ( 1151 res) hk10484(revised) (1151) 73 24.7 24 KIAA0018 ( 553 res) hk07284 ( 553) 70 23.6 24 KIAA1255 ( 1232 res) hh14633s1 (1232) 73 24.8 25 KIAA1351 ( 1243 res) fj01021s1 (1243) 73 24.8 25 KIAA1898 ( 1013 res) fk06427 (1013) 72 24.4 25 FLJ00169 ( 432 res) sh07709 ( 432) 68 23.1 28 KIAA0423 ( 1723 res) hh01239s1 (1723) 73 25.0 30 KIAA1741 ( 1777 res) fh23254 (1777) 73 25.0 30 KIAA1976 ( 351 res) fg02988 ( 351) 66 22.5 33 KIAA0707 ( 630 res) hh00286(revised) ( 630) 68 23.3 35 KIAA1400 ( 1093 res) hk08136 (1093) 70 24.1 35 KIAA0788 ( 2026 res) hk05526s2 (2026) 72 24.9 37 KIAA0360 ( 1019 res) hh00062s1 (1019) 69 23.8 39 KIAA1873 ( 477 res) hk07219 ( 477) 66 22.7 40 FLJ00207 ( 288 res) sj04935 ( 288) 64 22.0 40 FLJ00362 ( 638 res) sh04538 ( 638) 67 23.1 40 KIAA0732 ( 1449 res) fg05988b (1449) 70 24.2 41 FLJ00075 ( 183 res) as00075 ( 183) 62 21.3 41 KIAA1461 ( 1498 res) fh17578 (1498) 70 24.3 42 >>KIAA1560 ( 662 res) fh19959 (662 aa) initn: 262 init1: 223 opt: 348 Z-score: 394.7 bits: 81.8 E(): 8.7e-17 Smith-Waterman score: 348; 35.326% identity (66.848% similar) in 184 aa overlap (31-212:313-494) 10 20 30 40 50 60 FLJ002 EDLLDHGGTRLLGLNLTSISTPRPTPASVGSSAVMSTAIMATLLLFKHQKGVFLSQLLGE : :.::: :.: :::..:..:. :: :. . KIAA15 INESRNATDESLRRRLIANLAEHILFTASKSCAIMSTHIVACLLLYRHRQGIDLSTLVED 290 300 310 320 330 340 70 80 90 100 110 FLJ002 FSWLTEEILLRGFDVGFSGQLRSLLQHSLSLLRAHVALLRIRQGD-LLVVPQPG-PGLTH : . ::.: : ::.::::. .....:...:: :.. . ..: ....:. :.. . KIAA15 FFVMKEEVLARDFDLGFSGNSEDVVMHAIQLLGNCVTITHTSRNDEFFITPSTTVPSVFE 350 360 370 380 390 400 120 130 140 150 160 170 FLJ002 LAQLSAELLPVFLSEAVGACAVRGLLAGRVPPQGPWELQGILLLSQNELYRQILLLMHLL : : .: ::. ::. ::.. ..: : :: :. ::..: :. : .:: KIAA15 LNFYSNGVLHVFIMEAIIACSLYAVLNKR-GLGGPTSTPPNLI-SQEQLVRKAASLCYLL 410 420 430 440 450 460 180 190 200 210 220 230 FLJ002 PQDLLLLKPCQSSYCYCQEVLDRLIQCGLLVAEEVGRAVGDKILAWSLASSSLPP .. . :::. : :.:.. ..:: :.:.. : KIAA15 SNEGTISLPCQTFYQVCHETVGKFIQYGILTVAEHDDQEDISPSLAEQQWDKKLPEPLSW 470 480 490 500 510 520 KIAA15 RSDEEDEDSDFGEEQRDCYLKVSQSKEHQQFITFLQRLLGPLLEAYSSAAIFVHNFSGPV 530 540 550 560 570 580 >>KIAA1706 ( 573 res) fj17179 (573 aa) initn: 67 init1: 44 opt: 92 Z-score: 106.2 bits: 28.3 E(): 1 Smith-Waterman score: 92; 24.870% identity (49.741% similar) in 193 aa overlap (21-201:138-309) 10 20 30 40 FLJ002 EDLLDHGGTRLLGLNLTSISTPR-----PTPASVGSSAVMSTAIMATLLL ::: :::.. : .: . ... KIAA17 GSSAQHSPSSLRRDLLAEQQPHHLATAVPLTPRVNINTATPAQLMSVRGLSEKMALSIVD 110 120 130 140 150 160 50 60 70 80 90 100 FLJ002 FKHQKGVFLSQLLGEFSWLTEEILLRGFDVGFSGQLRSLLQHSLSLLRAHVALLRIRQGD :....: : : . . . . :....: ..: :.. :.. . .: KIAA17 FRREHGPFRS--------VEDLVRMDGINAAFLDRIR----HQVFAERSRPPSTHT-NGG 170 180 190 200 210 110 120 130 140 150 FLJ002 LLVVPQPGPGLTHLAQLSAEL-LPV-----FLSEAVGACAVRGLLAGR-VPPQGPWELQG : . .: :. : :. : .: :: ..: .. : : :: : . :.::: KIAA17 LTFTAKPHPSPTSLSLQSEDLDLPPGGPTQIISTRPSVEAFGGTRDGRPVLRLATWNLQG 220 230 240 250 260 270 160 170 180 190 200 210 FLJ002 ILLLSQNELYRQILLLMHLLPQDLLLLKPCQSSYCYCQEVLDRLIQCGLLVAEEVGRAVG . . :. . .. : :: ... :: ::.::: KIAA17 CSVEKANNPGVREVVCMTLLENSIKLLA--------VQELLDREALEKFCTELNQPTLPN 280 290 300 310 320 220 230 FLJ002 DKILAWSLASSSLPP KIAA17 IRKWKGPRGCWKAVVAEKPSNQLQKGAGYAGFLWDAAAGMELRDAGSQESSPSNGHGKLA 330 340 350 360 370 380 >>KIAA1624 ( 599 res) fg02331 (599 aa) initn: 86 init1: 61 opt: 87 Z-score: 100.3 bits: 27.2 E(): 2.2 Smith-Waterman score: 87; 26.712% identity (56.164% similar) in 146 aa overlap (14-155:463-596) 10 20 30 40 FLJ002 EDLLDHGGTRLLGLNLTSISTPRPTPASVGSSAVMSTAI-MAT :.: . : : ::::.. : ...:: .: KIAA16 GKGDSMGPLQQRANLRAGSRIESRHFARADLELLASSCP---PASVSQRAGITAAINLAK 440 450 460 470 480 50 60 70 80 90 100 FLJ002 LLLFKHQKGVFLSQLLGEFSWLTEEILLRGFDVGFSGQ-LRSLLQHSLSLLRAHVALLRI : ::.: ... . :. . .::. . : :. . : .::... .:. .. .. KIAA16 LKLFRHYYVLIVCYIY--FTRIIA-FLLK-LAVPFQWKWLYQLLDETATLVFFVLTGYKF 490 500 510 520 530 540 110 120 130 140 150 FLJ002 RQGDLLVVPQPGPGLTHLAQLSAELLPVFLSEAV--GACAVRGLLAGRVPPQGPWELQGI : .. .: :.. . . :. : . .: . :. . : : ::: :: KIAA16 RPAS----DNPYLQLSQ-EEEDLEMESVVTTSGVMESMKKVKKVTNGSVEPQGEWEGAV 550 560 570 580 590 160 170 180 190 200 210 FLJ002 LLLSQNELYRQILLLMHLLPQDLLLLKPCQSSYCYCQEVLDRLIQCGLLVAEEVGRAVGD >>KIAA0755 ( 1093 res) hk04532 (1093 aa) initn: 102 init1: 69 opt: 89 Z-score: 100.0 bits: 28.0 E(): 2.3 Smith-Waterman score: 89; 36.538% identity (53.846% similar) in 52 aa overlap (110-153:76-127) 80 90 100 110 120 130 FLJ002 QLRSLLQHSLSLLRAHVALLRIRQGDLLVVPQPGPGLT-----HLAQLSAELLPVFLSEA :::: ::. : .. : :. . . KIAA07 GTDFFCRIILWNDIFIMSQQGYVATPPYSQPQPGIGLSPPHYGHYGDPSHTASPTGMMKP 50 60 70 80 90 100 140 150 160 170 180 190 FLJ002 ---VGACAVRGLLAGRVPPQGPWELQGILLLSQNELYRQILLLMHLLPQDLLLLKPCQSS .:: :.::.: :: :: KIAA07 AGPLGATATRGMLPPGPPPPGPHQFGQNGAHATGHPPQRFPGPPPVNNVASSHAPYQPSA 110 120 130 140 150 160 >>FLJ00183 ( 227 res) sj01602 (227 aa) initn: 53 init1: 53 opt: 82 Z-score: 98.9 bits: 25.6 E(): 2.6 Smith-Waterman score: 82; 32.394% identity (57.746% similar) in 71 aa overlap (145-210:20-88) 120 130 140 150 160 170 FLJ002 GLTHLAQLSAELLPVFLSEAVGACAVRGLLAGRVPPQG--PWELQGILLLSQNELYRQIL :. .: .: : ::.:. ..:: .: FLJ001 KMAAAAAAAGAAGSAAPAAAAGAPGSGGAPSGSQGVLI--GDRLYSGVL 10 20 30 40 180 190 200 210 220 FLJ002 LLMH--LLPQDLLLLKPCQSSYCYCQEVLD-RLIQCGLLVAEEVGRAVGDKILAWSLASS . .. :::.: : . : .:: . : :.. : :. : FLJ001 ITLENCLLPDDKLRFTPSMSSGLDTDTETDLRVVGCELIQAAGILLRLPQVAMATGQVLF 50 60 70 80 90 100 230 FLJ002 SLPP FLJ001 QRFFYTKSFVKHSMEHVSMACVHLASKIEEAPRRIRDVINVFHRLRQLRDKKKPVPLLLD 110 120 130 140 150 160 >>KIAA0198 ( 562 res) ha02521 (562 aa) initn: 45 init1: 45 opt: 84 Z-score: 97.2 bits: 26.6 E(): 3.2 Smith-Waterman score: 84; 30.769% identity (51.282% similar) in 78 aa overlap (110-181:448-525) 80 90 100 110 120 130 FLJ002 QLRSLLQHSLSLLRAHVALLRIRQGDLLVVPQPGPGLTHLAQLSAELLPVFLSEAVGACA :::. . . : . :. ::::. : KIAA01 DKLPKVEVDSFLAELPGSLSLSSAEPQPASPQPAAAAALLDEALLAKSPANLSEALCAAN 420 430 440 450 460 470 140 150 160 170 180 190 FLJ002 VR-----GLLAGRVPPQGPWELQGILLLSQNELYRQILLL-MHLLPQDLLLLKPCQSSYC : :.: .:: .: : :... .. : :: .. ::: KIAA01 VDFSHLLGFLPLNLPPCNPPGATGGLVMGYSQAEAQPLLTTLQAQPQDSPGAGGPLNFGP 480 490 500 510 520 530 200 210 220 230 FLJ002 YCQEVLDRLIQCGLLVAEEVGRAVGDKILAWSLASSSLPP KIAA01 LHSLPPVFTSGLSSTTLPRFHQAFQ 540 550 560 >>KIAA1783 ( 1560 res) fg01285 (1560 aa) initn: 92 init1: 59 opt: 87 Z-score: 96.2 bits: 27.8 E(): 3.7 Smith-Waterman score: 87; 23.664% identity (49.618% similar) in 131 aa overlap (65-185:798-928) 40 50 60 70 80 90 FLJ002 MSTAIMATLLLFKHQKGVFLSQLLGEFSWLTEEILLRGFDVGFSGQL-RSLLQHSLSLLR : :. : :: :. . ... .:: :. KIAA17 AIPLAPGIQAPSLPPGPPPGPAPTLPSRDHTGEVQRSGSLDGFLDQIFQPVISSGLSDLE 770 780 790 800 810 820 100 110 120 130 140 FLJ002 AHVALL-RIRQGDLLVVPQPG-----PGLTHLAQLSAELLPVFLSEAVGACAVRGLLAGR :: :.. : . : : ::. .. . ..:. . . .: .. : KIAA17 QSWALSSRMKGGGAIGPTQQGYPMVYPGMIQMPAYQPGMVPAPMPMMPAMGTVPAMPAMV 830 840 850 860 870 880 150 160 170 180 190 200 FLJ002 VPPQGPW---ELQGILLLSQNELYRQILLLMHLLPQDLLLLKPCQSSYCYCQEVLDRLIQ :::: : . . . .:: . .: :.: . . . . : KIAA17 VPPQPPLPSLDAGQLAVQQQNFIQQQALILAQQMTAQAMSLSLEQQMQQRQQQARASEAA 890 900 910 920 930 940 210 220 230 FLJ002 CGLLVAEEVGRAVGDKILAWSLASSSLPP KIAA17 SQASPSAVTSKPRKPPTPPEKPQRDLGSEGGCLRETSEEAEDRPYQPKSFQQKRNYFQRM 950 960 970 980 990 1000 >>FLJ00209 ( 358 res) sj05025 (358 aa) initn: 96 init1: 49 opt: 79 Z-score: 93.5 bits: 25.2 E(): 5.2 Smith-Waterman score: 79; 37.500% identity (53.125% similar) in 64 aa overlap (104-157:268-331) 80 90 100 110 120 130 FLJ002 DVGFSGQLRSLLQHSLSLLRAHVALLRIRQGDLLVVPQ-PGPGLTHLAQLSAELLPVF-- : :. :. :::. .:: : : : FLJ002 PARLSCLSKNLNYDTFGLAVPSTLPAGPEIGPRLLGPEAPGPSGIRLAISMATWLRVEPR 240 250 260 270 280 290 140 150 160 170 180 FLJ002 LSEAVGACAVRGLLAGRVPPQ-------GPWELQGILLLSQNELYRQILLLMHLLPQDLL ::.. .: ::::. :: :::.:. FLJ002 TSEVLWRPLTRLSLAGRASPQEPGQPCCGPWRLHWSAGSLPWPRGWRGRERSSRLRRRRW 300 310 320 330 340 350 190 200 210 220 230 FLJ002 LLKPCQSSYCYCQEVLDRLIQCGLLVAEEVGRAVGDKILAWSLASSSLPP FLJ002 S >>FLJ00324 ( 376 res) sj01157 (376 aa) initn: 91 init1: 69 opt: 79 Z-score: 93.3 bits: 25.3 E(): 5.3 Smith-Waterman score: 79; 33.333% identity (60.317% similar) in 63 aa overlap (97-159:144-204) 70 80 90 100 110 120 FLJ002 EILLRGFDVGFSGQLRSLLQHSLSLLRAHVALLRIRQGDLLVVPQPGPGLTHLAQLSAEL :.:. .:. ::.. : :::: .: ..:.. FLJ003 ALRRMQQMAGHLGAFHPAPLPLGACGAYTTAILQ-HQAALLAAAQ-GPGLGPVAAVAAQM 120 130 140 150 160 170 130 140 150 160 170 180 FLJ002 LPVFLSEAVGACAVRGLLAGRVPPQGPWELQGILLLSQNELYRQILLLMHLLPQDLLLLK : :.: . . :. : .:: : :. FLJ003 QHVAAFSLVAAPLLPAAAANSPPGSGPGTLPGLPAPIGVNGFGPLTPQTNGQPGSDTLYN 180 190 200 210 220 230 190 200 210 220 230 FLJ002 PCQSSYCYCQEVLDRLIQCGLLVAEEVGRAVGDKILAWSLASSSLPP FLJ003 NGLSPYPAQSPGVADPLQQAYAGMHHYAAAYPSAYAPVSTAFPQQPSALPQQQREGPEGC 240 250 260 270 280 290 >>FLJ00277 ( 357 res) sh01540 (357 aa) initn: 70 init1: 46 opt: 77 Z-score: 91.3 bits: 24.8 E(): 6.9 Smith-Waterman score: 77; 31.111% identity (46.667% similar) in 90 aa overlap (77-153:159-241) 50 60 70 80 90 FLJ002 KHQKGVFLSQLLGEFSWLTEEILLRGFDVGFSGQLRSL--------LQHSLSLLRAH--- :.:: :: .:::. . : FLJ002 AICCHTSTSKRHWLRFFYLYHFAFYAYHYRFNGQYSSLALVTSWLFIQHSMIYFFHHYEL 130 140 150 160 170 180 100 110 120 130 140 150 FLJ002 -VALLRIR-QGDLLVVPQPGPGLTHLAQLSAELLPVFLSEAVGACAVRGLLAGRVPPQGP . : ..: : :: .: ::: . :: ... :: :. ::. : :: FLJ002 PAILQQVRIQEMLLQAPPLGPG-------TPTALPDDMNNNSGAPATAPDSAGQPPALGP 190 200 210 220 230 240 160 170 180 190 200 210 FLJ002 WELQGILLLSQNELYRQILLLMHLLPQDLLLLKPCQSSYCYCQEVLDRLIQCGLLVAEEV FLJ002 VSPGASGSPGPVAAAPSSLVAAAASVAAAAGGDLGWMAETAAIITDASFLSGLSASLLER 250 260 270 280 290 300 233 residues in 1 query sequences 2210761 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:44:33 2009 done: Fri Feb 27 10:44:33 2009 Total Scan time: 0.410 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]