# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj05155.fasta.nr -Q ../query/FLJ00214.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00214, 322 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7817115 sequences Expectation_n fit: rho(ln(x))= 6.5015+/-0.000204; mu= 4.7298+/- 0.011 mean_var=134.6218+/-25.677, 0's: 39 Z-trim: 58 B-trim: 337 in 1/66 Lambda= 0.110539 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|18676630|dbj|BAB84967.1| FLJ00214 protein [Homo ( 322) 2214 363.8 2.4e-98 gi|187954537|gb|AAI40825.1| Coiled-coil domain con (1476) 1716 285.0 5.9e-74 gi|21748560|dbj|BAC03417.1| FLJ00354 protein [Homo (1041) 1706 283.3 1.4e-73 gi|146424321|gb|AAI41867.1| CCDC88B protein [Homo (1240) 1706 283.4 1.6e-73 gi|88196790|ref|NP_115627.5| coiled-coil domain co (1476) 1706 283.4 1.8e-73 gi|167006538|sp|A6NC98.1|CC88B_HUMAN RecName: Full (1476) 1706 283.4 1.8e-73 gi|109109512|ref|XP_001114517.1| PREDICTED: simila ( 598) 1599 266.0 1.3e-68 gi|68085626|gb|AAH76600.1| Ccdc88b protein [Mus mu (1133) 889 153.0 2.4e-34 gi|187957182|gb|AAI57947.1| Coiled-coil domain con (1481) 889 153.1 3e-34 gi|167006539|sp|Q4QRL3.2|CC88B_MOUSE RecName: Full (1481) 889 153.1 3e-34 gi|109463441|ref|XP_001072042.1| PREDICTED: simila (1476) 828 143.4 2.5e-31 gi|114647365|ref|XP_508899.2| PREDICTED: similar t ( 562) 816 141.1 4.7e-31 gi|194218402|ref|XP_001916645.1| PREDICTED: simila (1157) 820 142.0 5.1e-31 gi|73983740|ref|XP_540883.2| PREDICTED: similar to (1348) 811 140.7 1.5e-30 gi|119919231|ref|XP_588183.3| PREDICTED: coiled-co (1463) 767 133.7 2.1e-28 gi|119594665|gb|EAW74259.1| hCG23402, isoform CRA_ ( 648) 693 121.6 4.2e-25 gi|119594663|gb|EAW74257.1| hCG23402, isoform CRA_ ( 763) 693 121.6 4.7e-25 gi|18676600|dbj|BAB84952.1| FLJ00198 protein [Homo ( 677) 621 110.1 1.2e-21 gi|119594664|gb|EAW74258.1| hCG23402, isoform CRA_ ( 296) 356 67.5 3.6e-09 gi|109459650|ref|XP_001063671.1| PREDICTED: hypoth ( 438) 250 50.7 0.00058 gi|119581541|gb|EAW61137.1| hCG1655920 [Homo sapie ( 276) 227 46.9 0.0053 gi|156235071|gb|ABU59854.1| conserved hypothetical ( 602) 232 48.0 0.0054 gi|194386828|dbj|BAG59780.1| unnamed protein produ ( 850) 232 48.1 0.0069 gi|2338034|gb|AAC58118.1| putative immediate early (1300) 232 48.3 0.0093 >>gi|18676630|dbj|BAB84967.1| FLJ00214 protein [Homo sap (322 aa) initn: 2214 init1: 2214 opt: 2214 Z-score: 1921.7 bits: 363.8 E(): 2.4e-98 Smith-Waterman score: 2214; 100.000% identity (100.000% similar) in 322 aa overlap (1-322:1-322) 10 20 30 40 50 60 FLJ002 LAEENVELELELQRSLEPPPGSPGEAPLAGAAPSLQDEVREAEAGRLRTLERENRELRGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 LAEENVELELELQRSLEPPPGSPGEAPLAGAAPSLQDEVREAEAGRLRTLERENRELRGL 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 LQVLQGQPGGQHPLLEAPREDPVLPVLEEAPQTPVAFDHSPQGLVQKARDGGPQALDLAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 LQVLQGQPGGQHPLLEAPREDPVLPVLEEAPQTPVAFDHSPQGLVQKARDGGPQALDLAP 70 80 90 100 110 120 130 140 150 160 170 180 FLJ002 PALDSVLEASAECPQAPDSDPQEAESPLQAAAMDPQASDWSPQESGSPVETQESPEKAGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 PALDSVLEASAECPQAPDSDPQEAESPLQAAAMDPQASDWSPQESGSPVETQESPEKAGR 130 140 150 160 170 180 190 200 210 220 230 240 FLJ002 RSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEARGLRQEGPEHKPGPSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 RSSLQSPASVAPPQGPGTKIQAPQLLGGETEGREAPQGELVPEARGLRQEGPEHKPGPSE 190 200 210 220 230 240 250 260 270 280 290 300 FLJ002 PSSVQLEEQEGPNQAWTWPRDKQRPESMTRGWKGRSGTQPGKNHSRSQKGLLRSRSGKAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 PSSVQLEEQEGPNQAWTWPRDKQRPESMTRGWKGRSGTQPGKNHSRSQKGLLRSRSGKAQ 250 260 270 280 290 300 310 320 FLJ002 SQGRAWPVVSQSRRPSGRRWHS :::::::::::::::::::::: gi|186 SQGRAWPVVSQSRRPSGRRWHS 310 320 >>gi|187954537|gb|AAI40825.1| Coiled-coil domain contain (1476 aa) initn: 1716 init1: 1716 opt: 1716 Z-score: 1484.0 bits: 285.0 E(): 5.9e-74 Smith-Waterman score: 1716; 100.000% identity (100.000% similar) in 254 aa overlap (1-254:415-668) 10 20 30 FLJ002 LAEENVELELELQRSLEPPPGSPGEAPLAG :::::::::::::::::::::::::::::: gi|187 HETQRENLLLRTRLGEAHAELDSLRHQVDQLAEENVELELELQRSLEPPPGSPGEAPLAG 390 400 410 420 430 440 40 50 60 70 80 90 FLJ002 AAPSLQDEVREAEAGRLRTLERENRELRGLLQVLQGQPGGQHPLLEAPREDPVLPVLEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|187 AAPSLQDEVREAEAGRLRTLERENRELRGLLQVLQGQPGGQHPLLEAPREDPVLPVLEEA 450 460 470 480 490 500 100 110 120 130 140 150 FLJ002 PQTPVAFDHSPQGLVQKARDGGPQALDLAPPALDSVLEASAECPQAPDSDPQEAESPLQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|187 PQTPVAFDHSPQGLVQKARDGGPQALDLAPPALDSVLEASAECPQAPDSDPQEAESPLQA 510 520 530 540 550 560 160 170 180 190 200 210 FLJ002 AAMDPQASDWSPQESGSPVETQESPEKAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|187 AAMDPQASDWSPQESGSPVETQESPEKAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGET 570 580 590 600 610 620 220 230 240 250 260 270 FLJ002 EGREAPQGELVPEARGLRQEGPEHKPGPSEPSSVQLEEQEGPNQAWTWPRDKQRPESMTR :::::::::::::::::::::::::::::::::::::::::::: gi|187 EGREAPQGELVPEARGLRQEGPEHKPGPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQ 630 640 650 660 670 680 280 290 300 310 320 FLJ002 GWKGRSGTQPGKNHSRSQKGLLRSRSGKAQSQGRAWPVVSQSRRPSGRRWHS gi|187 RLEGTVRDPAWQKPQQKSEGALEVQVWEGPIPGESLASGVAEQEALREEVAQLRRKAEAL 690 700 710 720 730 740 >>gi|21748560|dbj|BAC03417.1| FLJ00354 protein [Homo sap (1041 aa) initn: 1706 init1: 1706 opt: 1706 Z-score: 1477.3 bits: 283.3 E(): 1.4e-73 Smith-Waterman score: 1706; 99.606% identity (99.606% similar) in 254 aa overlap (1-254:422-675) 10 20 30 FLJ002 LAEENVELELELQRSLEPPPGSPGEAPLAG :::::::::::::::::::::::::::::: gi|217 HETQRENLLLRTRLGEAHAELDSLRHQVDQLAEENVELELELQRSLEPPPGSPGEAPLAG 400 410 420 430 440 450 40 50 60 70 80 90 FLJ002 AAPSLQDEVREAEAGRLRTLERENRELRGLLQVLQGQPGGQHPLLEAPREDPVLPVLEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 AAPSLQDEVREAEAGRLRTLERENRELRGLLQVLQGQPGGQHPLLEAPREDPVLPVLEEA 460 470 480 490 500 510 100 110 120 130 140 150 FLJ002 PQTPVAFDHSPQGLVQKARDGGPQALDLAPPALDSVLEASAECPQAPDSDPQEAESPLQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 PQTPVAFDHSPQGLVQKARDGGPQALDLAPPALDSVLEASAECPQAPDSDPQEAESPLQA 520 530 540 550 560 570 160 170 180 190 200 210 FLJ002 AAMDPQASDWSPQESGSPVETQESPEKAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 AAMDPQASDWSPQESGSPVETQESPEKAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGET 580 590 600 610 620 630 220 230 240 250 260 270 FLJ002 EGREAPQGELVPEARGLRQEGPEHKPGPSEPSSVQLEEQEGPNQAWTWPRDKQRPESMTR :::::::::::::: ::::::::::::::::::::::::::::: gi|217 EGREAPQGELVPEAWGLRQEGPEHKPGPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQ 640 650 660 670 680 690 280 290 300 310 320 FLJ002 GWKGRSGTQPGKNHSRSQKGLLRSRSGKAQSQGRAWPVVSQSRRPSGRRWHS gi|217 RLEGTVRDPAWQKPQQKSEGALEVQVWEGPIPGESLASGVAEQEALREEVAQLRRKAEAL 700 710 720 730 740 750 >>gi|146424321|gb|AAI41867.1| CCDC88B protein [Homo sapi (1240 aa) initn: 1706 init1: 1706 opt: 1706 Z-score: 1476.4 bits: 283.4 E(): 1.6e-73 Smith-Waterman score: 1706; 99.606% identity (99.606% similar) in 254 aa overlap (1-254:415-668) 10 20 30 FLJ002 LAEENVELELELQRSLEPPPGSPGEAPLAG :::::::::::::::::::::::::::::: gi|146 HETQRENLLLRTRLGEAHAELDSLRHQVDQLAEENVELELELQRSLEPPPGSPGEAPLAG 390 400 410 420 430 440 40 50 60 70 80 90 FLJ002 AAPSLQDEVREAEAGRLRTLERENRELRGLLQVLQGQPGGQHPLLEAPREDPVLPVLEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|146 AAPSLQDEVREAEAGRLRTLERENRELRGLLQVLQGQPGGQHPLLEAPREDPVLPVLEEA 450 460 470 480 490 500 100 110 120 130 140 150 FLJ002 PQTPVAFDHSPQGLVQKARDGGPQALDLAPPALDSVLEASAECPQAPDSDPQEAESPLQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|146 PQTPVAFDHSPQGLVQKARDGGPQALDLAPPALDSVLEASAECPQAPDSDPQEAESPLQA 510 520 530 540 550 560 160 170 180 190 200 210 FLJ002 AAMDPQASDWSPQESGSPVETQESPEKAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|146 AAMDPQASDWSPQESGSPVETQESPEKAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGET 570 580 590 600 610 620 220 230 240 250 260 270 FLJ002 EGREAPQGELVPEARGLRQEGPEHKPGPSEPSSVQLEEQEGPNQAWTWPRDKQRPESMTR :::::::::::::: ::::::::::::::::::::::::::::: gi|146 EGREAPQGELVPEAWGLRQEGPEHKPGPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQ 630 640 650 660 670 680 280 290 300 310 320 FLJ002 GWKGRSGTQPGKNHSRSQKGLLRSRSGKAQSQGRAWPVVSQSRRPSGRRWHS gi|146 RLEGTVRDPAWQKPQQKSEGALEVQVWEGPIPGESLASGVAEQEALREEVAQLRRKAEAL 690 700 710 720 730 740 >>gi|88196790|ref|NP_115627.5| coiled-coil domain contai (1476 aa) initn: 1706 init1: 1706 opt: 1706 Z-score: 1475.4 bits: 283.4 E(): 1.8e-73 Smith-Waterman score: 1706; 99.606% identity (99.606% similar) in 254 aa overlap (1-254:415-668) 10 20 30 FLJ002 LAEENVELELELQRSLEPPPGSPGEAPLAG :::::::::::::::::::::::::::::: gi|881 HETQRENLLLRTRLGEAHAELDSLRHQVDQLAEENVELELELQRSLEPPPGSPGEAPLAG 390 400 410 420 430 440 40 50 60 70 80 90 FLJ002 AAPSLQDEVREAEAGRLRTLERENRELRGLLQVLQGQPGGQHPLLEAPREDPVLPVLEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|881 AAPSLQDEVREAEAGRLRTLERENRELRGLLQVLQGQPGGQHPLLEAPREDPVLPVLEEA 450 460 470 480 490 500 100 110 120 130 140 150 FLJ002 PQTPVAFDHSPQGLVQKARDGGPQALDLAPPALDSVLEASAECPQAPDSDPQEAESPLQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|881 PQTPVAFDHSPQGLVQKARDGGPQALDLAPPALDSVLEASAECPQAPDSDPQEAESPLQA 510 520 530 540 550 560 160 170 180 190 200 210 FLJ002 AAMDPQASDWSPQESGSPVETQESPEKAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|881 AAMDPQASDWSPQESGSPVETQESPEKAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGET 570 580 590 600 610 620 220 230 240 250 260 270 FLJ002 EGREAPQGELVPEARGLRQEGPEHKPGPSEPSSVQLEEQEGPNQAWTWPRDKQRPESMTR :::::::::::::: ::::::::::::::::::::::::::::: gi|881 EGREAPQGELVPEAWGLRQEGPEHKPGPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQ 630 640 650 660 670 680 280 290 300 310 320 FLJ002 GWKGRSGTQPGKNHSRSQKGLLRSRSGKAQSQGRAWPVVSQSRRPSGRRWHS gi|881 RLEGTVRDPAWQKPQQKSEGALEVQVWEGPIPGESLASGVAEQEALREEVAQLRRKAEAL 690 700 710 720 730 740 >>gi|167006538|sp|A6NC98.1|CC88B_HUMAN RecName: Full=Coi (1476 aa) initn: 1706 init1: 1706 opt: 1706 Z-score: 1475.4 bits: 283.4 E(): 1.8e-73 Smith-Waterman score: 1706; 99.606% identity (99.606% similar) in 254 aa overlap (1-254:415-668) 10 20 30 FLJ002 LAEENVELELELQRSLEPPPGSPGEAPLAG :::::::::::::::::::::::::::::: gi|167 HETQRENLLLRTRLGEAHAELDSLRHQVDQLAEENVELELELQRSLEPPPGSPGEAPLAG 390 400 410 420 430 440 40 50 60 70 80 90 FLJ002 AAPSLQDEVREAEAGRLRTLERENRELRGLLQVLQGQPGGQHPLLEAPREDPVLPVLEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 AAPSLQDEVREAEAGRLRTLERENRELRGLLQVLQGQPGGQHPLLEAPREDPVLPVLEEA 450 460 470 480 490 500 100 110 120 130 140 150 FLJ002 PQTPVAFDHSPQGLVQKARDGGPQALDLAPPALDSVLEASAECPQAPDSDPQEAESPLQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 PQTPVAFDHSPQGLVQKARDGGPQALDLAPPALDSVLEASAECPQAPDSDPQEAESPLQA 510 520 530 540 550 560 160 170 180 190 200 210 FLJ002 AAMDPQASDWSPQESGSPVETQESPEKAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 AAMDPQASDWSPQESGSPVETQESPEKAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGET 570 580 590 600 610 620 220 230 240 250 260 270 FLJ002 EGREAPQGELVPEARGLRQEGPEHKPGPSEPSSVQLEEQEGPNQAWTWPRDKQRPESMTR :::::::::::::: ::::::::::::::::::::::::::::: gi|167 EGREAPQGELVPEAWGLRQEGPEHKPGPSEPSSVQLEEQEGPNQGLDLATGQAEAREHDQ 630 640 650 660 670 680 280 290 300 310 320 FLJ002 GWKGRSGTQPGKNHSRSQKGLLRSRSGKAQSQGRAWPVVSQSRRPSGRRWHS gi|167 RLEGTVRDPAWQKPQQKSEGALEVQVWEGPIPGESLASGVAEQEALREEVAQLRRKAEAL 690 700 710 720 730 740 >>gi|109109512|ref|XP_001114517.1| PREDICTED: similar to (598 aa) initn: 1590 init1: 1590 opt: 1599 Z-score: 1388.2 bits: 266.0 E(): 1.3e-68 Smith-Waterman score: 1599; 79.344% identity (88.852% similar) in 305 aa overlap (1-305:141-445) 10 20 30 FLJ002 LAEENVELELELQRSLEPPPGSPGEAPLAG :::::::::::::::::::::::::::: : gi|109 HETQRENLLLRTRLGEAHAELDSLRHQVDQLAEENVELELELQRSLEPPPGSPGEAPLPG 120 130 140 150 160 170 40 50 60 70 80 90 FLJ002 AAPSLQDEVREAEAGRLRTLERENRELRGLLQVLQGQPGGQHPLLEAPREDPVLPVLEEA ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|109 AAPSLQDEVREAEAGRLRTLERENQELRGLLQVLQGQPGGQHPLLEAPREDPVLPVLEEA 180 190 200 210 220 230 100 110 120 130 140 150 FLJ002 PQTPVAFDHSPQGLVQKARDGGPQALDLAPPALDSVLEASAECPQAPDSDPQEAESPLQA :::::: :::::::.:::::::::::.:: :: ::::..::::::::::::::::::::: gi|109 PQTPVASDHSPQGLAQKARDGGPQALNLASPASDSVLKGSAECPQAPDSDPQEAESPLQA 240 250 260 270 280 290 160 170 180 190 200 210 FLJ002 AAMDPQASDWSPQESGSPVETQESPEKAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGET :..:::::::::::: :::::::::::: :::::::::::::::::::::::::::::: gi|109 ATVDPQASDWSPQESDCPVETQESPEKAGCRSSLQSPASVAPPQGPGTKIQAPQLLGGET 300 310 320 330 340 350 220 230 240 250 260 270 FLJ002 EGREAPQGELVPEARGLRQEGPEHKPGPSEPSSVQLEEQEGPNQAWTWPRDKQRPESMTR :::::::::::::::::::: ::::: :::::::::::.:::::. . . . . gi|109 EGREAPQGELVPEARGLRQEDPEHKPRPSEPSSVQLEEREGPNQGLDLATGQTEAREHDQ 360 370 380 390 400 410 280 290 300 310 320 FLJ002 GWKGRSGTQPGKNHSRSQKGLLRSRSGKAQSQGRAWPVVSQSRRPSGRRWHS .: :. .. .....: :. .. .. :.. gi|109 RLEGMVGNPAWQKPQQKSEGALEVQAWEGPVTGESLASGVAEQEALRKEVAQLRRKAEAL 420 430 440 450 460 470 gi|109 GAELEAQARKLEAQDMEAARLSKELAQARRAEAEAHREAEAQAWEQARLQEAVEAAGREL 480 490 500 510 520 530 >>gi|68085626|gb|AAH76600.1| Ccdc88b protein [Mus muscul (1133 aa) initn: 704 init1: 597 opt: 889 Z-score: 772.7 bits: 153.0 E(): 2.4e-34 Smith-Waterman score: 889; 52.759% identity (72.759% similar) in 290 aa overlap (1-285:72-359) 10 20 30 FLJ002 LAEENVELELELQRSLEPPPGSPGEAPLAG :.:::::::::::::::::::::::: : : gi|680 HETQRENLLLRTRLGEAHADLDSLRHQLEQLVEENVELELELQRSLEPPPGSPGEASLPG 50 60 70 80 90 100 40 50 60 70 80 FLJ002 AAPSLQDEVREAEAGRLRTLERENRELRGLLQVLQGQPGGQHPLLEAPREDPVLP-VLEE ::::::::::::::::::..::::::::: ::.::.: :.:::::: ::. : : .. gi|680 AAPSLQDEVREAEAGRLRAVERENRELRGQLQMLQAQLGSQHPLLEEQRENSRQPPVPNR 110 120 130 140 150 160 90 100 110 120 130 140 FLJ002 APQTPVAFDHSPQGLVQKARDGGPQALDLAPPALDSVLEASAECPQAPDSDPQEAESPLQ : :: :. ::::. . . : ..::: :: : . : .: ::::: : : ::::: gi|680 DPATPSALHHSPQSPACQIGGEGSESLDLPSPASYSDITRSPKCSQAPDSHP-ELESPLQ 170 180 190 200 210 220 150 160 170 180 190 200 FLJ002 AAAMDPQASDWSPQESGSPVETQESPEKAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGE ...:::.:: . ::: :::.. ::.:.: :::: ::::: ..:.. .::: : gi|680 MVSQDPQTSDQALQESDPTVETHQCLEKSGHRVPLQSPIVWDPPQGPEVRIEVQELLG-E 230 240 250 260 270 210 220 230 240 250 260 FLJ002 TEGREAPQGELVPEARGLRQEGPEHKPGPSEPSSVQ-LEEQEGPNQAWTWPRDKQ---RP : .::::::::: .:. :.::.:. .: .: . . :..:.. .. .... : gi|680 TGSREAPQGELVHKAQVLKQESPKCRPRSAELTLREPLKDQKALDRELELSKQQKETGRH 280 290 300 310 320 330 270 280 290 300 310 320 FLJ002 ESMTRGWKGRSGTQPGKNHSRSQKGLLRSRSGKAQSQGRAWPVVSQSRRPSGRRWHS :. .: ... : : .. : gi|680 EQRPKGLESKLGPQKPQQTSEGVPDAWSREEPTPGETLVSAIPEEQALRDEVAQLRREVA 340 350 360 370 380 390 >>gi|187957182|gb|AAI57947.1| Coiled-coil domain contain (1481 aa) initn: 704 init1: 597 opt: 889 Z-score: 771.2 bits: 153.1 E(): 3e-34 Smith-Waterman score: 889; 52.759% identity (72.759% similar) in 290 aa overlap (1-285:420-707) 10 20 30 FLJ002 LAEENVELELELQRSLEPPPGSPGEAPLAG :.:::::::::::::::::::::::: : : gi|187 HETQRENLLLRTRLGEAHADLDSLRHQLEQLVEENVELELELQRSLEPPPGSPGEASLPG 390 400 410 420 430 440 40 50 60 70 80 FLJ002 AAPSLQDEVREAEAGRLRTLERENRELRGLLQVLQGQPGGQHPLLEAPREDPVLP-VLEE ::::::::::::::::::..::::::::: ::.::.: :.:::::: ::. : : .. gi|187 AAPSLQDEVREAEAGRLRAVERENRELRGQLQMLQAQLGSQHPLLEEQRENSRQPPVPNR 450 460 470 480 490 500 90 100 110 120 130 140 FLJ002 APQTPVAFDHSPQGLVQKARDGGPQALDLAPPALDSVLEASAECPQAPDSDPQEAESPLQ : :: :. ::::. . . : ..::: :: : . : .: ::::: : : ::::: gi|187 DPATPSALHHSPQSPACQIGGEGSESLDLPSPASYSDITRSPKCSQAPDSHP-ELESPLQ 510 520 530 540 550 560 150 160 170 180 190 200 FLJ002 AAAMDPQASDWSPQESGSPVETQESPEKAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGE ...:::.:: . ::: :::.. ::.:.: :::: ::::: ..:.. .::: : gi|187 MVSQDPQTSDQALQESDPTVETHQCLEKSGHRVPLQSPIVWDPPQGPEVRIEVQELLG-E 570 580 590 600 610 620 210 220 230 240 250 260 FLJ002 TEGREAPQGELVPEARGLRQEGPEHKPGPSEPSSVQ-LEEQEGPNQAWTWPRDKQ---RP : .::::::::: .:. :.::.:. .: .: . . :..:.. .. .... : gi|187 TGSREAPQGELVHKAQVLKQESPKCRPRSAELTLREPLKDQKALDRELELSKQQKETGRH 630 640 650 660 670 680 270 280 290 300 310 320 FLJ002 ESMTRGWKGRSGTQPGKNHSRSQKGLLRSRSGKAQSQGRAWPVVSQSRRPSGRRWHS :. .: ... : : .. : gi|187 EQRPKGLESKLGPQKPQQTSEGVPDAWSREEPTPGETLVSAIPEEQALRDEVAQLRREVA 690 700 710 720 730 740 >>gi|167006539|sp|Q4QRL3.2|CC88B_MOUSE RecName: Full=Coi (1481 aa) initn: 704 init1: 597 opt: 889 Z-score: 771.2 bits: 153.1 E(): 3e-34 Smith-Waterman score: 889; 52.759% identity (72.759% similar) in 290 aa overlap (1-285:420-707) 10 20 30 FLJ002 LAEENVELELELQRSLEPPPGSPGEAPLAG :.:::::::::::::::::::::::: : : gi|167 HETQRENLLLRTRLGEAHADLDSLRHQLEQLVEENVELELELQRSLEPPPGSPGEASLPG 390 400 410 420 430 440 40 50 60 70 80 FLJ002 AAPSLQDEVREAEAGRLRTLERENRELRGLLQVLQGQPGGQHPLLEAPREDPVLP-VLEE ::::::::::::::::::..::::::::: ::.::.: :.:::::: ::. : : .. gi|167 AAPSLQDEVREAEAGRLRAVERENRELRGQLQMLQAQLGSQHPLLEEQRENSRQPPVPNR 450 460 470 480 490 500 90 100 110 120 130 140 FLJ002 APQTPVAFDHSPQGLVQKARDGGPQALDLAPPALDSVLEASAECPQAPDSDPQEAESPLQ : :: :. ::::. . . : ..::: :: : . : .: ::::: : : ::::: gi|167 DPATPSALHHSPQSPACQIGGEGSESLDLPSPASYSDITRSPKCSQAPDSHP-ELESPLQ 510 520 530 540 550 560 150 160 170 180 190 200 FLJ002 AAAMDPQASDWSPQESGSPVETQESPEKAGRRSSLQSPASVAPPQGPGTKIQAPQLLGGE ...:::.:: . ::: :::.. ::.:.: :::: ::::: ..:.. .::: : gi|167 MVSQDPQTSDQALQESDPTVETHQCLEKSGHRVPLQSPIVWDPPQGPEVRIEVQELLG-E 570 580 590 600 610 620 210 220 230 240 250 260 FLJ002 TEGREAPQGELVPEARGLRQEGPEHKPGPSEPSSVQ-LEEQEGPNQAWTWPRDKQ---RP : .::::::::: .:. :.::.:. .: .: . . :..:.. .. .... : gi|167 TGSREAPQGELVHKAQVLKQESPKCRPRSAELTLREPLKDQKALDRELELSKQQKETGRH 630 640 650 660 670 680 270 280 290 300 310 320 FLJ002 ESMTRGWKGRSGTQPGKNHSRSQKGLLRSRSGKAQSQGRAWPVVSQSRRPSGRRWHS :. .: ... : : .. : gi|167 EQRPKGLESKLGPQKPQQTSEGVPDAWSREEPTPGETLVSAIPEEQALRDEVAQLRREVA 690 700 710 720 730 740 322 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 21:05:36 2009 done: Fri Feb 27 21:11:24 2009 Total Scan time: 801.840 Total Display time: 0.100 Function used was FASTA [version 34.26.5 April 26, 2007]