# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj05575.fasta.nr -Q ../query/FLJ00218.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00218, 174 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7823779 sequences Expectation_n fit: rho(ln(x))= 4.7410+/-0.000182; mu= 10.7845+/- 0.010 mean_var=69.0141+/-13.333, 0's: 39 Z-trim: 60 B-trim: 0 in 0/67 Lambda= 0.154385 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|18676638|dbj|BAB84971.1| FLJ00218 protein [Homo ( 174) 1228 281.4 4.7e-74 gi|119584603|gb|EAW64199.1| hCG27236, isoform CRA_ ( 392) 796 185.5 7.8e-45 gi|119584605|gb|EAW64201.1| hCG27236, isoform CRA_ ( 873) 796 185.8 1.4e-44 gi|119584602|gb|EAW64198.1| hCG27236, isoform CRA_ (1043) 796 185.9 1.6e-44 gi|48474948|sp|Q9C0E4.3|GRIP2_HUMAN RecName: Full= (1043) 796 185.9 1.6e-44 gi|122937249|ref|NP_001073892.1| glutamate recepto (1141) 796 185.9 1.7e-44 gi|109098018|ref|XP_001090379.1| PREDICTED: glutam (1196) 795 185.7 2.1e-44 gi|194221051|ref|XP_001914958.1| PREDICTED: glutam (1085) 781 182.5 1.7e-43 gi|73984538|ref|XP_858433.1| PREDICTED: similar to (1001) 773 180.7 5.4e-43 gi|73984540|ref|XP_541752.2| PREDICTED: similar to (1043) 773 180.7 5.6e-43 gi|148666892|gb|EDK99308.1| mCG130431, isoform CRA ( 747) 769 179.7 8.1e-43 gi|148666891|gb|EDK99307.1| mCG130431, isoform CRA (1042) 769 179.8 1e-42 gi|149255250|ref|XP_984210.2| PREDICTED: glutamate (1071) 759 177.6 4.9e-42 gi|149255676|ref|XP_001000130.2| PREDICTED: simila (1071) 758 177.4 5.8e-42 gi|149036757|gb|EDL91375.1| glutamate receptor int ( 533) 754 176.2 6.4e-42 gi|149036761|gb|EDL91379.1| glutamate receptor int ( 783) 754 176.4 8.5e-42 gi|149036758|gb|EDL91376.1| glutamate receptor int ( 824) 754 176.4 8.8e-42 gi|46397437|sp|Q9WTW1.1|GRIP2_RAT RecName: Full=Gl (1043) 754 176.5 1e-41 gi|119584601|gb|EAW64197.1| hCG27236, isoform CRA_ ( 169) 744 173.6 1.3e-41 gi|126336465|ref|XP_001376910.1| PREDICTED: simila (1193) 719 168.8 2.6e-39 gi|189042255|sp|A8E0R9.2|GRIP2_XENLA RecName: Full (1083) 700 164.5 4.5e-38 gi|157887779|emb|CAN52354.1| glutamate receptor in (1083) 700 164.5 4.5e-38 gi|124221910|dbj|BAF45467.1| glutamate receptor in (1083) 700 164.5 4.5e-38 gi|133711848|gb|ABO36653.1| glutamate receptor int (1083) 694 163.2 1.1e-37 gi|189535515|ref|XP_001922281.1| PREDICTED: simila (1122) 664 156.5 1.2e-35 gi|148725729|emb|CAN88506.1| novel glutamate recep ( 375) 654 153.8 2.5e-35 gi|47211334|emb|CAF94896.1| unnamed protein produc (1178) 625 147.8 5.1e-33 gi|47939783|gb|AAH72227.1| LOC432193 protein [Xeno ( 702) 605 143.2 7.7e-32 gi|148666893|gb|EDK99309.1| mCG130431, isoform CRA ( 679) 596 141.1 3e-31 gi|119617575|gb|EAW97169.1| hCG1774522, isoform CR (1069) 596 141.3 4.2e-31 gi|114643914|ref|XP_001161946.1| PREDICTED: glutam (1106) 594 140.9 5.8e-31 gi|55251092|emb|CAH69104.1| novel protein similar (1143) 594 140.9 6e-31 gi|148692448|gb|EDL24395.1| glutamate receptor int (1127) 592 140.4 8.1e-31 gi|114643912|ref|XP_001162024.1| PREDICTED: glutam (1009) 591 140.2 8.7e-31 gi|109097690|ref|XP_001117121.1| PREDICTED: glutam (1009) 591 140.2 8.7e-31 gi|45709824|gb|AAH67398.1| Grip1 protein [Mus musc (1060) 591 140.2 9e-31 gi|114643908|ref|XP_001162058.1| PREDICTED: glutam (1061) 591 140.2 9e-31 gi|109097686|ref|XP_001117116.1| PREDICTED: glutam (1061) 591 140.2 9e-31 gi|114643906|ref|XP_001161618.1| PREDICTED: glutam (1076) 591 140.2 9.1e-31 gi|92096237|gb|AAI15394.1| Glutamate receptor inte (1076) 591 140.2 9.1e-31 gi|78523088|gb|ABB46289.1| glutamate receptor inte (1112) 591 140.2 9.3e-31 gi|46397435|sp|P97879.1|GRIP1_RAT RecName: Full=Gl (1112) 591 140.2 9.3e-31 gi|149066844|gb|EDM16577.1| glutamate receptor int (1112) 591 140.2 9.3e-31 gi|114643904|ref|XP_001162097.1| PREDICTED: glutam (1113) 591 140.2 9.3e-31 gi|49116114|gb|AAH72632.1| Grip1 protein [Mus musc (1113) 591 140.2 9.3e-31 gi|46397459|sp|Q925T6.1|GRIP1_MOUSE RecName: Full= (1127) 591 140.2 9.4e-31 gi|149066843|gb|EDM16576.1| glutamate receptor int (1127) 591 140.2 9.4e-31 gi|114643902|ref|XP_509203.2| PREDICTED: glutamate (1128) 591 140.2 9.4e-31 gi|48474711|sp|Q9Y3R0.2|GRIP1_HUMAN RecName: Full= (1128) 591 140.2 9.4e-31 gi|109097684|ref|XP_001117109.1| PREDICTED: glutam (1128) 591 140.2 9.4e-31 >>gi|18676638|dbj|BAB84971.1| FLJ00218 protein [Homo sap (174 aa) initn: 1228 init1: 1228 opt: 1228 Z-score: 1485.8 bits: 281.4 E(): 4.7e-74 Smith-Waterman score: 1228; 100.000% identity (100.000% similar) in 174 aa overlap (1-174:1-174) 10 20 30 40 50 60 FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG 10 20 30 40 50 60 70 80 90 100 110 120 FLJ002 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL 70 80 90 100 110 120 130 140 150 160 170 FLJ002 KNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGGRDHARWSG :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|186 KNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGGRDHARWSG 130 140 150 160 170 >>gi|119584603|gb|EAW64199.1| hCG27236, isoform CRA_c [H (392 aa) initn: 796 init1: 796 opt: 796 Z-score: 961.1 bits: 185.5 E(): 7.8e-45 Smith-Waterman score: 796; 100.000% identity (100.000% similar) in 122 aa overlap (17-138:13-134) 10 20 30 40 50 60 FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG :::::::::::::::::::::::::::::::::::::::::::: gi|119 MLCGLSRETPGEADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG 10 20 30 40 50 70 80 90 100 110 120 FLJ002 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL 60 70 80 90 100 110 130 140 150 160 170 FLJ002 KNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGGRDHARWSG :::::::::::::::::: gi|119 KNVGERVVLEVEYELPPPAPENNPRIISKTVDVSLYKEGNSFGFVLRGGAHEDGHKSRPL 120 130 140 150 160 170 >>gi|119584605|gb|EAW64201.1| hCG27236, isoform CRA_e [H (873 aa) initn: 796 init1: 796 opt: 796 Z-score: 956.5 bits: 185.8 E(): 1.4e-44 Smith-Waterman score: 796; 100.000% identity (100.000% similar) in 122 aa overlap (17-138:13-134) 10 20 30 40 50 60 FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG :::::::::::::::::::::::::::::::::::::::::::: gi|119 MLCGLSRETPGEADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG 10 20 30 40 50 70 80 90 100 110 120 FLJ002 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL 60 70 80 90 100 110 130 140 150 160 170 FLJ002 KNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGGRDHARWSG :::::::::::::::::: gi|119 KNVGERVVLEVEYELPPPAPENNPRIISKTVDVSLYKEGNSFGFVLRGGAHEDGHKSRPL 120 130 140 150 160 170 >>gi|119584602|gb|EAW64198.1| hCG27236, isoform CRA_b [H (1043 aa) initn: 796 init1: 796 opt: 796 Z-score: 955.5 bits: 185.9 E(): 1.6e-44 Smith-Waterman score: 796; 100.000% identity (100.000% similar) in 122 aa overlap (17-138:13-134) 10 20 30 40 50 60 FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG :::::::::::::::::::::::::::::::::::::::::::: gi|119 MLCGLSRETPGEADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG 10 20 30 40 50 70 80 90 100 110 120 FLJ002 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL 60 70 80 90 100 110 130 140 150 160 170 FLJ002 KNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGGRDHARWSG :::::::::::::::::: gi|119 KNVGERVVLEVEYELPPPAPENNPRIISKTVDVSLYKEGNSFGFVLRGGAHEDGHKSRPL 120 130 140 150 160 170 >>gi|48474948|sp|Q9C0E4.3|GRIP2_HUMAN RecName: Full=Glut (1043 aa) initn: 796 init1: 796 opt: 796 Z-score: 955.5 bits: 185.9 E(): 1.6e-44 Smith-Waterman score: 796; 100.000% identity (100.000% similar) in 122 aa overlap (17-138:13-134) 10 20 30 40 50 60 FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG :::::::::::::::::::::::::::::::::::::::::::: gi|484 MLCGLSRETPGEADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG 10 20 30 40 50 70 80 90 100 110 120 FLJ002 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|484 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL 60 70 80 90 100 110 130 140 150 160 170 FLJ002 KNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGGRDHARWSG :::::::::::::::::: gi|484 KNVGERVVLEVEYELPPPAPENNPRIISKTVDVSLYKEGNSFGFVLRGGAHEDGHKSRPL 120 130 140 150 160 170 >>gi|122937249|ref|NP_001073892.1| glutamate receptor in (1141 aa) initn: 796 init1: 796 opt: 796 Z-score: 955.0 bits: 185.9 E(): 1.7e-44 Smith-Waterman score: 796; 100.000% identity (100.000% similar) in 122 aa overlap (17-138:110-231) 10 20 30 40 FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEE :::::::::::::::::::::::::::::: gi|122 KQRGSRGSWWAAGETIANMLCGLSRETPGEADDGPYSKGGKDAGGADVSLACRRQSIPEE 80 90 100 110 120 130 50 60 70 80 90 100 FLJ002 FRGITVVELIKKEGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 FRGITVVELIKKEGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGI 140 150 160 170 180 190 110 120 130 140 150 160 FLJ002 HLTRLRHDEIITLLKNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGG :::::::::::::::::::::::::::::::: gi|122 HLTRLRHDEIITLLKNVGERVVLEVEYELPPPAPENNPRIISKTVDVSLYKEGNSFGFVL 200 210 220 230 240 250 170 FLJ002 RDHARWSG gi|122 RGGAHEDGHKSRPLVLTYVRPGGPADREGSLKVGDRLLSVDGIPLHGASHATALATLRQC 260 270 280 290 300 310 >>gi|109098018|ref|XP_001090379.1| PREDICTED: glutamate (1196 aa) initn: 795 init1: 795 opt: 795 Z-score: 953.5 bits: 185.7 E(): 2.1e-44 Smith-Waterman score: 795; 99.180% identity (100.000% similar) in 122 aa overlap (17-138:166-287) 10 20 30 40 FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEE :::::::::::::::::::::::::::::: gi|109 EQRGSRGSWWAAGETIANMLCGLSRETPGEADDGPYSKGGKDAGGADVSLACRRQSIPEE 140 150 160 170 180 190 50 60 70 80 90 100 FLJ002 FRGITVVELIKKEGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGI :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|109 FRGITVVELIKKEGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNVGDYIRSVNGI 200 210 220 230 240 250 110 120 130 140 150 160 FLJ002 HLTRLRHDEIITLLKNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGG :::::::::::::::::::::::::::::::: gi|109 HLTRLRHDEIITLLKNVGERVVLEVEYELPPPAPENNPRIISKTVDVSLYKEGNSFGFVL 260 270 280 290 300 310 170 FLJ002 RDHARWSG gi|109 RGGAHEDGHKSRPLVLTYVRPGGPADREGSLKVGDRLLSVDGIPLHGASHATALATLRQC 320 330 340 350 360 370 >>gi|194221051|ref|XP_001914958.1| PREDICTED: glutamate (1085 aa) initn: 817 init1: 781 opt: 781 Z-score: 937.2 bits: 182.5 E(): 1.7e-43 Smith-Waterman score: 781; 95.902% identity (100.000% similar) in 122 aa overlap (17-138:104-225) 10 20 30 40 FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEE ::::::::::::.:::::..:::::::::: gi|194 AKQRGSRGSQWAGETIADMLCGLSRETPGEADDGPYSKGGKDTGGADVAVACRRQSIPEE 80 90 100 110 120 130 50 60 70 80 90 100 FLJ002 FRGITVVELIKKEGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGI :::.:::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|194 FRGVTVVELIKKEGSTLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNVGDYIRSVNGI 140 150 160 170 180 190 110 120 130 140 150 160 FLJ002 HLTRLRHDEIITLLKNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGG :::::::::::::::::::::::::::::::: gi|194 HLTRLRHDEIITLLKNVGERVVLEVEYELPPPAPENNPGIVSKTVDVSLYKEGNSFGFVL 200 210 220 230 240 250 170 FLJ002 RDHARWSG gi|194 RGGAHEDGHKSRPLVLTYVRPGGPADREGSLKVGDRLLGVDGIPLHGASHAAALATLRQC 260 270 280 290 300 310 >>gi|73984538|ref|XP_858433.1| PREDICTED: similar to Glu (1001 aa) initn: 796 init1: 773 opt: 773 Z-score: 928.1 bits: 180.7 E(): 5.4e-43 Smith-Waterman score: 773; 95.082% identity (99.180% similar) in 122 aa overlap (17-138:13-134) 10 20 30 40 50 60 FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG :::::::::::::::.::.::::::::::::::.:.::: :::: gi|739 MLCGLSRETPGEADDGPYSKGGKDAGGTDVALACRRQSIPEEFRGVTMVELNKKEG 10 20 30 40 50 70 80 90 100 110 120 FLJ002 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|739 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNVGDYIRSVNGIHLTRLRHDEIITLL 60 70 80 90 100 110 130 140 150 160 170 FLJ002 KNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGGRDHARWSG :::::::::::::::::: gi|739 KNVGERVVLEVEYELPPPAPENNPGIITKTVDVSLYKEGNSFGFVLRGGAHEDIHKTRPL 120 130 140 150 160 170 >>gi|73984540|ref|XP_541752.2| PREDICTED: similar to Glu (1043 aa) initn: 796 init1: 773 opt: 773 Z-score: 927.8 bits: 180.7 E(): 5.6e-43 Smith-Waterman score: 773; 95.082% identity (99.180% similar) in 122 aa overlap (17-138:13-134) 10 20 30 40 50 60 FLJ002 QEWKRKWNSAFPSFSPADDGPYSKGGKDAGGADVSLACRRQSIPEEFRGITVVELIKKEG :::::::::::::::.::.::::::::::::::.:.::: :::: gi|739 MLCGLSRETPGEADDGPYSKGGKDAGGTDVALACRRQSIPEEFRGVTMVELNKKEG 10 20 30 40 50 70 80 90 100 110 120 FLJ002 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNIGDYIRSVNGIHLTRLRHDEIITLL :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|739 STLGLTISGGTDKDGKPRVSNLRPGGLAARSDLLNVGDYIRSVNGIHLTRLRHDEIITLL 60 70 80 90 100 110 130 140 150 160 170 FLJ002 KNVGERVVLEVEYELPPPGGCPWTGNFLHCLGCGWTRLPPHQGLGGRDHARWSG :::::::::::::::::: gi|739 KNVGERVVLEVEYELPPPAPENNPGIITKTVDVSLYKEGNSFGFVLRGGAHEDIHKTRPL 120 130 140 150 160 170 174 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 21:32:28 2009 done: Fri Feb 27 21:36:52 2009 Total Scan time: 631.940 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]