# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj05401.fasta.nr -Q ../query/FLJ00216.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00216, 270 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7826496 sequences Expectation_n fit: rho(ln(x))= 4.8743+/-0.000185; mu= 11.5239+/- 0.010 mean_var=74.6314+/-14.347, 0's: 36 Z-trim: 37 B-trim: 105 in 1/65 Lambda= 0.148461 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|18676634|dbj|BAB84969.1| FLJ00216 protein [Homo ( 270) 2009 439.0 4.1e-121 gi|219521786|gb|AAI36392.1| UAP1L1 protein [Homo s ( 373) 583 133.7 4.5e-29 gi|193787837|dbj|BAG53040.1| unnamed protein produ ( 381) 583 133.7 4.6e-29 gi|50949453|emb|CAH10651.1| hypothetical protein [ ( 381) 583 133.7 4.6e-29 gi|119608748|gb|EAW88342.1| UDP-N-acteylglucosamin ( 384) 583 133.7 4.6e-29 gi|34535943|dbj|BAC87482.1| unnamed protein produc ( 384) 583 133.7 4.6e-29 gi|114627660|ref|XP_001135010.1| PREDICTED: UDP-N- ( 384) 583 133.7 4.6e-29 gi|76780205|gb|AAI06036.1| UAP1L1 protein [Homo sa ( 421) 583 133.7 5e-29 gi|114627658|ref|XP_520388.2| PREDICTED: UDP-N-act ( 507) 583 133.8 5.7e-29 gi|172046714|sp|Q3KQV9.2|UAP1L_HUMAN RecName: Full ( 507) 583 133.8 5.7e-29 gi|149039378|gb|EDL93598.1| rCG45729 [Rattus norve ( 165) 455 105.9 4.5e-21 gi|197245704|gb|AAI68670.1| Uap1l1 protein [Rattus ( 507) 455 106.4 1e-20 gi|45872600|gb|AAH68207.1| Uap1l1 protein [Mus mus ( 310) 434 101.7 1.6e-19 gi|120538529|gb|AAI30031.1| Uap1l1 protein [Mus mu ( 381) 434 101.8 1.9e-19 gi|194226068|ref|XP_001497776.2| PREDICTED: simila ( 410) 433 101.6 2.3e-19 gi|123796811|sp|Q3TW96.1|UAP1L_MOUSE RecName: Full ( 507) 434 101.9 2.3e-19 gi|28175154|gb|AAH43307.1| Uap1l1 protein [Mus mus ( 509) 434 101.9 2.3e-19 gi|26346821|dbj|BAC37059.1| unnamed protein produc ( 510) 434 101.9 2.3e-19 gi|119608747|gb|EAW88341.1| UDP-N-acteylglucosamin ( 537) 429 100.8 5e-19 gi|47847474|dbj|BAD21409.1| mFLJ00216 protein [Mus ( 418) 421 99.0 1.4e-18 gi|73967465|ref|XP_848562.1| PREDICTED: similar to ( 437) 418 98.4 2.2e-18 gi|57092163|ref|XP_548360.1| PREDICTED: similar to ( 504) 418 98.5 2.5e-18 gi|118099099|ref|XP_415568.2| PREDICTED: similar t ( 501) 406 95.9 1.5e-17 gi|52354762|gb|AAH82877.1| LOC494771 protein [Xeno ( 511) 399 94.4 4.2e-17 gi|123892365|sp|Q28CH3.1|UAP1L_XENTR UDP-N-acetylh ( 511) 391 92.7 1.4e-16 gi|149588282|ref|XP_001511500.1| PREDICTED: simila ( 409) 385 91.3 2.8e-16 gi|213624487|gb|AAI71173.1| UDP-N-acteylglucosamin ( 511) 386 91.6 2.9e-16 gi|28279882|gb|AAH44137.1| UDP-N-acteylglucosamine ( 504) 336 80.9 4.8e-13 gi|82209691|sp|Q7ZWD4.1|UAP1L_DANRE RecName: Full= ( 505) 332 80.0 8.6e-13 gi|210106157|gb|EEA54152.1| hypothetical protein B ( 511) 330 79.6 1.2e-12 gi|194210483|ref|XP_001491731.2| PREDICTED: UDP-N- ( 505) 329 79.4 1.3e-12 gi|74006128|ref|XP_545781.2| PREDICTED: similar to ( 505) 329 79.4 1.3e-12 gi|14424722|gb|AAH09377.1| UDP-N-acteylglucosamine ( 505) 327 79.0 1.8e-12 gi|109017885|ref|XP_001118204.1| PREDICTED: UDP-N- ( 505) 327 79.0 1.8e-12 gi|55665560|emb|CAH72978.1| UDP-N-acteylglucosamin ( 505) 327 79.0 1.8e-12 gi|194036852|ref|XP_001928678.1| PREDICTED: UDP-N- ( 505) 325 78.5 2.4e-12 gi|126306163|ref|XP_001363369.1| PREDICTED: simila ( 505) 324 78.3 2.8e-12 gi|26338836|dbj|BAC33089.1| unnamed protein produc ( 505) 322 77.9 3.8e-12 gi|3273316|dbj|BAA31202.1| UDP-N-acetylglucosamine ( 505) 319 77.2 5.9e-12 gi|115784368|ref|XP_779933.2| PREDICTED: hypotheti ( 489) 316 76.6 9.1e-12 gi|50414927|gb|AAH77836.1| Uap1-prov protein [Xeno ( 507) 315 76.4 1.1e-11 gi|156227056|gb|EDO47862.1| predicted protein [Nem ( 483) 293 71.7 2.7e-10 gi|215502506|gb|EEC12000.1| UDP-N-acetylglucosamin ( 477) 276 68.0 3.4e-09 gi|210088384|gb|EEA36723.1| hypothetical protein B ( 288) 263 65.0 1.6e-08 gi|198435316|ref|XP_002132147.1| PREDICTED: simila ( 501) 264 65.5 2.1e-08 gi|74006124|ref|XP_860005.1| PREDICTED: similar to ( 471) 258 64.2 4.8e-08 gi|125858500|gb|AAI29599.1| LOC100037187 protein [ ( 523) 254 63.3 9.5e-08 gi|149058104|gb|EDM09261.1| rCG46446, isoform CRA_ ( 260) 249 62.0 1.2e-07 gi|74006122|ref|XP_849867.1| PREDICTED: similar to ( 522) 252 62.9 1.3e-07 gi|148707215|gb|EDL39162.1| UDP-N-acetylglucosamin ( 429) 250 62.4 1.5e-07 >>gi|18676634|dbj|BAB84969.1| FLJ00216 protein [Homo sap (270 aa) initn: 2009 init1: 2009 opt: 2009 Z-score: 2330.6 bits: 439.0 E(): 4.1e-121 Smith-Waterman score: 2009; 100.000% identity (100.000% similar) in 270 aa overlap (1-270:1-270) 10 20 30 40 50 60 FLJ002 GSQGPRGQVSGRRPEGALGPEGKQPLRWGHRESLGLWTWEDSSATSRTFHCPHPWLGEVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 GSQGPRGQVSGRRPEGALGPEGKQPLRWGHRESLGLWTWEDSSATSRTFHCPHPWLGEVS 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 WPGCQGGSQGLWPSLQGSQGWAFGCWKWLLGLGHPWRLRSKNTQYLRGLLPRLAAHGTRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 WPGCQGGSQGLWPSLQGSQGWAFGCWKWLLGLGHPWRLRSKNTQYLRGLLPRLAAHGTRP 70 80 90 100 110 120 130 140 150 160 170 180 FLJ002 SLCHWKPGPALTCPDQGLCAGTWVTSPFPTRNFAALEVLREEEFSPLKNAEPADRDSPRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 SLCHWKPGPALTCPDQGLCAGTWVTSPFPTRNFAALEVLREEEFSPLKNAEPADRDSPRT 130 140 150 160 170 180 190 200 210 220 230 240 FLJ002 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEVRAAH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEVRAAH 190 200 210 220 230 240 250 260 270 FLJ002 PYLGLFWCQVWNTIWGEVAARVETAQLYLG :::::::::::::::::::::::::::::: gi|186 PYLGLFWCQVWNTIWGEVAARVETAQLYLG 250 260 270 >>gi|219521786|gb|AAI36392.1| UAP1L1 protein [Homo sapie (373 aa) initn: 583 init1: 583 opt: 583 Z-score: 678.1 bits: 133.7 E(): 4.5e-29 Smith-Waterman score: 583; 98.824% identity (100.000% similar) in 85 aa overlap (151-235:259-343) 130 140 150 160 170 180 FLJ002 SLCHWKPGPALTCPDQGLCAGTWVTSPFPTRNFAALEVLREEEFSPLKNAEPADRDSPRT .::::::::::::::::::::::::::::: gi|219 YVDEEGNLVKPLKPNGIKMEKFVFDVFRFAKNFAALEVLREEEFSPLKNAEPADRDSPRT 230 240 250 260 270 280 190 200 210 220 230 240 FLJ002 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEVRAAH ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|219 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEGLEVY 290 300 310 320 330 340 250 260 270 FLJ002 PYLGLFWCQVWNTIWGEVAARVETAQLYLG gi|219 LQGREFQSPLILDEDQAREPQLQES 350 360 370 >>gi|193787837|dbj|BAG53040.1| unnamed protein product [ (381 aa) initn: 583 init1: 583 opt: 583 Z-score: 678.0 bits: 133.7 E(): 4.6e-29 Smith-Waterman score: 583; 98.824% identity (100.000% similar) in 85 aa overlap (151-235:267-351) 130 140 150 160 170 180 FLJ002 SLCHWKPGPALTCPDQGLCAGTWVTSPFPTRNFAALEVLREEEFSPLKNAEPADRDSPRT .::::::::::::::::::::::::::::: gi|193 YVDEEGNLVKPLKPNGIKMEKFVFDVFRFAKNFAALEVLREEEFSPLKNAEPADRDSPRT 240 250 260 270 280 290 190 200 210 220 230 240 FLJ002 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEVRAAH ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEGLEVY 300 310 320 330 340 350 250 260 270 FLJ002 PYLGLFWCQVWNTIWGEVAARVETAQLYLG gi|193 LQGREFQSPLILDEDQAREPQLQES 360 370 380 >>gi|50949453|emb|CAH10651.1| hypothetical protein [Homo (381 aa) initn: 583 init1: 583 opt: 583 Z-score: 678.0 bits: 133.7 E(): 4.6e-29 Smith-Waterman score: 583; 98.824% identity (100.000% similar) in 85 aa overlap (151-235:267-351) 130 140 150 160 170 180 FLJ002 SLCHWKPGPALTCPDQGLCAGTWVTSPFPTRNFAALEVLREEEFSPLKNAEPADRDSPRT .::::::::::::::::::::::::::::: gi|509 YVDEEGNLVKPLKPNGIKMEKFVFDVFRFAKNFAALEVLREEEFSPLKNAEPADRDSPRT 240 250 260 270 280 290 190 200 210 220 230 240 FLJ002 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEVRAAH ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|509 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEGLEVY 300 310 320 330 340 350 250 260 270 FLJ002 PYLGLFWCQVWNTIWGEVAARVETAQLYLG gi|509 LQGREFQSPLILDEDQAREPQLQES 360 370 380 >>gi|119608748|gb|EAW88342.1| UDP-N-acteylglucosamine py (384 aa) initn: 583 init1: 583 opt: 583 Z-score: 677.9 bits: 133.7 E(): 4.6e-29 Smith-Waterman score: 583; 98.824% identity (100.000% similar) in 85 aa overlap (151-235:270-354) 130 140 150 160 170 180 FLJ002 SLCHWKPGPALTCPDQGLCAGTWVTSPFPTRNFAALEVLREEEFSPLKNAEPADRDSPRT .::::::::::::::::::::::::::::: gi|119 YVDEEGNLVKPLKPNGIKMEKFVFDVFRFAKNFAALEVLREEEFSPLKNAEPADRDSPRT 240 250 260 270 280 290 190 200 210 220 230 240 FLJ002 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEVRAAH ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEGLEVY 300 310 320 330 340 350 250 260 270 FLJ002 PYLGLFWCQVWNTIWGEVAARVETAQLYLG gi|119 LQGREFQSPLILDEDQAREPQLQES 360 370 380 >>gi|34535943|dbj|BAC87482.1| unnamed protein product [H (384 aa) initn: 583 init1: 583 opt: 583 Z-score: 677.9 bits: 133.7 E(): 4.6e-29 Smith-Waterman score: 583; 98.824% identity (100.000% similar) in 85 aa overlap (151-235:270-354) 130 140 150 160 170 180 FLJ002 SLCHWKPGPALTCPDQGLCAGTWVTSPFPTRNFAALEVLREEEFSPLKNAEPADRDSPRT .::::::::::::::::::::::::::::: gi|345 YVDEEGNLVKPLKPNGIKMEKFVFDVFRFAKNFAALEVLREEEFSPLKNAEPADRDSPRT 240 250 260 270 280 290 190 200 210 220 230 240 FLJ002 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEVRAAH ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|345 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEGLEVY 300 310 320 330 340 350 250 260 270 FLJ002 PYLGLFWCQVWNTIWGEVAARVETAQLYLG gi|345 LQGREFQSPLILDEDQAREPQLQES 360 370 380 >>gi|114627660|ref|XP_001135010.1| PREDICTED: UDP-N-acte (384 aa) initn: 583 init1: 583 opt: 583 Z-score: 677.9 bits: 133.7 E(): 4.6e-29 Smith-Waterman score: 583; 98.824% identity (100.000% similar) in 85 aa overlap (151-235:270-354) 130 140 150 160 170 180 FLJ002 SLCHWKPGPALTCPDQGLCAGTWVTSPFPTRNFAALEVLREEEFSPLKNAEPADRDSPRT .::::::::::::::::::::::::::::: gi|114 YVDEEGNLVKPLKPNGIKMEKFVFDVFRFAKNFAALEVLREEEFSPLKNAEPADRDSPRT 240 250 260 270 280 290 190 200 210 220 230 240 FLJ002 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEVRAAH ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEGLEVY 300 310 320 330 340 350 250 260 270 FLJ002 PYLGLFWCQVWNTIWGEVAARVETAQLYLG gi|114 LQGREFQSPLILDEDQARELQLQES 360 370 380 >>gi|76780205|gb|AAI06036.1| UAP1L1 protein [Homo sapien (421 aa) initn: 583 init1: 583 opt: 583 Z-score: 677.4 bits: 133.7 E(): 5e-29 Smith-Waterman score: 583; 98.824% identity (100.000% similar) in 85 aa overlap (151-235:307-391) 130 140 150 160 170 180 FLJ002 SLCHWKPGPALTCPDQGLCAGTWVTSPFPTRNFAALEVLREEEFSPLKNAEPADRDSPRT .::::::::::::::::::::::::::::: gi|767 YVDEEGNLVKPLKPNGIKMEKFVFDVFRFAKNFAALEVLREEEFSPLKNAEPADRDSPRT 280 290 300 310 320 330 190 200 210 220 230 240 FLJ002 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEVRAAH ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|767 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEGLEVY 340 350 360 370 380 390 250 260 270 FLJ002 PYLGLFWCQVWNTIWGEVAARVETAQLYLG gi|767 LQGREFQSPLILDEDQAREPQLQES 400 410 420 >>gi|114627658|ref|XP_520388.2| PREDICTED: UDP-N-acteylg (507 aa) initn: 583 init1: 583 opt: 583 Z-score: 676.4 bits: 133.8 E(): 5.7e-29 Smith-Waterman score: 583; 98.824% identity (100.000% similar) in 85 aa overlap (151-235:393-477) 130 140 150 160 170 180 FLJ002 SLCHWKPGPALTCPDQGLCAGTWVTSPFPTRNFAALEVLREEEFSPLKNAEPADRDSPRT .::::::::::::::::::::::::::::: gi|114 YVDEEGNLVKPLKPNGIKMEKFVFDVFRFAKNFAALEVLREEEFSPLKNAEPADRDSPRT 370 380 390 400 410 420 190 200 210 220 230 240 FLJ002 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEVRAAH ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEGLEVY 430 440 450 460 470 480 250 260 270 FLJ002 PYLGLFWCQVWNTIWGEVAARVETAQLYLG gi|114 LQGREFQSPLILDEDQARELQLQES 490 500 >>gi|172046714|sp|Q3KQV9.2|UAP1L_HUMAN RecName: Full=UDP (507 aa) initn: 583 init1: 583 opt: 583 Z-score: 676.4 bits: 133.8 E(): 5.7e-29 Smith-Waterman score: 583; 98.824% identity (100.000% similar) in 85 aa overlap (151-235:393-477) 130 140 150 160 170 180 FLJ002 SLCHWKPGPALTCPDQGLCAGTWVTSPFPTRNFAALEVLREEEFSPLKNAEPADRDSPRT .::::::::::::::::::::::::::::: gi|172 YVDEEGNLVKPLKPNGIKMEKFVFDVFRFAKNFAALEVLREEEFSPLKNAEPADRDSPRT 370 380 390 400 410 420 190 200 210 220 230 240 FLJ002 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEVRAAH ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 ARQALLTQHYRWALRAGARFLDAHGAWLPELPSLPPNGDPPAICEISPLVSYSGEGLEVY 430 440 450 460 470 480 250 260 270 FLJ002 PYLGLFWCQVWNTIWGEVAARVETAQLYLG gi|172 LQGREFQSPLILDEDQAREPQLQES 490 500 270 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 21:19:09 2009 done: Fri Feb 27 21:24:34 2009 Total Scan time: 755.300 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]