# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj04429.fasta.huge -Q ../query/FLJ00388.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00388, 103 aa vs ./tmplib.10216 library 2210891 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.3005+/-0.00441; mu= 8.7939+/- 0.299 mean_var=105.2271+/-22.174, 0's: 0 Z-trim: 1 B-trim: 21 in 1/39 Lambda= 0.125029 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00280 ( 440 res) sh01728 ( 440) 110 28.7 0.25 KIAA1093 ( 1727 res) fh18956 (1727) 103 28.1 1.5 KIAA1190 ( 174 res) hg03443a ( 174) 88 24.3 2.1 KIAA0473 ( 937 res) hh00220 ( 937) 90 25.5 5 KIAA1652 ( 179 res) hg02500 ( 179) 81 23.1 5.2 KIAA2038 ( 917 res) pj01991 ( 917) 88 25.1 6.3 KIAA0458 ( 1552 res) ef01252 (1552) 90 25.7 7 KIAA1555 ( 2414 res) fh17482s2 (2414) 92 26.3 7.3 KIAA1297 ( 2242 res) fg03883 (2242) 91 26.1 7.9 KIAA1910 ( 760 res) fh21867 ( 760) 82 24.0 12 KIAA0306 ( 1451 res) hg00063 (1451) 85 24.8 13 KIAA1292 ( 595 res) hk05468(revised) ( 595) 78 23.1 17 FLJ00322 ( 659 res) sh08187 ( 659) 78 23.2 18 KIAA0482 ( 1332 res) hj01880 (1332) 81 24.0 19 KIAA1583 ( 435 res) fj06651 ( 435) 75 22.4 20 KIAA0905 ( 1229 res) hk10341 (1229) 80 23.8 21 KIAA1779 ( 1233 res) hg04229 (1233) 80 23.8 21 KIAA0439 ( 995 res) hj00462 ( 995) 78 23.4 23 KIAA1535 ( 711 res) fk12792 ( 711) 76 22.8 24 FLJ00058 ( 164 res) as00058 ( 164) 68 20.7 25 FLJ00085 ( 292 res) as00085 ( 292) 71 21.5 25 KIAA0940 ( 699 res) hh04894 ( 699) 75 22.6 27 KIAA1388 ( 599 res) fj06552 ( 599) 74 22.4 27 KIAA1967 ( 818 res) fj04244 ( 818) 75 22.7 30 KIAA0858 ( 1557 res) hh02535 (1557) 78 23.6 31 KIAA1206 ( 1912 res) fg04331 (1912) 79 23.9 32 FLJ00317 ( 111 res) sh07047 ( 111) 63 19.6 35 KIAA0638 ( 1384 res) hj03347s1 (1384) 76 23.2 37 KIAA1657 ( 127 res) hg00527 ( 127) 63 19.7 39 KIAA0842 ( 1020 res) hk05077 (1020) 74 22.7 39 KIAA0429 ( 666 res) hk07754 ( 666) 71 21.9 43 KIAA0672 ( 824 res) hk02382 ( 824) 72 22.2 43 KIAA1246 ( 832 res) hh00149a ( 832) 72 22.2 44 KIAA1218 ( 864 res) fh03016 ( 864) 72 22.2 45 KIAA1110 ( 740 res) hh04831b(revised) ( 740) 71 22.0 46 KIAA1045 ( 427 res) hh00656 ( 427) 68 21.1 46 KIAA0656 ( 912 res) hk01789 ( 912) 72 22.2 46 FLJ00235 ( 141 res) sj07209 ( 141) 62 19.5 47 KIAA1100 ( 444 res) hk07907 ( 444) 68 21.2 47 KIAA0269 ( 567 res) ha06751 ( 567) 69 21.5 49 KIAA1205 ( 1217 res) fg03511a (1217) 73 22.6 49 FLJ00001 ( 155 res) as00001 ( 155) 62 19.6 50 FLJ00049 ( 133 res) as00049 ( 133) 61 19.3 51 FLJ00163 ( 521 res) sh06933 ( 521) 68 21.2 53 FLJ00321 ( 245 res) sh07670 ( 245) 64 20.2 53 KIAA0310 ( 2388 res) ee03470 (2388) 76 23.4 53 KIAA0385 ( 1380 res) hh00802 (1380) 73 22.6 54 KIAA0625 ( 2663 res) hg04796s1 (2663) 76 23.5 57 KIAA0574 ( 405 res) hj00204 ( 405) 66 20.8 57 KIAA1522 ( 1044 res) fh14706(revised) (1044) 71 22.1 57 >>FLJ00280 ( 440 res) sh01728 (440 aa) initn: 110 init1: 63 opt: 110 Z-score: 117.2 bits: 28.7 E(): 0.25 Smith-Waterman score: 110; 32.468% identity (50.649% similar) in 77 aa overlap (20-88:78-154) 10 20 30 40 FLJ003 SSSMNIVIFPEIHLSSQKKSPRWLSKPVRFRNKSSLPTPPTTTTTPHSA ::: : .: . . .:::: : : . FLJ002 PGHSPLLGHTPTSRDTPPSRNTLPPPWMLPSPRTLPSPRTLPSPRTLPTPGTHFYLPGHS 50 60 70 80 90 100 50 60 70 80 90 100 FLJ003 PF--NDPAGLDCCLWVGEL--LKGGGGVNWN----PGLQPSPELLPALPHSLTPGEERVH :. . . : : :.: . .:. ::. :::. ::: FLJ002 PLLGHTSPSWDTLPPPGTHFPLQGHTSPSWDILPTPGMLPSPRTLPAPRTHSYFLGRSPF 110 120 130 140 150 160 FLJ003 EN FLJ002 PGHSPLLGHYPLPGHTPRYRDTPPSRDTPPSRDIPLSLDAPLSLDTPYSRDTLPATGTLP 170 180 190 200 210 220 >>KIAA1093 ( 1727 res) fh18956 (1727 aa) initn: 59 init1: 59 opt: 103 Z-score: 103.3 bits: 28.1 E(): 1.5 Smith-Waterman score: 103; 26.437% identity (55.172% similar) in 87 aa overlap (10-95:1467-1551) 10 20 30 FLJ003 SSSMNIVIFPEIHLSSQKKSPRWLSKPVRFRNKSSLPTP : : .. .. : .. . :: . :: : KIAA10 WPYSASDNSFTNVHSTSAKFPDYKSTWSPDPIGHNPTHLSNKMW-KNHISSRNTTPLPRP 1440 1450 1460 1470 1480 1490 40 50 60 70 80 90 FLJ003 PTTTTTPH-SAPFNDPAGLDCCLWVGELLKGGGGVNWNPGLQPSPELLPALPHSLTPGEE : :.:. :.:... : . : . . ... .:. : . : .: :.::: KIAA10 PPGLTNPKPSSPWSSTAPRSVRGWGTQDSRLASASTWSDGGSVRPSYWLVL-HNLTPQID 1500 1510 1520 1530 1540 1550 100 FLJ003 RVHEN KIAA10 GSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFATD 1560 1570 1580 1590 1600 1610 >>KIAA1190 ( 174 res) hg03443a (174 aa) initn: 98 init1: 60 opt: 88 Z-score: 100.6 bits: 24.3 E(): 2.1 Smith-Waterman score: 88; 42.857% identity (64.286% similar) in 42 aa overlap (60-95:109-149) 30 40 50 60 70 80 FLJ003 FRNKSSLPTPPTTTTTPHSAPFNDPAGLDCCLWVGELLKGGGGVNWNPGLQPS-PE---- :. :.. : .: :: ::: :. :. KIAA11 RTHTGEKPYPCDVCGQRFRFSNMLKAHKEKCFRVSHTL-AGDGVPAAPGLPPTQPQAHAL 80 90 100 110 120 130 90 100 FLJ003 -LLPALPHSLTPGEERVHEN :::.::..: : KIAA11 PLLPGLPQTLPPPPHLPPPPPLFPTTASPGGRMNANN 140 150 160 170 >>KIAA0473 ( 937 res) hh00220 (937 aa) initn: 61 init1: 61 opt: 90 Z-score: 93.8 bits: 25.5 E(): 5 Smith-Waterman score: 90; 32.787% identity (59.016% similar) in 61 aa overlap (34-92:712-768) 10 20 30 40 50 60 FLJ003 MNIVIFPEIHLSSQKKSPRWLSKPVRFRNKSSLPTPPTTTTTPHSA--PFNDPAGLDCCL ::. . ::: : .. :...: . KIAA04 SPTGSSHGTPTHQSKPQTLDPFADLGTLGSSSFASKPTTPTGLGGGFPPLSSPQKASP-Q 690 700 710 720 730 740 70 80 90 100 FLJ003 WVGELLKGGGGVNWNPGLQPSPELLPALPHSLTPGEERVHEN .: . ::. ::. ::.:. :..::: KIAA04 PMGGGWQQGGAYNWQ---QPQPKPQPSMPHSSPQNRPNYNVSFSAMPGGQNERGKGSSNL 750 760 770 780 790 KIAA04 EGKQKAADFEDLLSGQGFNAHKDKKGPRTIAEMRKEEMAKEMDPEKLKILEWIEGKERNI 800 810 820 830 840 850 >>KIAA1652 ( 179 res) hg02500 (179 aa) initn: 75 init1: 75 opt: 81 Z-score: 93.6 bits: 23.1 E(): 5.2 Smith-Waterman score: 81; 31.818% identity (50.000% similar) in 66 aa overlap (36-101:54-119) 10 20 30 40 50 60 FLJ003 IVIFPEIHLSSQKKSPRWLSKPVRFRNKSSLPTPPTTTTTPHSAPFNDPAGLDCCLWVGE : ::: : . . :.: :.:: KIAA16 SSYCHSQINSTLKGRWRVSPSHRALALLLCLLTPPFTHSIRELLPLNRGAALDQAHRDVA 30 40 50 60 70 80 70 80 90 100 FLJ003 LLKGGGGVNWNPGLQPSPELLPALPHSLTPGEERVHEN .:: : .:: ::. . :: . . : ..: KIAA16 DQWAGGCVPGKPGRQPGRQQARPLPTQQSCGGLHAHPPLLGVCFIFLYFQNEHPPDSLPG 90 100 110 120 130 140 KIAA16 MIDAGGGSFSQSLASDPASRGRRGFCAPAGGRSGMC 150 160 170 >>KIAA2038 ( 917 res) pj01991 (917 aa) initn: 48 init1: 48 opt: 88 Z-score: 92.0 bits: 25.1 E(): 6.3 Smith-Waterman score: 88; 28.571% identity (50.549% similar) in 91 aa overlap (10-96:685-772) 10 20 30 FLJ003 SSSMNIVIFPEIHLSSQKKSPRWLSKPVRFRNKSSLPTP : ::: .:: : :: . . : : KIAA20 PPLFKPSHPQKRFAPFGALNPFSGPAYPSGPSAALSS---GPRTTSGPVATSGPAYSPGP 660 670 680 690 700 710 40 50 60 70 80 90 FLJ003 PTTTTTPHSAPFND--PAGLDCCLWVGELLKGGGGVNWNPGLQPSPELLPAL-PHSL-TP . . .:: .. :.. . : .:. . . : .: :::: . :... :: KIAA20 ASPGQAYSAAPPSSCAPSSSSSSEWQEPVLEPFDPFELGQGSSPEPELLRSQEPRAVGTP 720 730 740 750 760 770 100 FLJ003 GEERVHEN : KIAA20 GPGPRLSPLGPSKAFEPEGLVLHQVPTPLSPAALQGPEAGGALFLTQGRLEGPPASPRDG 780 790 800 810 820 830 >>KIAA0458 ( 1552 res) ef01252 (1552 aa) initn: 101 init1: 54 opt: 90 Z-score: 91.2 bits: 25.7 E(): 7 Smith-Waterman score: 90; 27.778% identity (44.444% similar) in 90 aa overlap (10-95:923-1008) 10 20 30 FLJ003 SSSMNIVIFPEIHLSSQKKSPRWLSKPVRFRNKSSLPTP :.. . .: : :: : : ...:: : KIAA04 LQSQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSMNANLPPP 900 910 920 930 940 950 40 50 60 70 80 90 FLJ003 PT----TTTTPHSAPFNDPAGLDCCLWVGELLKGGGGVNWNPGLQPSPELLPALPHSLTP :. .. . : : : :. : .. ::: : .: : : : : KIAA04 PALKPLSSLSTHHPPSAHPPPLQLMPQSQPL---PSSPAQPPGLTQSQNL-PPPPASHPP 960 970 980 990 1000 100 FLJ003 GEERVHEN KIAA04 TGLHQVAPQPPFAQHPFVPGGPPPITPPTCPSTSTPPAGPGTSAQPPCSGAAASGGSIAG 1010 1020 1030 1040 1050 1060 >>KIAA1555 ( 2414 res) fh17482s2 (2414 aa) initn: 98 init1: 56 opt: 92 Z-score: 90.9 bits: 26.3 E(): 7.3 Smith-Waterman score: 92; 28.571% identity (48.352% similar) in 91 aa overlap (17-100:86-172) 10 20 30 40 FLJ003 SSSMNIVIFPEIHLSSQKKSPRWLSKPVRFR-NKSSLPTPPTTTTT :.: :. :.. . :.:: : : . KIAA15 ESPAQELLAPQPFPGPSSVLREGSQEKTGQQQKPPK--RPPIEASVHISQLPQHPLTPA- 60 70 80 90 100 110 50 60 70 80 90 FLJ003 PHSAPFNDPAGLDCCLW--VGELLKGGGGVNWNPGLQPSPELLPA----LPHSLTPGEER .: . :. : : . : .: :::.:. .:::. .: :: . KIAA15 -FMSPGKPEHLLEGSTWQLVDPMRPGPSGSFVAPGLHPQSQLLPSHASIIPPEDLPGVPK 120 130 140 150 160 170 100 FLJ003 VHEN : KIAA15 VFVPRPSQVSLKPTEEAHKKERKPQKPGKYICQYCSRPCAKPSVLQKHIRSHTGERPYPC 180 190 200 210 220 230 >>KIAA1297 ( 2242 res) fg03883 (2242 aa) initn: 72 init1: 69 opt: 91 Z-score: 90.3 bits: 26.1 E(): 7.9 Smith-Waterman score: 91; 30.233% identity (50.000% similar) in 86 aa overlap (20-99:1818-1892) 10 20 30 40 FLJ003 SSSMNIVIFPEIHLSSQKKSPRWLSKPVRFRNKSSLPTPPTTTTTPHSA :: :. :. . ::::..:..: : KIAA12 RGTQDSSAVPSAAHQEAPVTSRPARARPPDSPTSLAPPL----APAAPTPPSVTVSPSSP 1790 1800 1810 1820 1830 1840 50 60 70 80 90 100 FLJ003 PFNDPAGLDCCLWVGELLKGGGGVNWNP-----GLQPSPELLPALPHS-LTPGEERVHEN : .:. ::. : .: ::: . :.:: . .::.: . KIAA12 PTPPSQALSS-------LKAVGPPPQTPPRRHRGLQAARPAEPTLPSTHVTPSEPKPFVL 1850 1860 1870 1880 1890 KIAA12 DTGTPIPASTPQGVKPVSSSTPVYVVTSFVSAPPAPEPPAPEPPPEPTKVTVQSLSPAKE 1900 1910 1920 1930 1940 1950 >>KIAA1910 ( 760 res) fh21867 (760 aa) initn: 71 init1: 71 opt: 82 Z-score: 87.1 bits: 24.0 E(): 12 Smith-Waterman score: 82; 29.508% identity (50.820% similar) in 61 aa overlap (27-82:326-386) 10 20 30 40 50 FLJ003 SSSMNIVIFPEIHLSSQKKSPRWLSKPVRFRNKSSLPTPPTTTTTPHSAPFNDP-- :.. : ::::.::. : .:. : KIAA19 KNALIGRVVCEAPTRLQGKDLNETTEQDLCPLKNRVDSSLPAPPAQEETFAPGPLPTPFK 300 310 320 330 340 350 60 70 80 90 100 FLJ003 -AGLDCCLWVGELLKGGGGV--NWNPGLQPSPELLPALPHSLTPGEERVHEN : . : .:: . ::. ..:. KIAA19 TNGQEDHATPGSAPNGGTKIPGNWQIKIRPTAAIATGSSRNKPLANSLPCPGGCSCDHIP 360 370 380 390 400 410 KIAA19 GSGLKMNCNNRNVSSLADLKPKLSNVQELFLRDNKIHSIRKSHFVDYKNLILLDLGNNNI 420 430 440 450 460 470 103 residues in 1 query sequences 2210891 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:37 2009 done: Fri Feb 27 11:02:38 2009 Total Scan time: 0.300 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]