# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj05028.fasta.nr -Q ../query/FLJ00210.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00210, 161 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7825929 sequences Expectation_n fit: rho(ln(x))= 5.8516+/-0.000191; mu= 4.9295+/- 0.011 mean_var=92.7602+/-17.476, 0's: 34 Z-trim: 35 B-trim: 0 in 0/67 Lambda= 0.133166 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|18676622|dbj|BAB84963.1| FLJ00210 protein [Homo ( 161) 1064 213.2 1.3e-53 gi|37779148|gb|AAO86733.1| LP9167 protein [Homo sa ( 137) 905 182.7 1.8e-44 gi|119600364|gb|EAW79958.1| hypothetical protein F ( 163) 872 176.4 1.7e-42 gi|148685511|gb|EDL17458.1| coiled-coil domain con ( 340) 876 177.4 1.7e-42 gi|119600363|gb|EAW79957.1| hypothetical protein F ( 188) 872 176.4 1.9e-42 gi|119600360|gb|EAW79954.1| hypothetical protein F ( 193) 872 176.4 1.9e-42 gi|109128124|ref|XP_001107089.1| PREDICTED: simila ( 205) 872 176.4 2e-42 gi|109128122|ref|XP_001107210.1| PREDICTED: simila ( 244) 872 176.5 2.3e-42 gi|74730149|sp|Q8NBZ0.1|IN80E_HUMAN RecName: Full= ( 244) 872 176.5 2.3e-42 gi|114661932|ref|XP_001146930.1| PREDICTED: hypoth ( 195) 867 175.5 3.7e-42 gi|114661934|ref|XP_001147002.1| PREDICTED: hypoth ( 205) 867 175.5 3.9e-42 gi|114661928|ref|XP_001147129.1| PREDICTED: hypoth ( 244) 867 175.5 4.4e-42 gi|149067805|gb|EDM17357.1| similar to hypothetica ( 140) 857 173.4 1.1e-41 gi|73958471|ref|XP_858644.1| PREDICTED: similar to ( 194) 857 173.5 1.4e-41 gi|33417050|gb|AAH55928.1| Ino80e protein [Mus mus ( 138) 855 173.0 1.4e-41 gi|73958469|ref|XP_849376.1| PREDICTED: similar to ( 205) 857 173.6 1.5e-41 gi|152001055|gb|AAI48161.1| INO80E protein [Bos ta ( 205) 856 173.4 1.7e-41 gi|73958465|ref|XP_547064.2| PREDICTED: similar to ( 244) 857 173.6 1.7e-41 gi|81884598|sp|Q6AYH2.1|IN80E_RAT RecName: Full=IN ( 244) 857 173.6 1.7e-41 gi|148685514|gb|EDL17461.1| coiled-coil domain con ( 205) 855 173.2 1.9e-41 gi|97046498|sp|Q29RS4.1|IN80E_BOVIN RecName: Full= ( 244) 856 173.4 1.9e-41 gi|149725770|ref|XP_001501840.1| PREDICTED: simila ( 244) 856 173.4 1.9e-41 gi|126335530|ref|XP_001364052.1| PREDICTED: hypoth ( 245) 814 165.4 5.2e-39 gi|73958467|ref|XP_858555.1| PREDICTED: similar to ( 230) 676 138.8 4.7e-31 gi|149417830|ref|XP_001521309.1| PREDICTED: hypoth ( 217) 620 128.0 7.8e-28 gi|149067815|gb|EDM17367.1| similar to hypothetica ( 205) 524 109.6 2.7e-22 gi|20071573|gb|AAH26475.1| NO80 complex subunit E ( 205) 522 109.2 3.5e-22 gi|40807074|gb|AAH65338.1| Zgc:77312 [Danio rerio] ( 231) 500 105.0 7.1e-21 gi|47221545|emb|CAF97810.1| unnamed protein produc ( 82) 468 98.5 2.3e-19 gi|148685516|gb|EDL17463.1| coiled-coil domain con ( 76) 446 94.3 4e-18 gi|210091561|gb|EEA39810.1| hypothetical protein B ( 102) 408 87.1 7.9e-16 gi|215491071|gb|EEC00712.1| conserved hypothetical ( 213) 410 87.7 1.1e-15 gi|115751509|ref|XP_793894.2| PREDICTED: hypotheti ( 280) 375 81.1 1.4e-13 gi|190622573|gb|EDV38097.1| GF13783 [Drosophila an ( 299) 365 79.2 5.6e-13 gi|45445585|gb|AAM68756.2| CG18004, isoform B [Dro ( 291) 356 77.4 1.8e-12 gi|7303684|gb|AAF58734.1| CG18004, isoform A [Dros ( 297) 356 77.4 1.8e-12 gi|194125281|gb|EDW47324.1| GM21245 [Drosophila se ( 297) 356 77.4 1.8e-12 gi|193902381|gb|EDW01248.1| GH20557 [Drosophila gr ( 313) 351 76.5 3.7e-12 gi|194192977|gb|EDX06553.1| GD10763 [Drosophila si ( 252) 347 75.6 5.4e-12 gi|48139894|ref|XP_393482.1| PREDICTED: similar to ( 236) 345 75.2 6.7e-12 gi|198136689|gb|EDY69250.1| GA24928 [Drosophila ps ( 295) 346 75.5 7e-12 gi|194176452|gb|EDW90063.1| GE12846 [Drosophila ya ( 297) 344 75.1 9.1e-12 gi|108882443|gb|EAT46668.1| conserved hypothetical ( 300) 344 75.1 9.2e-12 gi|194112964|gb|EDW35007.1| GL20093 [Drosophila pe ( 295) 343 74.9 1e-11 gi|190659340|gb|EDV56553.1| GG20156 [Drosophila er ( 297) 343 74.9 1e-11 gi|194144714|gb|EDW61110.1| GJ21854 [Drosophila vi ( 298) 342 74.7 1.2e-11 gi|193910994|gb|EDW09861.1| GI18826 [Drosophila mo ( 305) 341 74.6 1.4e-11 gi|167874555|gb|EDS37938.1| conserved hypothetical ( 305) 339 74.2 1.8e-11 gi|194157655|gb|EDW72556.1| GK20638 [Drosophila wi ( 326) 333 73.0 4.2e-11 gi|212508818|gb|EEB12399.1| coiled-coil domain-con ( 296) 312 69.0 6.5e-10 >>gi|18676622|dbj|BAB84963.1| FLJ00210 protein [Homo sap (161 aa) initn: 1064 init1: 1064 opt: 1064 Z-score: 1118.8 bits: 213.2 E(): 1.3e-53 Smith-Waterman score: 1064; 100.000% identity (100.000% similar) in 161 aa overlap (1-161:1-161) 10 20 30 40 50 60 FLJ002 AGAARQPLLGVAGGQTLGATPGPVMNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 AGAARQPLLGVAGGQTLGATPGPVMNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK 70 80 90 100 110 120 130 140 150 160 FLJ002 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQA ::::::::::::::::::::::::::::::::::::::::: gi|186 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQA 130 140 150 160 >>gi|37779148|gb|AAO86733.1| LP9167 protein [Homo sapien (137 aa) initn: 905 init1: 905 opt: 905 Z-score: 954.6 bits: 182.7 E(): 1.8e-44 Smith-Waterman score: 905; 100.000% identity (100.000% similar) in 137 aa overlap (25-161:1-137) 10 20 30 40 50 60 FLJ002 AGAARQPLLGVAGGQTLGATPGPVMNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL :::::::::::::::::::::::::::::::::::: gi|377 MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL 10 20 30 70 80 90 100 110 120 FLJ002 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|377 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK 40 50 60 70 80 90 130 140 150 160 FLJ002 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQA ::::::::::::::::::::::::::::::::::::::::: gi|377 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQA 100 110 120 130 >>gi|119600364|gb|EAW79958.1| hypothetical protein FLJ90 (163 aa) initn: 872 init1: 872 opt: 872 Z-score: 919.3 bits: 176.4 E(): 1.7e-42 Smith-Waterman score: 872; 100.000% identity (100.000% similar) in 132 aa overlap (25-156:1-132) 10 20 30 40 50 60 FLJ002 AGAARQPLLGVAGGQTLGATPGPVMNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL :::::::::::::::::::::::::::::::::::: gi|119 MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL 10 20 30 70 80 90 100 110 120 FLJ002 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK 40 50 60 70 80 90 130 140 150 160 FLJ002 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQA :::::::::::::::::::::::::::::::::::: gi|119 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSMAVGPPDCPVGGPLTFPGRGSGAG 100 110 120 130 140 150 gi|119 VGTTLTP 160 >>gi|148685511|gb|EDL17458.1| coiled-coil domain contain (340 aa) initn: 860 init1: 860 opt: 876 Z-score: 919.0 bits: 177.4 E(): 1.7e-42 Smith-Waterman score: 876; 91.781% identity (96.575% similar) in 146 aa overlap (13-156:83-228) 10 20 30 40 FLJ002 AGAARQPLLGVAGGQTL--GATPGPVMNGPADGEVDYKKKYR :. :: :..: ::::::::::::::::: gi|148 RARRTLGVVVRFIRRCKVSGSGGVRGRADLGSGTLLRGVSPWRVMNGPADGEVDYKKKYR 60 70 80 90 100 110 50 60 70 80 90 100 FLJ002 NLKRKLKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 NLKRKLKFLIYEHECFQEELRKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASS 120 130 140 150 160 170 110 120 130 140 150 160 FLJ002 DNSETEGTPKLSDTPAPKRKRSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQ ::::::::::::::::::::::::.::.:::::::::::::::::.::.::::::: gi|148 DNSETEGTPKLSDTPAPKRKRSPPMGGVPSPSSLSLPPSTGFPLQTSGAPSPYLSSLASP 180 190 200 210 220 230 FLJ002 A gi|148 PYPPFPSDYLALQLPEPSPLRPKLEKRPRLPRKLKMSVGPPDCPVGGPLAFPARGSGASV 240 250 260 270 280 290 >>gi|119600363|gb|EAW79957.1| hypothetical protein FLJ90 (188 aa) initn: 872 init1: 872 opt: 872 Z-score: 918.5 bits: 176.4 E(): 1.9e-42 Smith-Waterman score: 872; 100.000% identity (100.000% similar) in 132 aa overlap (25-156:1-132) 10 20 30 40 50 60 FLJ002 AGAARQPLLGVAGGQTLGATPGPVMNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL :::::::::::::::::::::::::::::::::::: gi|119 MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL 10 20 30 70 80 90 100 110 120 FLJ002 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK 40 50 60 70 80 90 130 140 150 160 FLJ002 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQA :::::::::::::::::::::::::::::::::::: gi|119 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSLASSRYPPFPSDYLALQLPEPSPL 100 110 120 130 140 150 gi|119 RPKREKRPRLPRKLKTLVVREQTERWSELGRE 160 170 180 >>gi|119600360|gb|EAW79954.1| hypothetical protein FLJ90 (193 aa) initn: 872 init1: 872 opt: 872 Z-score: 918.3 bits: 176.4 E(): 1.9e-42 Smith-Waterman score: 872; 100.000% identity (100.000% similar) in 132 aa overlap (25-156:1-132) 10 20 30 40 50 60 FLJ002 AGAARQPLLGVAGGQTLGATPGPVMNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL :::::::::::::::::::::::::::::::::::: gi|119 MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL 10 20 30 70 80 90 100 110 120 FLJ002 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK 40 50 60 70 80 90 130 140 150 160 FLJ002 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQA :::::::::::::::::::::::::::::::::::: gi|119 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSLASSRYPPFPSDYLALQLPEPSPL 100 110 120 130 140 150 gi|119 RPKREKRPRLPRKLKSARSGCRAEELDLGEAAGRESS 160 170 180 190 >>gi|109128124|ref|XP_001107089.1| PREDICTED: similar to (205 aa) initn: 872 init1: 872 opt: 872 Z-score: 917.9 bits: 176.4 E(): 2e-42 Smith-Waterman score: 872; 100.000% identity (100.000% similar) in 132 aa overlap (25-156:1-132) 10 20 30 40 50 60 FLJ002 AGAARQPLLGVAGGQTLGATPGPVMNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL :::::::::::::::::::::::::::::::::::: gi|109 MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL 10 20 30 70 80 90 100 110 120 FLJ002 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK 40 50 60 70 80 90 130 140 150 160 FLJ002 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQA :::::::::::::::::::::::::::::::::::: gi|109 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSMAVGPPDCPVGGPLTFPGRGSGAG 100 110 120 130 140 150 gi|109 VGTALTPLPPPKMPPPTILSTVPRQMFSDAGSGDDALDGDDDLVIDIPE 160 170 180 190 200 >>gi|109128122|ref|XP_001107210.1| PREDICTED: similar to (244 aa) initn: 872 init1: 872 opt: 872 Z-score: 916.9 bits: 176.5 E(): 2.3e-42 Smith-Waterman score: 872; 100.000% identity (100.000% similar) in 132 aa overlap (25-156:1-132) 10 20 30 40 50 60 FLJ002 AGAARQPLLGVAGGQTLGATPGPVMNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL :::::::::::::::::::::::::::::::::::: gi|109 MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL 10 20 30 70 80 90 100 110 120 FLJ002 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK 40 50 60 70 80 90 130 140 150 160 FLJ002 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQA :::::::::::::::::::::::::::::::::::: gi|109 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSLASPRYPPFPSDYLALQLPEPSPL 100 110 120 130 140 150 gi|109 RPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGTALTPLPPPKMPPPTILST 160 170 180 190 200 210 >>gi|74730149|sp|Q8NBZ0.1|IN80E_HUMAN RecName: Full=INO8 (244 aa) initn: 872 init1: 872 opt: 872 Z-score: 916.9 bits: 176.5 E(): 2.3e-42 Smith-Waterman score: 872; 100.000% identity (100.000% similar) in 132 aa overlap (25-156:1-132) 10 20 30 40 50 60 FLJ002 AGAARQPLLGVAGGQTLGATPGPVMNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL :::::::::::::::::::::::::::::::::::: gi|747 MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL 10 20 30 70 80 90 100 110 120 FLJ002 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK 40 50 60 70 80 90 130 140 150 160 FLJ002 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQA :::::::::::::::::::::::::::::::::::: gi|747 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSLASSRYPPFPSDYLALQLPEPSPL 100 110 120 130 140 150 gi|747 RPKREKRPRLPRKLKMAVGPPDCPVGGPLTFPGRGSGAGVGTTLTPLPPPKMPPPTILST 160 170 180 190 200 210 >>gi|114661932|ref|XP_001146930.1| PREDICTED: hypothetic (195 aa) initn: 867 init1: 867 opt: 867 Z-score: 913.0 bits: 175.5 E(): 3.7e-42 Smith-Waterman score: 867; 99.242% identity (100.000% similar) in 132 aa overlap (25-156:1-132) 10 20 30 40 50 60 FLJ002 AGAARQPLLGVAGGQTLGATPGPVMNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL :::::::::::::::::::::::::::::::::::: gi|114 MNGPADGEVDYKKKYRNLKRKLKFLIYEHECFQEEL 10 20 30 70 80 90 100 110 120 FLJ002 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RKAQRKLLKVSRDKSFLLDRLLQYENVDEDSSDSDATASSDNSETEGTPKLSDTPAPKRK 40 50 60 70 80 90 130 140 150 160 FLJ002 RSPPLGGAPSPSSLSLPPSTGFPLQASGVPSPYLSSERGQA :::::::.:::::::::::::::::::::::::::: gi|114 RSPPLGGTPSPSSLSLPPSTGFPLQASGVPSPYLSSLASPRYPPFPSDYLALQLPEPSPL 100 110 120 130 140 150 gi|114 RPKREKRPRLPRKLKMFSDAGSGDDALDGDDDLVIDIPE 160 170 180 190 161 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 20:44:55 2009 done: Fri Feb 27 20:49:08 2009 Total Scan time: 609.370 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]