# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj05150.fasta.nr -Q ../query/FLJ00335.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00335, 157 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827258 sequences Expectation_n fit: rho(ln(x))= 4.7718+/-0.00018; mu= 8.5532+/- 0.010 mean_var=58.4743+/-11.456, 0's: 33 Z-trim: 35 B-trim: 2 in 1/65 Lambda= 0.167723 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748536|dbj|BAC03405.1| FLJ00335 protein [Homo ( 157) 1073 267.2 7.3e-70 gi|33872239|gb|AAH09202.1| C14orf43 protein [Homo (1024) 933 233.8 5.2e-59 gi|33874552|gb|AAH15668.1| C14orf43 protein [Homo (1024) 933 233.8 5.2e-59 gi|118600725|gb|AAH25330.1| C14orf43 protein [Homo (1025) 933 233.8 5.2e-59 gi|33869706|gb|AAH06511.1| C14orf43 protein [Homo (1036) 933 233.8 5.2e-59 gi|118572229|sp|Q6PJG2.2|CN043_HUMAN RecName: Full (1045) 933 233.8 5.3e-59 gi|114653838|ref|XP_510053.2| PREDICTED: hypotheti (1099) 933 233.8 5.5e-59 gi|168278411|dbj|BAG11085.1| C14orf43 protein [syn (1099) 928 232.6 1.3e-58 gi|73964285|ref|XP_547897.2| PREDICTED: similar to (1147) 925 231.9 2.2e-58 gi|109084269|ref|XP_001086211.1| PREDICTED: simila (1102) 922 231.2 3.5e-58 gi|194038522|ref|XP_001926219.1| PREDICTED: simila ( 478) 914 229.0 6.8e-58 gi|119902881|ref|XP_582206.3| PREDICTED: similar t (1044) 913 229.0 1.5e-57 gi|194225180|ref|XP_001916459.1| PREDICTED: simila ( 836) 890 223.4 6e-56 gi|149025112|gb|EDL81479.1| similar to transcripti (1003) 871 218.8 1.7e-54 gi|109479645|ref|XP_001057760.1| PREDICTED: simila (1040) 871 218.8 1.7e-54 gi|109478463|ref|XP_234404.4| PREDICTED: similar t (1089) 871 218.8 1.8e-54 gi|148670819|gb|EDL02766.1| mCG140600 [Mus musculu (1003) 865 217.4 4.6e-54 gi|26349235|dbj|BAC38257.1| unnamed protein produc (1010) 865 217.4 4.6e-54 gi|74207083|dbj|BAE33318.1| unnamed protein produc (1011) 865 217.4 4.6e-54 gi|149263334|ref|XP_001477297.1| PREDICTED: hypoth (1089) 865 217.4 4.9e-54 gi|126282783|ref|XP_001375669.1| PREDICTED: hypoth (1016) 802 202.1 1.8e-49 gi|118091684|ref|XP_421167.2| PREDICTED: hypotheti (1087) 710 179.9 9.5e-43 gi|189531027|ref|XP_688904.3| PREDICTED: similar t (1027) 599 153.0 1.1e-34 gi|118087938|ref|XP_419445.2| PREDICTED: similar t (1143) 566 145.0 3.1e-32 gi|149641445|ref|XP_001509312.1| PREDICTED: simila (1177) 564 144.6 4.4e-32 gi|149069430|gb|EDM18871.1| transcriptional regula (1120) 561 143.8 7e-32 gi|148691602|gb|EDL23549.1| transcriptional regula ( 955) 556 142.6 1.4e-31 gi|126310017|ref|XP_001362185.1| PREDICTED: simila (1210) 557 142.9 1.4e-31 gi|78103363|sp|Q8BXJ2.1|TREF1_MOUSE RecName: Full= (1205) 556 142.6 1.7e-31 gi|148691603|gb|EDL23550.1| transcriptional regula (1213) 556 142.6 1.7e-31 gi|37747584|gb|AAH59215.1| Trerf1 protein [Mus mus (1225) 556 142.6 1.7e-31 gi|80474464|gb|AAI08417.1| Trerf1 protein [Mus mus (1225) 556 142.6 1.7e-31 gi|194039291|ref|XP_001926261.1| PREDICTED: transc (1095) 553 141.9 2.6e-31 gi|73972807|ref|XP_864918.1| PREDICTED: similar to ( 954) 552 141.6 2.8e-31 gi|73972809|ref|XP_864938.1| PREDICTED: similar to ( 966) 552 141.6 2.8e-31 gi|194039289|ref|XP_001928202.1| PREDICTED: transc (1202) 553 141.9 2.8e-31 gi|73972813|ref|XP_852084.1| PREDICTED: similar to (1200) 552 141.7 3.3e-31 gi|73972811|ref|XP_864953.1| PREDICTED: similar to (1221) 552 141.7 3.4e-31 gi|47210944|emb|CAF91113.1| unnamed protein produc ( 850) 549 140.8 4.2e-31 gi|119624497|gb|EAX04092.1| transcriptional regula ( 945) 549 140.9 4.5e-31 gi|7619735|emb|CAB88206.1| rapa-1 [Homo sapiens] ( 956) 549 140.9 4.6e-31 gi|119624498|gb|EAX04093.1| transcriptional regula ( 957) 549 140.9 4.6e-31 gi|7619737|emb|CAB88207.1| rapa-2 [Homo sapiens] ( 968) 549 140.9 4.6e-31 gi|194223506|ref|XP_001501378.2| PREDICTED: simila (1198) 550 141.2 4.6e-31 gi|194223508|ref|XP_001501390.2| PREDICTED: simila (1218) 550 141.2 4.7e-31 gi|119624494|gb|EAX04089.1| transcriptional regula (1106) 549 140.9 5.2e-31 gi|123233678|emb|CAD92528.2| transcriptional regul (1117) 549 140.9 5.2e-31 gi|123233677|emb|CAD92527.2| transcriptional regul (1129) 549 140.9 5.2e-31 gi|193785361|dbj|BAG54514.1| unnamed protein produ (1176) 549 140.9 5.4e-31 gi|76650351|ref|XP_870852.1| PREDICTED: similar to (1189) 549 140.9 5.5e-31 >>gi|21748536|dbj|BAC03405.1| FLJ00335 protein [Homo sap (157 aa) initn: 1073 init1: 1073 opt: 1073 Z-score: 1410.5 bits: 267.2 E(): 7.3e-70 Smith-Waterman score: 1073; 100.000% identity (100.000% similar) in 157 aa overlap (1-157:1-157) 10 20 30 40 50 60 FLJ003 GLTSCPFHSSRRINVGSRFQAEIPLMRDRALAAADPHKADLVWQPWEDLESSREKQRQVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 GLTSCPFHSSRRINVGSRFQAEIPLMRDRALAAADPHKADLVWQPWEDLESSREKQRQVE 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 DLLTAACSSIFPGAGTNQELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 DLLTAACSSIFPGAGTNQELALHCLHESRGDILETLNKLLLKKPLRPHNHPLATYHYTGS 70 80 90 100 110 120 130 140 150 FLJ003 DQWKMAERKLFNKGIAIYKKDFFLVQKLVSWALFQGK ::::::::::::::::::::::::::::::::::::: gi|217 DQWKMAERKLFNKGIAIYKKDFFLVQKLVSWALFQGK 130 140 150 >>gi|33872239|gb|AAH09202.1| C14orf43 protein [Homo sapi (1024 aa) initn: 932 init1: 932 opt: 933 Z-score: 1215.7 bits: 233.8 E(): 5.2e-59 Smith-Waterman score: 933; 95.833% identity (96.528% similar) in 144 aa overlap (6-149:716-859) 10 20 30 FLJ003 GLTSCPFHSSRRINVGSRFQAEIPLMRDRALAAAD : :::::::::::::::::::::::: gi|338 ITPKSAHRTLLRTNSAEVTPPVLSVMGEATPVSIEPRINVGSRFQAEIPLMRDRALAAAD 690 700 710 720 730 740 40 50 60 70 80 90 FLJ003 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|338 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET 750 760 770 780 790 800 100 110 120 130 140 150 FLJ003 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLVSWALFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|338 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVA 810 820 830 840 850 860 FLJ003 GK gi|338 QCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESPS 870 880 890 900 910 920 >>gi|33874552|gb|AAH15668.1| C14orf43 protein [Homo sapi (1024 aa) initn: 932 init1: 932 opt: 933 Z-score: 1215.7 bits: 233.8 E(): 5.2e-59 Smith-Waterman score: 933; 95.833% identity (96.528% similar) in 144 aa overlap (6-149:716-859) 10 20 30 FLJ003 GLTSCPFHSSRRINVGSRFQAEIPLMRDRALAAAD : :::::::::::::::::::::::: gi|338 ITPKSAHRTLLRTNSAEVTPPVLSVMGEATPVSIEPRINVGSRFQAEIPLMRDRALAAAD 690 700 710 720 730 740 40 50 60 70 80 90 FLJ003 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|338 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET 750 760 770 780 790 800 100 110 120 130 140 150 FLJ003 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLVSWALFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|338 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVA 810 820 830 840 850 860 FLJ003 GK gi|338 QCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESPS 870 880 890 900 910 920 >>gi|118600725|gb|AAH25330.1| C14orf43 protein [Homo sap (1025 aa) initn: 932 init1: 932 opt: 933 Z-score: 1215.7 bits: 233.8 E(): 5.2e-59 Smith-Waterman score: 933; 95.833% identity (96.528% similar) in 144 aa overlap (6-149:716-859) 10 20 30 FLJ003 GLTSCPFHSSRRINVGSRFQAEIPLMRDRALAAAD : :::::::::::::::::::::::: gi|118 ITPKSAHRTLLRTNSAEVTPPVLSVMGEATPVSIEPRINVGSRFQAEIPLMRDRALAAAD 690 700 710 720 730 740 40 50 60 70 80 90 FLJ003 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET 750 760 770 780 790 800 100 110 120 130 140 150 FLJ003 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLVSWALFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|118 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVA 810 820 830 840 850 860 FLJ003 GK gi|118 QCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESPS 870 880 890 900 910 920 >>gi|33869706|gb|AAH06511.1| C14orf43 protein [Homo sapi (1036 aa) initn: 932 init1: 932 opt: 933 Z-score: 1215.6 bits: 233.8 E(): 5.2e-59 Smith-Waterman score: 933; 95.833% identity (96.528% similar) in 144 aa overlap (6-149:727-870) 10 20 30 FLJ003 GLTSCPFHSSRRINVGSRFQAEIPLMRDRALAAAD : :::::::::::::::::::::::: gi|338 ITPKSAHRTLLRTNSAEVTPPVLSVMGEATPVSIEPRINVGSRFQAEIPLMRDRALAAAD 700 710 720 730 740 750 40 50 60 70 80 90 FLJ003 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|338 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET 760 770 780 790 800 810 100 110 120 130 140 150 FLJ003 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLVSWALFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|338 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVA 820 830 840 850 860 870 FLJ003 GK gi|338 QCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESPS 880 890 900 910 920 930 >>gi|118572229|sp|Q6PJG2.2|CN043_HUMAN RecName: Full=Unc (1045 aa) initn: 932 init1: 932 opt: 933 Z-score: 1215.5 bits: 233.8 E(): 5.3e-59 Smith-Waterman score: 933; 95.833% identity (96.528% similar) in 144 aa overlap (6-149:716-859) 10 20 30 FLJ003 GLTSCPFHSSRRINVGSRFQAEIPLMRDRALAAAD : :::::::::::::::::::::::: gi|118 ITPKSAHRTLLRTNSAEVTPPVLSVMGEATPVSIEPRINVGSRFQAEIPLMRDRALAAAD 690 700 710 720 730 740 40 50 60 70 80 90 FLJ003 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|118 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET 750 760 770 780 790 800 100 110 120 130 140 150 FLJ003 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLVSWALFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|118 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVA 810 820 830 840 850 860 FLJ003 GK gi|118 QCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESPS 870 880 890 900 910 920 >>gi|114653838|ref|XP_510053.2| PREDICTED: hypothetical (1099 aa) initn: 932 init1: 932 opt: 933 Z-score: 1215.2 bits: 233.8 E(): 5.5e-59 Smith-Waterman score: 933; 95.833% identity (96.528% similar) in 144 aa overlap (6-149:716-859) 10 20 30 FLJ003 GLTSCPFHSSRRINVGSRFQAEIPLMRDRALAAAD : :::::::::::::::::::::::: gi|114 ITPKSAHRTLLRTNSAEVTPPVLSVMGEATPVSIEPRINVGSRFQAEIPLMRDRALAAAD 690 700 710 720 730 740 40 50 60 70 80 90 FLJ003 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET 750 760 770 780 790 800 100 110 120 130 140 150 FLJ003 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLVSWALFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|114 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVA 810 820 830 840 850 860 FLJ003 GK gi|114 QCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESPS 870 880 890 900 910 920 >>gi|168278411|dbj|BAG11085.1| C14orf43 protein [synthet (1099 aa) initn: 927 init1: 927 opt: 928 Z-score: 1208.7 bits: 232.6 E(): 1.3e-58 Smith-Waterman score: 928; 95.139% identity (96.528% similar) in 144 aa overlap (6-149:716-859) 10 20 30 FLJ003 GLTSCPFHSSRRINVGSRFQAEIPLMRDRALAAAD : :::::::::::::::::::::::: gi|168 ITPKSAHRTLLRTNSAEVTPPVLSVMGEATPVSIEPRINVGSRFQAEIPLMRDRALAAAD 690 700 710 720 730 740 40 50 60 70 80 90 FLJ003 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|168 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGVGTNQELALHCLHESRGDILET 750 760 770 780 790 800 100 110 120 130 140 150 FLJ003 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLVSWALFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|168 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVA 810 820 830 840 850 860 FLJ003 GK gi|168 QCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQEEVEVDIKTSQKFPRVPLPRRESPS 870 880 890 900 910 920 >>gi|73964285|ref|XP_547897.2| PREDICTED: similar to tra (1147 aa) initn: 924 init1: 924 opt: 925 Z-score: 1204.5 bits: 231.9 E(): 2.2e-58 Smith-Waterman score: 925; 95.139% identity (96.528% similar) in 144 aa overlap (6-149:759-902) 10 20 30 FLJ003 GLTSCPFHSSRRINVGSRFQAEIPLMRDRALAAAD : :::::::::::::::::::::::: gi|739 ITPKSAHRTLLRSNSAEVTPPVLSVMGEATPVSIEPRINVGSRFQAEIPLMRDRALAAAD 730 740 750 760 770 780 40 50 60 70 80 90 FLJ003 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|739 PHKADLVWQPWESLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET 790 800 810 820 830 840 100 110 120 130 140 150 FLJ003 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLVSWALFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|739 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVA 850 860 870 880 890 900 FLJ003 GK gi|739 QCVEFYYTYKKQVKIGRNGTLTFGDVDTSDEKSAQEEVEVDIKTSQKFPRVPPPRRESPS 910 920 930 940 950 960 >>gi|109084269|ref|XP_001086211.1| PREDICTED: similar to (1102 aa) initn: 921 init1: 921 opt: 922 Z-score: 1200.8 bits: 231.2 E(): 3.5e-58 Smith-Waterman score: 922; 94.444% identity (96.528% similar) in 144 aa overlap (6-149:718-861) 10 20 30 FLJ003 GLTSCPFHSSRRINVGSRFQAEIPLMRDRALAAAD : ::::::::::::::.::::::::: gi|109 ITPKSAHRTLLRTNSAEVTPPVLSVMGEATPVSIEPRINVGSRFQAEIPLIRDRALAAAD 690 700 710 720 730 740 40 50 60 70 80 90 FLJ003 PHKADLVWQPWEDLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET ::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PHKADLVWQPWENLESSREKQRQVEDLLTAACSSIFPGAGTNQELALHCLHESRGDILET 750 760 770 780 790 800 100 110 120 130 140 150 FLJ003 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLVSWALFQ :::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|109 LNKLLLKKPLRPHNHPLATYHYTGSDQWKMAERKLFNKGIAIYKKDFFLVQKLIQTKTVA 810 820 830 840 850 860 FLJ003 GK gi|109 QCVEFYYTYKKQVKIGRNGTLTFGDVDASDEKSAQEEVEVDIKTSQKFPRVPLPRRESPS 870 880 890 900 910 920 157 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 16:24:26 2009 done: Fri Feb 27 16:28:37 2009 Total Scan time: 601.140 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]