# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj04377.fasta.huge -Q ../query/FLJ00387.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00387, 116 aa vs ./tmplib.10216 library 2210878 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.1550+/-0.00316; mu= 10.9936+/- 0.214 mean_var=58.0566+/-12.796, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.168325 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0061 ( 903 res) ha01242 ( 903) 74 25.9 4 KIAA0704 ( 919 res) hg02921s2 ( 919) 72 25.5 5.7 KIAA0124 ( 682 res) ha01534 ( 682) 70 24.8 6.4 KIAA1602 ( 1003 res) fj10252 (1003) 71 25.3 7.1 KIAA0878 ( 687 res) hk07361 ( 687) 69 24.6 7.6 KIAA0970 ( 1151 res) hh13674 (1151) 71 25.3 7.8 KIAA0307 ( 716 res) hg00066 ( 716) 68 24.4 9.3 KIAA1692 ( 855 res) fj05607 ( 855) 68 24.5 11 KIAA0382 ( 1443 res) ef00443 (1443) 69 24.9 13 KIAA0485 ( 83 res) hg00837 ( 83) 57 20.8 13 FLJ00263 ( 764 res) sj01530 ( 764) 65 23.7 16 KIAA0609 ( 769 res) hk00807 ( 769) 65 23.7 16 KIAA1368 ( 1049 res) fj03125 (1049) 66 24.1 17 KIAA2026 ( 858 res) fk11517 ( 858) 65 23.7 18 FLJ00026 ( 1180 res) as00026 (1180) 66 24.1 18 KIAA1464 ( 621 res) fh18679 ( 621) 63 23.1 20 KIAA0630 ( 490 res) hh01735 ( 490) 62 22.8 20 KIAA1538 ( 1029 res) fg06773 (1029) 65 23.8 20 FLJ00152 ( 1373 res) sh06018 (1373) 66 24.2 21 FLJ00320 ( 267 res) sh07586 ( 267) 59 21.8 21 KIAA0804 ( 1211 res) hk01186(revised) (1211) 65 23.9 22 KIAA0674 ( 1234 res) hk02519 (1234) 65 23.9 23 KIAA0730 ( 1004 res) hk03632 (1004) 64 23.6 23 FLJ00346 ( 1799 res) sg00012 (1799) 66 24.3 25 FLJ00276 ( 426 res) sh00612 ( 426) 60 22.2 25 KIAA0365 ( 1181 res) hh00120s1 (1181) 64 23.6 26 KIAA1614 ( 1208 res) fj12973 (1208) 64 23.6 26 KIAA1941 ( 1233 res) ah04470 (1233) 64 23.6 27 KIAA0995 ( 1014 res) hk07740 (1014) 63 23.3 27 FLJ00385 ( 509 res) sj03289 ( 509) 60 22.3 28 KIAA0698 ( 1104 res) hg00360s1 (1104) 63 23.4 29 KIAA0542 ( 1212 res) hg04325s1 (1212) 63 23.4 31 KIAA0218 ( 777 res) ha02987 ( 777) 61 22.7 32 FLJ00086 ( 399 res) as00086 ( 399) 58 21.7 33 KIAA0566 ( 1163 res) hh01910 (1163) 62 23.1 36 KIAA0890 ( 1210 res) hk08057 (1210) 62 23.2 37 FLJ00210 ( 161 res) sj05028 ( 161) 53 20.1 41 KIAA1206 ( 1912 res) fg04331 (1912) 63 23.6 43 KIAA0884 ( 943 res) hk07674 ( 943) 60 22.6 43 KIAA1747 ( 791 res) pj02023 ( 791) 59 22.2 45 KIAA1199 ( 1013 res) fg01973 (1013) 60 22.6 45 KIAA1296 ( 815 res) fg03576 ( 815) 59 22.3 46 FLJ00321 ( 245 res) sh07670 ( 245) 54 20.5 46 KIAA1123 ( 1717 res) fh01458 (1717) 62 23.3 47 KIAA0406 ( 1095 res) hg01335s1 (1095) 60 22.6 48 KIAA0049 ( 969 res) ha01035 ( 969) 59 22.3 52 FLJ00383 ( 380 res) sj02824 ( 380) 55 21.0 53 KIAA0414 ( 492 res) hh00161 ( 492) 56 21.3 53 KIAA1926 ( 412 res) hh10052 ( 412) 55 21.0 56 FLJ00291 ( 159 res) sh02993 ( 159) 51 19.6 56 >>KIAA0061 ( 903 res) ha01242 (903 aa) initn: 50 init1: 50 opt: 74 Z-score: 95.6 bits: 25.9 E(): 4 Smith-Waterman score: 74; 23.529% identity (57.353% similar) in 68 aa overlap (50-113:272-338) 20 30 40 50 60 70 FLJ003 AAWQSVSHSRLARKSIFIFVSTQHFSVSLLANKWRPIVGGASQPSCLT----SESSGLEY :. . :.: ... :: : ..:. KIAA00 LPTPSQEKSQTELPDEKIGKKRKRKDDGENAKPIKKIIGDGTRDPCLPYSWISPTTGI-I 250 260 270 280 290 300 80 90 100 110 FLJ003 VHPRGLDEAHLRLLGQMVSATGREAVARTSVNTVSTQSLLC . .. ..::.: . . ::. .::.::. .. KIAA00 ISDLTMEMNRFRLIGPLSHSILTEAIKAASVHTVGEDTEETPHRWWIETCKKPDSVSLHC 310 320 330 340 350 360 KIAA00 RQEAIFELLGGITSPAEIPAGTILGLTVGDPRINLPQKKSKALPNPEKCQDNEKVRQLLL 370 380 390 400 410 420 >>KIAA0704 ( 919 res) hg02921s2 (919 aa) initn: 34 init1: 34 opt: 72 Z-score: 92.9 bits: 25.5 E(): 5.7 Smith-Waterman score: 72; 25.287% identity (57.471% similar) in 87 aa overlap (1-80:656-736) 10 20 FLJ003 FTSSMQGHHR--AALH-EQRRRAAWQSVS- : : . .:: .: : :.: . ::.: KIAA07 ASSYYRAGSKPFNPVLGETYECIREDKGFQFFSEQVSHHPPISACHAESRNFVFWQDVRW 630 640 650 660 670 680 30 40 50 60 70 80 FLJ003 HSRLARKSIFIF-VSTQHFSVSLLAN--KWRPIVGGASQPSCLTSESSGLEYVHPRGLDE .... ::. : ..: : .. .... .: .. ::. . :: .... : KIAA07 KNKFWGKSMEIVPIGTTHVTLPVFGDHFEWNKVT------SCIHNILSGQRWIEHYGEIV 690 700 710 720 730 90 100 110 FLJ003 AHLRLLGQMVSATGREAVARTSVNTVSTQSLLC KIAA07 IKNLHDDSCYCKVNFIKAKYWSTNAHEIEGTVFDRSGKAVHRLFGKWHESIYCGGGSSSA 740 750 760 770 780 790 >>KIAA0124 ( 682 res) ha01534 (682 aa) initn: 57 init1: 57 opt: 70 Z-score: 91.9 bits: 24.8 E(): 6.4 Smith-Waterman score: 70; 30.488% identity (53.659% similar) in 82 aa overlap (6-80:492-568) 10 20 30 FLJ003 FTSSMQGHHRAALHEQRRRAAWQSVSHS-----RL ::: .. .:. :: . . :: :. KIAA01 GLRLRICHGKPVTQVTWHGRGDYLAVVLATQGHTQVLIHQLSRRRSQSPFRHSHGQVQRV 470 480 490 500 510 520 40 50 60 70 80 FLJ003 ARKSI--FIFVSTQHFSVSLLANKWRPIVGGASQPSCLTSESSGLEYVHPRGLDEAHLRL : . :..:..:. :: : . : . .:.: . :.: ::: : KIAA01 AFHPARPFLLVASQR-SVRLY-HLLRQELTKKLMPNC--KWVSSLA-VHPAGDNVICGSY 530 540 550 560 570 90 100 110 FLJ003 LGQMVSATGREAVARTSVNTVSTQSLLC KIAA01 DSKLVWFDLDLSTKPYRMLRHHKKALRAVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQ 580 590 600 610 620 630 >>KIAA1602 ( 1003 res) fj10252 (1003 aa) initn: 47 init1: 47 opt: 71 Z-score: 91.1 bits: 25.3 E(): 7.1 Smith-Waterman score: 71; 35.000% identity (58.333% similar) in 60 aa overlap (55-110:576-633) 30 40 50 60 70 80 FLJ003 VSHSRLARKSIFIFVSTQHFSVSLLANKWRPIVGGASQPSC----LTSESSGLEYVHPRG :.: : ..:: :. .:. : : .: KIAA16 APLVTKESPKPDKGKGPPWADCGSTTAQSTPLVPGPTDPSQGPEGLAPHSAIEEKVM-KG 550 560 570 580 590 600 90 100 110 FLJ003 LDEAHLRLLGQMVSATGREAVARTSVNTVSTQSLLC ..: ::: :: : : :. :.. . .: KIAA16 IEENVLRLQGQE-RAPGAEVKHRNTSSIASWFGLKKSKLPALNRRTEATKNKEGAGGGSP 610 620 630 640 650 660 >>KIAA0878 ( 687 res) hk07361 (687 aa) initn: 31 init1: 31 opt: 69 Z-score: 90.5 bits: 24.6 E(): 7.6 Smith-Waterman score: 69; 32.727% identity (52.727% similar) in 55 aa overlap (53-103:13-62) 30 40 50 60 70 FLJ003 QSVSHSRLARKSIFIFVSTQHFSVSLLANKWRP---IVGGASQPSCLTSESSGLEYVHPR : : ..:.: : :. : :. : KIAA08 VAAAYPPPASPPWSPARSLAGAAPAPLCV-----GPAAVEAR 10 20 30 80 90 100 110 FLJ003 GLDEA-HLRLLGQMVSATGREAVARTSVNTVSTQSLLC : : :. :.... ::::.: KIAA08 EGDAAGDERIAGELAARGPREAVSRCFSPSRRPALGFEIMSIHIVALGNEGDTFHQDNRP 40 50 60 70 80 90 >>KIAA0970 ( 1151 res) hh13674 (1151 aa) initn: 68 init1: 68 opt: 71 Z-score: 90.3 bits: 25.3 E(): 7.8 Smith-Waterman score: 71; 41.379% identity (62.069% similar) in 29 aa overlap (52-79:635-663) 30 40 50 60 70 80 FLJ003 WQSVSHSRLARKSIFIFVSTQHFSVSLLANKWRP-IVGGASQPSCLTSESSGLEYVHPRG .: : .: :.: :: . : : .: .:: KIAA09 SLLVQTPAVPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPRE 610 620 630 640 650 660 90 100 110 FLJ003 LDEAHLRLLGQMVSATGREAVARTSVNTVSTQSLLC KIAA09 VYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGPPDQCKPPQVTCRS 670 680 690 700 710 720 >>KIAA0307 ( 716 res) hg00066 (716 aa) initn: 54 init1: 54 opt: 68 Z-score: 89.0 bits: 24.4 E(): 9.3 Smith-Waterman score: 68; 25.974% identity (54.545% similar) in 77 aa overlap (23-98:135-208) 10 20 30 40 50 FLJ003 FTSSMQGHHRAALHEQRRRAAWQSVSHSRLARKSIFIFV-STQHFSVSLLAN : ..: : . :.:: ... : ... KIAA03 LRMAVSHMKSMRGTGNKSTDGAYKPSFLTEQELKHLILEAADGFLFVVAAETGRVIYVSD 110 120 130 140 150 160 60 70 80 90 100 110 FLJ003 KWRPIVGGASQPSCLTSESSGLEYVHPRGLDEAHLRLLGQMVSATGREAVARTSVNTVST . :.. .::. :. : ::: ... . .: . : ::: KIAA03 SVTPVL---NQPQSEWFGSTLYEQVHPDDVEKLREQLCTSENSMTGRILDLKTGTVKKEG 170 180 190 200 210 220 FLJ003 QSLLC KIAA03 QQSSMRMCMGSRRSFICRMRCGNAPLDHLPLNRITTMRKRFRNGLGPVKEGEAQYAVVHC 230 240 250 260 270 280 >>KIAA1692 ( 855 res) fj05607 (855 aa) initn: 42 init1: 42 opt: 68 Z-score: 88.0 bits: 24.5 E(): 11 Smith-Waterman score: 68; 23.958% identity (56.250% similar) in 96 aa overlap (1-88:612-701) 10 20 FLJ003 FTSSMQGHH-----RAALHEQRRRAAWQSV :: :..::. . . ... : .. KIAA16 AYAMEIGKKIPVPDQCTIEDTVRSCVAKLFFTCSLKGHYCLYSKSSFILISQEPQPWIQI 590 600 610 620 630 640 30 40 50 60 70 80 FLJ003 SHSRLARKSIFIF-VSTQHFSVSLLANKWRPIVGGASQPSCLTSESSGLEYVHP--RGLD : ..:.: .: : ::..: :. .:... . :.. .: . : . :: KIAA16 MF--LFQQSLFPEPLSIQSHSVQFLRALWEKTQAGGAH----SFETAMMESTFPQQKDLD 650 660 670 680 690 90 100 110 FLJ003 EAHLRLLGQMVSATGREAVARTSVNTVSTQSLLC ...:.: KIAA16 QVQLHLEEVRFFDVFGFSETAGAWQCFMCNNPEKATVVNQDGQPLIEGKLKEKQVRWKFI 700 710 720 730 740 750 >>KIAA0382 ( 1443 res) ef00443 (1443 aa) initn: 66 init1: 66 opt: 69 Z-score: 86.5 bits: 24.9 E(): 13 Smith-Waterman score: 69; 40.741% identity (59.259% similar) in 27 aa overlap (61-87:1391-1417) 40 50 60 70 80 90 FLJ003 ARKSIFIFVSTQHFSVSLLANKWRPIVGGASQPSCLTSESSGLEYVHPRGLDEAHLRLLG : :: :.:. .::.: : ::. KIAA03 HSDGAISPFTPEFLVQQRWGAMEYSCFEIQSPSSCADSQSQIMEYIHKIEADLEHLKKVE 1370 1380 1390 1400 1410 1420 100 110 FLJ003 QMVSATGREAVARTSVNTVSTQSLLC KIAA03 ESYTILCQRLAGSALTDKHSDKS 1430 1440 >>KIAA0485 ( 83 res) hg00837 (83 aa) initn: 31 init1: 31 opt: 57 Z-score: 86.3 bits: 20.8 E(): 13 Smith-Waterman score: 57; 32.609% identity (52.174% similar) in 46 aa overlap (34-71:5-48) 10 20 30 40 50 60 FLJ003 SMQGHHRAALHEQRRRAAWQSVSHSRLARKSIFIFVSTQHFSVSLLANKWRPIVGGASQP :.:.: . ::.: . .: . :. :: KIAA04 YFLYSFFFFFEMESHSVALAGVQWCDL--GSLQP 10 20 30 70 80 90 100 110 FLJ003 --------SCLTSESSGLEYVHPRGLDEAHLRLLGQMVSATGREAVARTSVNTVSTQSLL :::. :: KIAA04 PSPRFRRFSCLSLPSSWDYRCTPPAWVIFVFLVEMGFQHVGQADLGTPDLK 40 50 60 70 80 116 residues in 1 query sequences 2210878 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:37 2009 done: Fri Feb 27 11:02:37 2009 Total Scan time: 0.310 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]