# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj04948.fasta.huge -Q ../query/FLJ00391.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00391, 124 aa vs ./tmplib.10216 library 2210870 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.0396+/-0.00323; mu= 12.4567+/- 0.219 mean_var=59.8970+/-13.089, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.165719 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1065 ( 665 res) hj05094 ( 665) 81 27.3 1.2 KIAA0020 ( 647 res) ha00602 ( 647) 77 26.3 2.4 KIAA0639 ( 1835 res) fg02716y2 (1835) 79 27.3 3.4 KIAA0751 ( 1200 res) hk04424 (1200) 76 26.4 4.2 KIAA1553 ( 670 res) fh17011 ( 670) 73 25.4 4.7 FLJ00335 ( 157 res) sj05150 ( 157) 67 23.2 4.8 KIAA1562 ( 1136 res) fh20205 (1136) 74 25.9 5.7 KIAA0898 ( 979 res) hk09541 ( 979) 73 25.5 6.1 KIAA0517 ( 792 res) hg00752 ( 792) 72 25.2 6.2 KIAA0499 ( 100 res) hg00204 ( 100) 63 22.1 6.9 KIAA0670 ( 1286 res) hk02359s1 (1286) 71 25.2 10 KIAA0355 ( 1082 res) hg01881 (1082) 70 24.9 11 KIAA1187 ( 813 res) fk03027 ( 813) 68 24.3 12 KIAA1173 ( 333 res) hk01721(revised) ( 333) 64 22.9 13 KIAA1586 ( 739 res) fj08085 ( 739) 67 24.0 14 FLJ00272 ( 165 res) sh00274 ( 165) 60 21.6 16 KIAA0719 ( 624 res) hk01141 ( 624) 65 23.4 17 KIAA0340 ( 1053 res) hg01396 (1053) 67 24.1 17 KIAA0914 ( 678 res) sj01106 ( 678) 65 23.5 18 KIAA0221 ( 1151 res) ha02799 (1151) 67 24.2 18 KIAA1230 ( 932 res) fh06860s1 ( 932) 66 23.8 19 FLJ00184 ( 580 res) sj01836 ( 580) 64 23.1 19 KIAA1019 ( 2309 res) fg00188s1 (2309) 69 25.0 21 KIAA1900 ( 582 res) fk07650 ( 582) 63 22.9 23 KIAA0597 ( 971 res) hj02980 ( 971) 65 23.6 23 KIAA1921 ( 545 res) fg00938 ( 545) 62 22.6 25 KIAA0522 ( 1555 res) hg01393 (1555) 66 24.1 26 FLJ00108 ( 216 res) as00108 ( 216) 58 21.2 26 KIAA0853 ( 967 res) hk06136 ( 967) 64 23.4 27 FLJ00195 ( 639 res) sj02957 ( 639) 62 22.7 28 KIAA0812 ( 1364 res) hg01044 (1364) 65 23.8 28 KIAA0274 ( 932 res) ha06690 ( 932) 63 23.1 31 KIAA1199 ( 1013 res) fg01973 (1013) 63 23.2 32 KIAA0250 ( 1122 res) ha02790 (1122) 63 23.2 35 KIAA0553 ( 1450 res) pf08859 (1450) 64 23.6 35 KIAA0179 ( 762 res) ha02738 ( 762) 61 22.6 37 KIAA0523 ( 468 res) hg01394 ( 468) 59 21.8 38 KIAA0817 ( 2785 res) hg01392s2 (2785) 66 24.4 39 KIAA1741 ( 1777 res) fh23254 (1777) 64 23.7 40 KIAA1831 ( 663 res) hk00543 ( 663) 60 22.3 40 KIAA1186 ( 405 res) pj00504 ( 405) 58 21.5 40 KIAA0454 ( 2296 res) bf02274 (2296) 65 24.0 40 FLJ00327 ( 266 res) sj02293 ( 266) 56 20.9 42 KIAA1670 ( 598 res) hh04251 ( 598) 59 22.0 44 KIAA0396 ( 627 res) hg00180s1 ( 627) 59 22.0 46 KIAA1837 ( 639 res) fh22040s1 ( 639) 59 22.0 46 KIAA1548 ( 545 res) fh15779 ( 545) 58 21.7 49 KIAA1414 ( 1586 res) fh14368(revised) (1586) 62 23.1 52 KIAA1966 ( 480 res) fh23421 ( 480) 57 21.4 53 KIAA0680 ( 635 res) hk02746 ( 635) 58 21.8 54 >>KIAA1065 ( 665 res) hj05094 (665 aa) initn: 60 init1: 38 opt: 81 Z-score: 104.6 bits: 27.3 E(): 1.2 Smith-Waterman score: 81; 33.871% identity (50.000% similar) in 62 aa overlap (63-121:198-259) 40 50 60 70 80 90 FLJ003 LVSLVRWNLRNGYLNVAKWYDSKADLIFLLEEDLLTRESSRENGRRRGRNCELKDSFEKH . .: : .: .: :. : . : : KIAA10 RAQALKTKERMAQVATGMGSNQITFGRGSSQPNLSTSHSEQEYGKAGGSPASYHGSPEAS 170 180 190 200 210 220 100 110 120 FLJ003 -CPKSRTKKWACTSKWLYPVDL--PFLQHLLLCLL ::. :: :. : :.. ::: :: : KIAA10 LCPQHRTGAPLGQSEELQPLSQRHPFLPHLGLASRPNGDWSQPCLTCDRAARATSPRVSS 230 240 250 260 270 280 KIAA10 ELEQARPQTSGEEELQLQLALAMSREVAEQEERLRRGDDLRLQMALEESRRDTVKIPKKK 290 300 310 320 330 340 >>KIAA0020 ( 647 res) ha00602 (647 aa) initn: 41 init1: 41 opt: 77 Z-score: 99.6 bits: 26.3 E(): 2.4 Smith-Waterman score: 77; 25.000% identity (58.696% similar) in 92 aa overlap (19-106:514-597) 10 20 30 40 FLJ003 IGANDQEIAGCSVGGQGKMGLHGGEVGHLFQMLVSLVRWNL----RNG .: :.: .. ..::. .: ..: KIAA00 SISPALLSYLQEHAQEVVLDKSACVLVSDILGSATGDVQPTMNAIASLAATGLHPGGKDG 490 500 510 520 530 540 50 60 70 80 90 100 FLJ003 YLNVAKWYDSKADLIFLLEEDLLTRESSRENGRRRGRNCELKDSFEKHCPKSRTKKWACT :..:. .. : .:.:.: .. .::::. .: : .. .: . :.:: . KIAA00 ELHIAEHPAGHLVLKWLIEQD----KKMKENGRE---GCFAK-TLVEHVGMKNLKSWASV 550 560 570 580 590 110 120 FLJ003 SKWLYPVDLPFLQHLLLCLL .. KIAA00 NRGAIILSSLLQSCDLEVANKVKAALKSLIPTLEKTKSTSKGIEILLEKLST 600 610 620 630 640 >>KIAA0639 ( 1835 res) fg02716y2 (1835 aa) initn: 42 init1: 42 opt: 79 Z-score: 96.8 bits: 27.3 E(): 3.4 Smith-Waterman score: 79; 36.170% identity (55.319% similar) in 47 aa overlap (62-102:635-681) 40 50 60 70 80 FLJ003 MLVSLVRWNLRNGYLNVAKWYDSKADLIFLLEEDLLTRESSRENGRRR----GRNCELKD ::.. : : :. ::: .::. : KIAA06 VTMKALGSNDPMQSILNSLEQQHEEEKRSALERQRLMYEHELEQLRRRLSPEKQNCRSMD 610 620 630 640 650 660 90 100 110 120 FLJ003 SFEKHCP--KSRTKKWACTSKWLYPVDLPFLQHLLLCLL : : : ..: ..:: KIAA06 RFSFHSPSAQQRLRQWAEEREATLNNSLMRLREQIVKANLLVREANYIAEELDKRTEYKV 670 680 690 700 710 720 >>KIAA0751 ( 1200 res) hk04424 (1200 aa) initn: 39 init1: 39 opt: 76 Z-score: 95.1 bits: 26.4 E(): 4.2 Smith-Waterman score: 76; 30.986% identity (56.338% similar) in 71 aa overlap (43-107:595-661) 20 30 40 50 60 FLJ003 VGGQGKMGLHGGEVGHLFQMLVSLVRWNLRNGYLNVAKWYDSKA-DLI--FLLEEDLLTR .: :.. :.:. . .:: .: .:: KIAA07 SFESQKMDRPSISVTSPMSPGMLRDVPQFLSGQLSIKLWFDKVGHQLIVTILGAKDL--- 570 580 590 600 610 620 70 80 90 100 110 120 FLJ003 ESSRENGRRRGRNCE---LKDSFEKHCPKSRTKKWACTSKWLYPVDLPFLQHLLLCLL :::.:: :. . : : .:. ...: : . :: KIAA07 -PSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERML 630 640 650 660 670 680 KIAA07 EITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQTHDVSSLPLPHPSPYMPRRQ 690 700 710 720 730 740 >>KIAA1553 ( 670 res) fh17011 (670 aa) initn: 52 init1: 52 opt: 73 Z-score: 94.3 bits: 25.4 E(): 4.7 Smith-Waterman score: 73; 38.235% identity (61.765% similar) in 34 aa overlap (84-117:354-382) 60 70 80 90 100 110 FLJ003 SKADLIFLLEEDLLTRESSRENGRRRGRNCELKDSFEKHCPKSRTKKWACTSKWLYPVDL ...:::: . : :.:: :: :.:. KIAA15 GLGLDAGSEGDPPRDDCYDSSSLPDDISVVKVEDSFEGERPGRRSKKI-----WLVPIDF 330 340 350 360 370 120 FLJ003 PFLQHLLLCLL :. KIAA15 DKLEIPQPDFEVPGADCLLSKEQLRSIYESSLSIGNFASRLLVHLFPELFTHENLRKQYN 380 390 400 410 420 430 >>FLJ00335 ( 157 res) sj05150 (157 aa) initn: 61 init1: 39 opt: 67 Z-score: 94.1 bits: 23.2 E(): 4.8 Smith-Waterman score: 67; 39.623% identity (56.604% similar) in 53 aa overlap (26-78:15-58) 10 20 30 40 50 60 FLJ003 IGANDQEIAGCSVGGQGKMGLHGGEVGHLFQMLVSLVRWNLRNGYLNVAKWYDSKADLIF :: :: . : .:. : .: . ::::.. FLJ003 GLTSCPFHSSRRINVGSRFQAEIPL----MRDRALAAADPH--KADLVW 10 20 30 40 70 80 90 100 110 120 FLJ003 LLEEDLLTRESSRENGRRRGRNCELKDSFEKHCPKSRTKKWACTSKWLYPVDLPFLQHLL ::: :::::. :. FLJ003 QPWEDL---ESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILETLNKLL 50 60 70 80 90 100 >>KIAA1562 ( 1136 res) fh20205 (1136 aa) initn: 65 init1: 65 opt: 74 Z-score: 92.8 bits: 25.9 E(): 5.7 Smith-Waterman score: 74; 25.397% identity (57.143% similar) in 63 aa overlap (59-118:713-775) 30 40 50 60 70 80 FLJ003 LFQMLVSLVRWNLRNGYLNVAKWYDSKADLIFLLEEDLLTRESSRENGRRRGRNCELKDS ..:. :.. . .::. :. ::.. .: KIAA15 SVTSTAMTSVSQASLDVSMIIIISLGAICAVLLVIMVLFATRCNREKKDTRSYNCRVAES 690 700 710 720 730 740 90 100 110 120 FLJ003 FEKHCPKSRTKKWACTSKWLYPV---DLPFLQHLLLCLL .: :: ... . : :. ::. .: KIAA15 TYQHHPKRPSRQIHKGDITLVPTINGTLPIRSHHRSSPSSSPTLERGQMGSRQSHNSHQS 750 760 770 780 790 800 KIAA15 LNSLVTISSNHVPENFSLELTHATPAVEQVSQLLSMLHQGQYQPRPSFRGNKYSRSYRYA 810 820 830 840 850 860 >>KIAA0898 ( 979 res) hk09541 (979 aa) initn: 72 init1: 49 opt: 73 Z-score: 92.3 bits: 25.5 E(): 6.1 Smith-Waterman score: 73; 27.500% identity (55.000% similar) in 80 aa overlap (11-90:132-202) 10 20 30 40 FLJ003 IGANDQEIAGCSVGGQGKMGLHGGEVGHLFQMLVSLVRWN :.. : :.::: : :. :. . . . KIAA08 HEENEKDKCENHHEKLSVFCWTCKKCICHQCALWG----GMHGG---HTFKPLAEIYEQH 110 120 130 140 150 50 60 70 80 90 100 FLJ003 LRNGYLNVAKWYDSKADLIFLLEEDLLTRESSRENGRRRGRNCELKDSFEKHCPKSRTKK . . .::: .:: :..: . :. :. .: : :.... : KIAA08 VTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVR--EIRNAVEMMIARLDTQL 160 170 180 190 200 210 110 120 FLJ003 WACTSKWLYPVDLPFLQHLLLCLL KIAA08 KNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMA 220 230 240 250 260 270 >>KIAA0517 ( 792 res) hg00752 (792 aa) initn: 45 init1: 45 opt: 72 Z-score: 92.1 bits: 25.2 E(): 6.2 Smith-Waterman score: 72; 37.500% identity (70.000% similar) in 40 aa overlap (42-79:633-669) 20 30 40 50 60 FLJ003 SVGGQGKMGLHGGEVGHLFQMLVSLVRWNLRNGYLNVAKWYDSKADLIFLLEED--LLTR :::.. :. :.:: .:... . ..:: KIAA05 KWVSIFSSDGKFKTKIGSGKLMGPKGVSVDRNGHIIVV---DNKACCVFIFQPNGKIVTR 610 620 630 640 650 70 80 90 100 110 120 FLJ003 ESSRENGRRRGRNCELKDSFEKHCPKSRTKKWACTSKWLYPVDLPFLQHLLLCLL .:: :: :. KIAA05 FGSRGNGDRQFAGPHFAAVNSNNEIIITDFHNHSVKVFNQEGEFMLKFGSNGEGNGQFNA 660 670 680 690 700 710 >>KIAA0499 ( 100 res) hg00204 (100 aa) initn: 85 init1: 58 opt: 63 Z-score: 91.3 bits: 22.1 E(): 6.9 Smith-Waterman score: 63; 44.444% identity (72.222% similar) in 18 aa overlap (103-120:9-26) 80 90 100 110 120 FLJ003 RENGRRRGRNCELKDSFEKHCPKSRTKKWACTSKWLYPVDLPFLQHLLLCLL : . ::.. :::.:.: KIAA04 ERDNRGINCPISQRYPANEPFLMHMLRVASSYFGEIFN 10 20 30 KIAA04 KNCNQRLKLDLGLLNICTTSIQQSIYQSSSGARYSAGCWDIGKNDKYLSLPSYCLLNKVG 40 50 60 70 80 90 124 residues in 1 query sequences 2210870 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:40 2009 done: Fri Feb 27 11:02:40 2009 Total Scan time: 0.300 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]