# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj04935.fasta.huge -Q ../query/FLJ00207.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00207, 288 aa vs ./tmplib.10216 library 2210706 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.3268+/-0.00498; mu= 18.5755+/- 0.335 mean_var=153.9657+/-33.993, 0's: 0 Z-trim: 1 B-trim: 5 in 1/39 Lambda= 0.103362 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1121 ( 1390 res) hh10147 (1390) 128 31.1 0.43 KIAA1511 ( 1253 res) fg04486(revised) (1253) 116 29.2 1.4 KIAA0855 ( 632 res) hk06219 ( 632) 111 27.9 1.8 FLJ00198 ( 677 res) sj03504 ( 677) 108 27.5 2.5 KIAA0705 ( 1483 res) hg03359s1 (1483) 107 28.0 3.9 KIAA1197 ( 1487 res) fg01844 (1487) 107 28.0 3.9 KIAA0815 ( 1640 res) sh06087 (1640) 106 27.9 4.5 KIAA1330 ( 945 res) fh15188 ( 945) 103 27.1 4.8 KIAA1661 ( 90 res) hg03945 ( 90) 92 23.5 5.2 FLJ00056 ( 1310 res) as00056 (1310) 103 27.3 5.5 FLJ00128 ( 1546 res) sh01521 (1546) 103 27.4 6 KIAA0995 ( 1014 res) hk07740 (1014) 101 26.8 6.1 KIAA0510 ( 95 res) hh00345 ( 95) 90 23.3 6.6 KIAA1787 ( 1564 res) fh19054 (1564) 101 27.2 7.4 KIAA1602 ( 1003 res) fj10252 (1003) 99 26.5 7.4 KIAA0999 ( 1371 res) fj10213 (1371) 100 26.9 7.7 KIAA0279 ( 2854 res) ff05612 (2854) 101 27.6 9.7 KIAA0160 ( 803 res) ha03912s1 ( 803) 95 25.7 10 KIAA1091 ( 1359 res) hk04373 (1359) 97 26.5 10 KIAA1114 ( 1458 res) fj15925 (1458) 97 26.5 11 KIAA0144 ( 983 res) ha03843 ( 983) 94 25.7 12 KIAA1855 ( 1270 res) fg04654 (1270) 95 26.1 13 KIAA1938 ( 1376 res) hg00912s1 (1376) 95 26.2 13 KIAA0765 ( 952 res) hk04803s1 ( 952) 93 25.6 14 FLJ00176 ( 403 res) sj00934 ( 403) 89 24.3 14 KIAA1750 ( 431 res) pj02374 ( 431) 88 24.2 16 KIAA0222 ( 1204 res) ha02586 (1204) 92 25.6 17 KIAA2031 ( 515 res) ef03841 ( 515) 88 24.3 17 KIAA1442 ( 627 res) hh10127b ( 627) 88 24.5 19 KIAA1567 ( 924 res) fh22119 ( 924) 89 25.0 20 FLJ00059 ( 477 res) as00059 ( 477) 86 24.0 20 KIAA1279 ( 632 res) hh00842s1 ( 632) 87 24.3 21 KIAA0360 ( 1019 res) hh00062s1 (1019) 89 25.0 21 KIAA2036 ( 1322 res) pf06513 (1322) 90 25.4 21 FLJ00009 ( 540 res) as00009 ( 540) 86 24.1 22 KIAA0689 ( 547 res) hk03417 ( 547) 86 24.1 22 KIAA1579 ( 704 res) fj04678 ( 704) 87 24.4 22 KIAA0221 ( 1151 res) ha02799 (1151) 89 25.1 22 KIAA0278 ( 460 res) ha06634 ( 460) 85 23.8 22 FLJ00100 ( 672 res) as00100 ( 672) 86 24.2 24 KIAA2010 ( 920 res) fj14762 ( 920) 87 24.6 25 KIAA1816 ( 1162 res) fh16716 (1162) 88 25.0 25 FLJ00010 ( 772 res) as00010 ( 772) 86 24.4 25 FLJ00291 ( 159 res) sh02993 ( 159) 77 21.8 32 KIAA0641 ( 1326 res) hj03494s1 (1326) 86 24.8 32 KIAA0495 ( 209 res) hg00106 ( 209) 78 22.1 32 KIAA0227 ( 336 res) ha02748 ( 336) 80 22.8 32 KIAA1477 ( 870 res) fj04927 ( 870) 84 24.2 33 KIAA1053 ( 508 res) hh05049 ( 508) 81 23.3 35 FLJ00201 ( 705 res) sj04110 ( 705) 82 23.7 37 >>KIAA1121 ( 1390 res) hh10147 (1390 aa) initn: 159 init1: 87 opt: 128 Z-score: 113.0 bits: 31.1 E(): 0.43 Smith-Waterman score: 128; 30.400% identity (60.000% similar) in 125 aa overlap (115-237:10-129) 90 100 110 120 130 140 FLJ002 LRWLPADLAFAVRALCCKRALRARALAAAAADPEGPEGGCSLAWRLAELAQQRAAHTFLI :::. : . .. : . :. . .. KIAA11 PGEKRPPGRADPRLPPAPPTFCTPSRGLQRPRSPGATML 10 20 30 150 160 170 180 190 200 FLJ002 HGSRRFSYSE--AERESNRAARAFLRALGWDWGPDGGDSGEGSAGEGERAAPGAGDAAAG : :. .:.::.. . . . : .: . ..::::: . .. ::: :.:: KIAA11 DPSSSEEESDEIVEEESGKEVLGSAPS-GARLSP--SRTSEGSAGSAGLGGGGAG-AGAG 40 50 60 70 80 90 210 220 230 240 250 260 FLJ002 SGAEFAGGDGAARGGGAAAPLSPGATVALLLPAGPEFLWLWFGLAKAGLRTAFVPTALRR :: .::.::. ::::.. :.:.. .. :..: KIAA11 VGAGGGGGSGASSGGGAGG-LQPSSRAGGGRPSSPSPSVVSEKEKEELERLQKEEEERKK 100 110 120 130 140 150 270 280 FLJ002 GPLLHCLRSCGARALVLAPGKAGAPN KIAA11 RLQLYVFVMRCIAYPFNAKQPTDMARRQQKISKQQLQTVKDRFQAFLNGETQIMADEAFM 160 170 180 190 200 210 >>KIAA1511 ( 1253 res) fg04486(revised) (1253 aa) initn: 209 init1: 88 opt: 116 Z-score: 103.6 bits: 29.2 E(): 1.4 Smith-Waterman score: 116; 31.250% identity (48.214% similar) in 112 aa overlap (150-253:168-275) 120 130 140 150 160 170 FLJ002 PEGGCSLAWRLAELAQQRAAHTFLIHGSRRFSYSEAERESNRAARAFLRALGWDWGPDGG .:. . ::: . .: : : :: KIAA15 AKTVAEKWAYERVEERFERIPEPVQRRIVYWSFPRNEREICMYS-SFQYRGGPGAGAAGG 140 150 160 170 180 190 180 190 200 210 220 230 FLJ002 DSGEGSAGEGERAAPGA--------GDAAAGSGAEFAGGDGAARGGGAAAPLSPGATVAL .: . : :: . ::: : .:::.. ...: ::: :: . :. : KIAA15 AAGASPAEEGPQPPPGAAAPAGSAPGGVAAGASPGLGAGAGAAGCGGEGLPFRRGIR--- 200 210 220 230 240 250 240 250 260 270 280 FLJ002 LLPAGPEFLWLWFGLAKAGLRTAFVPTALRRGPLLHCLRSCGARALVLAPGKAGAPN :: .: : :. .: : KIAA15 LLDSGSVENVLQVGFHLSGTVTELATASEPAVTYKVAISFDRCKITSVTCGCGNKDIFYC 260 270 280 290 300 310 >>KIAA0855 ( 632 res) hk06219 (632 aa) initn: 175 init1: 76 opt: 111 Z-score: 102.0 bits: 27.9 E(): 1.8 Smith-Waterman score: 111; 33.077% identity (55.385% similar) in 130 aa overlap (114-235:435-560) 90 100 110 120 130 140 FLJ002 QLRWLPADLAFAVRALCCKRALRARALAAAAADPEGPEGGCSLAWRLAELAQQRAAHTFL :: : . :: : . : .: ...: KIAA08 ALQLEQQVKELQEKLGQVMETLTSAEKEPEAAVPASGTGGESSG--LMDLLEEKADLREH 410 420 430 440 450 460 150 160 170 180 190 FLJ002 IHGSRRFSYSEAERES-NRAARAFLRALG---WDWGPDGG--DSGEGSAGEGERAAPGAG .. . .... . .:: .. .. .: : : .: :: ..: :..:: .:: .:: KIAA08 VE-KLELGFIQYRRERCHQNVHRLLTEPGDSAKDASPGGGHHQAGPGQGGEEGEAAGAAG 470 480 490 500 510 520 200 210 220 230 240 250 FLJ002 D--AAAGSGAEFAGGDGAARGGGAAAPLSPGATVALLLPAGPEFLWLWFGLAKAGLRTAF : :: :: : : :: . :: : :::: . : : KIAA08 DGVAACGSYNEGHGKFLAAAQNPAAEP-SPGAPAPQELGAADKHGDLCEASLTNSVEPAQ 530 540 550 560 570 580 260 270 280 FLJ002 VPTALRRGPLLHCLRSCGARALVLAPGKAGAPN KIAA08 GEAREGSSQDNPTAQPIVQLLGEMQDHQEHPGLGSNCCVPCFCWAWLPRRRR 590 600 610 620 630 >>FLJ00198 ( 677 res) sj03504 (677 aa) initn: 131 init1: 104 opt: 108 Z-score: 99.3 bits: 27.5 E(): 2.5 Smith-Waterman score: 123; 46.154% identity (67.308% similar) in 52 aa overlap (179-230:576-622) 150 160 170 180 190 200 FLJ002 RFSYSEAERESNRAARAFLRALGWDWGPDGGDSGEGSAGEGERAAPGAGDAAAGSGAEFA :::: :.: : : ::: ..:: :. FLJ001 EPAGPCPGAAAAEPAGAGAQQPPAGREVCAGDSGPGAAPE----AGGAGGGGAG-GTAVP 550 560 570 580 590 600 210 220 230 240 250 260 FLJ002 GGDGAARGGGAAAPLSPGATVALLLPAGPEFLWLWFGLAKAGLRTAFVPTALRRGPLLHC ::: : .: :..: .::...: FLJ001 GGDPRAAAGPASGPQGPGTAAAAAGGRARGTAGAAPRPQGQHAGTGAGPPGAAGPARAAA 610 620 630 640 650 660 >>KIAA0705 ( 1483 res) hg03359s1 (1483 aa) initn: 182 init1: 81 opt: 107 Z-score: 95.8 bits: 28.0 E(): 3.9 Smith-Waterman score: 111; 33.333% identity (58.559% similar) in 111 aa overlap (136-237:1349-1459) 110 120 130 140 150 160 FLJ002 RARALAAAAADPEGPEGGCSLAWRLAELAQQRAAHTFLIHGSRRFSYSEAERESNRA-AR ::::. : .. . :: : ...: : KIAA07 EHDVRKPKELSACGQKKQRLGEQRERSASPQRAARPRLEEAPGGQGRPEAGRPASEARAP 1320 1330 1340 1350 1360 1370 170 180 190 200 210 FLJ002 AFLRALGWDWGPDGG-DSGEGSAG------EGERAAPG-AGDAAAGSGAEFAGGDGAARG .. : . : . :: .. ...:: :: :::. :: ...:::: : : ..::. KIAA07 GLAAADAADAARAGGKEAPRAAAGSELCRREGPGAAPAFAGPGGGGSGALEAEGRAGARA 1380 1390 1400 1410 1420 1430 220 230 240 250 260 270 FLJ002 GGAAAPLSPGATVALLLPAGPEFLWLWFGLAKAGLRTAFVPTALRRGPLLHCLRSCGARA : .: ::.. : ..: KIAA07 GPRPGPRPPGGAPARKAAVAPGPWKVPGSDKLPSVLKPGASAASR 1440 1450 1460 1470 1480 >>KIAA1197 ( 1487 res) fg01844 (1487 aa) initn: 300 init1: 91 opt: 107 Z-score: 95.8 bits: 28.0 E(): 3.9 Smith-Waterman score: 110; 24.219% identity (60.156% similar) in 128 aa overlap (108-226:780-906) 80 90 100 110 120 130 FLJ002 KLHLWPQLRWLPADLAFAVRALCCKRALRARALAAAAADPEGPEGGCSLAWRLAEL---A ..:. : . ::. . : . .: : : KIAA11 KAVGPKQVVTQGVAKAIVSGGGGTIVAQPVQTLTKAQVTAAGPQKSGSQGSVMATLQLPA 750 760 770 780 790 800 140 150 160 170 180 FLJ002 QQRAAHTFLIHGSRRFSYSEAERESNRAAR------AFLRALGWDWGPDGGDSGEGSAGE . : . : :.. . .... :... :.::: . . . ..:... :..: KIAA11 TNLANLANLPPGTKLYLTTNSKNPSGKGKLLLIPQGAILRATN-NANLQSGSAASGGSGA 810 820 830 840 850 860 190 200 210 220 230 240 FLJ002 GERAAPGAGDAAAGSGAEFAGGDGAARGGGAAAPLSPGATVALLLPAGPEFLWLWFGLAK : .. :.: .....:. .:: :.. :::. . .:: KIAA11 GGGGGGGGGGGSGSGGGGSTGGGGGTAGGGTQSTAGPGGISQHLTYTSYILKQTPQGTFL 870 880 890 900 910 920 250 260 270 280 FLJ002 AGLRTAFVPTALRRGPLLHCLRSCGARALVLAPGKAGAPN KIAA11 VGQPSPQTSGKQLTTGSVVQGTLGVSTSSAQGQQTLKVISGQKTTLFTQAAHGGQASLMK 930 940 950 960 970 980 >>KIAA0815 ( 1640 res) sh06087 (1640 aa) initn: 68 init1: 68 opt: 106 Z-score: 94.6 bits: 27.9 E(): 4.5 Smith-Waterman score: 106; 27.966% identity (50.847% similar) in 118 aa overlap (174-288:8-121) 150 160 170 180 190 200 FLJ002 IHGSRRFSYSEAERESNRAARAFLRALGWDWGPDGGDSGE--GSAGEGERAAPGAGDAAA : .: : :..:. :.::.: ..: KIAA08 PGRVPAGWTRRSGLRGATLGAGGKPGRSAPAATLGSA 10 20 30 210 220 230 240 250 260 FLJ002 GSG-AEFAGGDGAARGGGAAAPLSPGATVALLLPAGPEFLWLWFGLAKAGLRTAFVPTAL . : :.. :: :::.. : :: :. .: .. :.:. :.. . .: KIAA08 DRARAPVAASYGARGGGGSGEP--PGPPVSRRAEEAPARTMSFLEEARAAGRAVVLALVL 40 50 60 70 80 90 270 280 FLJ002 RRGPLLHCLRSCGARALVLAPGKAGAPN : . : : :. : . : :. KIAA08 LLLPAVPVGASVPPRPLL--PLQPGMPHVCAEQELTLVGRRQPCVQALSHTVPVWKAGCG 100 110 120 130 140 150 >>KIAA1330 ( 945 res) fh15188 (945 aa) initn: 82 init1: 56 opt: 103 Z-score: 94.1 bits: 27.1 E(): 4.8 Smith-Waterman score: 115; 32.500% identity (51.250% similar) in 160 aa overlap (137-273:265-416) 110 120 130 140 150 160 FLJ002 ARALAAAAADPEGPEGGCSLAWRLAELAQQRAAHTFLIHG--SRRFSYSEAERESNRAAR ..:.:.:. :::.. . .:: .:.: KIAA13 ATLTPTVEVAGLSPRTSRRILERVENNHLVQSAQTLLLSPCTSRRLT-GLLDREV-QAGR 240 250 260 270 280 290 170 180 190 200 FLJ002 AFLRALGWDWGP---------------DGGDSGEG-SAGEGERAAPGAGDAAAGSGAEFA : : .::: : : ..:: : :::: . : : .:.. . .: KIAA13 QALAAARGSWGPGPSSLTVPAIVVDEEDPGLASEGASEGEGEVSLEGPGLLGASQESSMA 300 310 320 330 340 350 210 220 230 240 250 260 FLJ002 GGDGAARGGGAAAP-LSPGATVALLLPAGPEFLWLWFGLAKAGLRTAFVPTAL----RRG : : : :: ::: .:.: :. : . : : .:: .: .: : :: KIAA13 GRLGEA--GGQAAPGQGPSAESIAQEPSQEE---KFPGEALTGLPAA-TPEELALGARRK 360 370 380 390 400 270 280 FLJ002 PLLHCLRSCGARALVLAPGKAGAPN .: .:. : KIAA13 RFLPKVRAAGDGEATTPEERESPTVSPRGPRKSLVPGSPGTPGRERRSPTQGRKASMLEV 410 420 430 440 450 460 >>KIAA1661 ( 90 res) hg03945 (90 aa) initn: 145 init1: 66 opt: 92 Z-score: 93.5 bits: 23.5 E(): 5.2 Smith-Waterman score: 99; 36.066% identity (55.738% similar) in 61 aa overlap (171-226:30-88) 150 160 170 180 190 FLJ002 TFLIHGSRRFSYSEAERESNRAARAFLRALGWDWGPDGGDSGEGSAG----EGERAAPGA : : : : :: .:..: .:. . :. KIAA16 GDDGGGCDDGDDDGDDDGGGGDGGGDGDDGGDGGDDDGDHDDGDGGYGGDDGDDDGDGG 10 20 30 40 50 200 210 220 230 240 250 FLJ002 GDAAAGSGAEFAGGDGAAR-GGGAAAPLSPGATVALLLPAGPEFLWLWFGLAKAGLRTAF ::. .. . ::: : ::: : :. : KIAA16 GDGDDDDSDD--GGDDANDDGGGCHALLTSGKD 60 70 80 90 260 270 280 FLJ002 VPTALRRGPLLHCLRSCGARALVLAPGKAGAPN >>FLJ00056 ( 1310 res) as00056 (1310 aa) initn: 114 init1: 76 opt: 103 Z-score: 93.0 bits: 27.3 E(): 5.5 Smith-Waterman score: 119; 30.216% identity (52.518% similar) in 139 aa overlap (118-237:653-789) 90 100 110 120 130 140 FLJ002 LPADLAFAVRALCCKRALRARALAAAAADPEGPEGGCSLAWRLAELAQQRAAHTFLIHGS : :.: : :: .. :: :: .. .: FLJ000 QERLAQAREALALEENATSQKVLDIFEQRLEQVESGLHRALRLQRFFQQ--AHEWVDEGF 630 640 650 660 670 680 150 160 170 180 190 FLJ002 RRFSYSEAERESNRAARAF-------------LRALGWDWGPDGG--DSGEGSAGEGE-- :.. . ::. :: :. .:::. : : .. . :. .: : FLJ000 ARLAGAGPGREAVLAALALRRAPEPSAGTFQEMRALALDLGSPAALREWGRCQARCQELE 690 700 710 720 730 740 200 210 220 230 240 FLJ002 -RAAPGAGDAAAGSGAEFAGGDGAARGGGAAAPLSPGATVA-LLLPAGPEFLWLWFGLAK : :. :. : . .:::. ::. .: ::. ... ::::..: FLJ000 RRIQQHLGEEASPRGYRRRRADGASSGGAQWGPRSPSPSLSSLLLPSSPGPRPAPSHCSL 750 760 770 780 790 800 250 260 270 280 FLJ002 AGLRTAFVPTALRRGPLLHCLRSCGARALVLAPGKAGAPN FLJ000 APCGEDYEEEGPELAPEAEGRPPRAVLIRGLEVTSTEVVDRTCSPREHVLLGRARGPDGP 810 820 830 840 850 860 288 residues in 1 query sequences 2210706 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:44:39 2009 done: Fri Feb 27 10:44:39 2009 Total Scan time: 0.440 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]