# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj05764.fasta.huge -Q ../query/FLJ00219.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00219, 168 aa vs ./tmplib.10216 library 2210826 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.7143+/-0.00447; mu= 14.6273+/- 0.302 mean_var=105.8196+/-23.497, 0's: 0 Z-trim: 1 B-trim: 59 in 1/39 Lambda= 0.124678 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00056 ( 1310 res) as00056 (1310) 108 29.3 0.82 KIAA1908 ( 445 res) ah02604 ( 445) 94 26.1 2.5 KIAA1690 ( 482 res) fh27434 ( 482) 94 26.2 2.6 KIAA0374 ( 584 res) hh00327 ( 584) 92 25.9 3.8 KIAA0897 ( 419 res) hk09524 ( 419) 90 25.4 4 KIAA1447 ( 1721 res) fh04686 (1721) 95 27.1 4.9 KIAA1607 ( 1270 res) fj11118 (1270) 92 26.4 6 KIAA0794 ( 490 res) hk06006 ( 490) 86 24.7 7.2 FLJ00156 ( 1887 res) sh06477 (1887) 92 26.6 7.5 KIAA1056 ( 870 res) hh11792 ( 870) 87 25.3 8.9 KIAA0257 ( 1805 res) ha07065 (1805) 90 26.2 9.4 KIAA1951 ( 679 res) fj05532 ( 679) 85 24.8 9.9 KIAA0505 ( 200 res) hh00043 ( 200) 79 23.0 10 FLJ00402 ( 137 res) sj07511 ( 137) 77 22.4 10 KIAA1860 ( 689 res) fh18358 ( 689) 83 24.4 13 KIAA0746 ( 1029 res) hk04140 (1029) 84 24.8 14 KIAA0731 ( 1096 res) hk03714 (1096) 84 24.9 15 KIAA1124 ( 1760 res) fg05708 (1760) 86 25.5 15 KIAA1547 ( 863 res) fh14154 ( 863) 82 24.4 16 KIAA0924 ( 617 res) hh02883 ( 617) 80 23.8 17 KIAA1799 ( 610 res) fj20761 ( 610) 79 23.6 20 KIAA0160 ( 803 res) ha03912s1 ( 803) 80 24.0 20 KIAA0411 ( 1061 res) hg02120 (1061) 81 24.3 21 FLJ00153 ( 497 res) sh06127 ( 497) 77 23.1 22 KIAA0608 ( 775 res) hh00889b ( 775) 79 23.8 23 KIAA0439 ( 995 res) hj00462 ( 995) 80 24.1 23 KIAA1029 ( 1015 res) fh00363 (1015) 80 24.1 23 KIAA0054 ( 1943 res) ha00503s1 (1943) 83 25.0 23 KIAA0593 ( 2005 res) hj02824s1 (2005) 83 25.0 24 KIAA0853 ( 967 res) hk06136 ( 967) 79 23.9 26 KIAA1614 ( 1208 res) fj12973 (1208) 80 24.2 26 FLJ00345 ( 339 res) sf00014 ( 339) 74 22.4 26 FLJ00059 ( 477 res) as00059 ( 477) 75 22.8 28 FLJ00379 ( 487 res) sj00523 ( 487) 75 22.8 28 FLJ00009 ( 540 res) as00009 ( 540) 75 22.8 30 KIAA1856 ( 1134 res) fh03203 (1134) 78 23.8 32 KIAA2032 ( 952 res) eh00720 ( 952) 77 23.5 32 KIAA0522 ( 1555 res) hg01393 (1555) 79 24.2 34 FLJ00100 ( 672 res) as00100 ( 672) 75 23.0 34 KIAA0802 ( 1578 res) hh07536 (1578) 79 24.2 34 KIAA1770 ( 1307 res) pj01645(revised) (1307) 78 23.9 34 KIAA0405 ( 706 res) hg01274 ( 706) 75 23.0 35 KIAA0381 ( 1114 res) ah04695 (1114) 77 23.6 35 KIAA1582 ( 1740 res) fj05982s1 (1740) 79 24.2 36 FLJ00010 ( 772 res) as00010 ( 772) 75 23.0 37 KIAA1442 ( 627 res) hh10127b ( 627) 74 22.7 37 KIAA1076 ( 804 res) hj06779 ( 804) 75 23.1 38 FLJ00369 ( 700 res) sh06511 ( 700) 74 22.8 39 KIAA1111 ( 1084 res) hj04651s1 (1084) 76 23.4 40 KIAA0980 ( 1406 res) hj07083 (1406) 77 23.8 41 >>FLJ00056 ( 1310 res) as00056 (1310 aa) initn: 103 init1: 55 opt: 108 Z-score: 107.9 bits: 29.3 E(): 0.82 Smith-Waterman score: 108; 31.633% identity (51.020% similar) in 98 aa overlap (76-165:713-803) 50 60 70 80 90 100 FLJ002 TRTKFTQDNLCHAQRERLDSANLWVLVDCILRDTSEDLGLQCDAVNLAFGR---RCEELE .: . ::: :. .:: ::.::: FLJ000 LAGAGPGREAVLAALALRRAPEPSAGTFQEMRALALDLG--SPAALREWGRCQARCQELE 690 700 710 720 730 740 110 120 130 140 150 FLJ002 DARHKLQHHLHKVGHPEPRRRLRRLPTTLPPLITWPGPSTPFSSVP--LIPRDPRSK--- ...:.:: . . :. :: :: . : :: .: :. :.: .: . FLJ000 ---RRIQQHLGEEASPRGYRR-RRADGASSGGAQW-GPRSPSPSLSSLLLPSSPGPRPAP 750 760 770 780 790 160 FLJ002 CHLSVNLCKTR : :. : FLJ000 SHCSLAPCGEDYEEEGPELAPEAEGRPPRAVLIRGLEVTSTEVVDRTCSPREHVLLGRAR 800 810 820 830 840 850 >>KIAA1908 ( 445 res) ah02604 (445 aa) initn: 83 init1: 52 opt: 94 Z-score: 99.2 bits: 26.1 E(): 2.5 Smith-Waterman score: 103; 23.171% identity (46.951% similar) in 164 aa overlap (18-167:154-297) 10 20 30 40 FLJ002 TGQGGVRSAPGTGRIAFPPKASRGSTNTAHLSMANSWPRSASTPETR ::. :: ... .::. .:.. ..: KIAA19 WSPVLLAWGGVWSGEAHPCAHVLRPPASPCPPRPRRGCGDSGSSGMAQR--AQAGSNQSR 130 140 150 160 170 180 50 60 70 80 90 FLJ002 TKFTQDNLCHAQR--------ERLDSANL------WVLVDCILRDTSEDLGLQCDAVNLA : .:. : . ::..::. :.: . . . . . KIAA19 GKCGRDGRCPPRSSPGAPEAAERVESAETRGPGKSWILSPSSMSEPRRGKARRSP----- 190 200 210 220 230 100 110 120 130 140 150 FLJ002 FGRRCEELEDARHKLQHHLHKVGHPEPRRRLRRLPTTLPPLITWPGPSTPFSSVPLIPRD ::: :: . . . : :: . .: . . :: .: .. :. :. KIAA19 -GRR-------RHPHSSFPQASSPSSPSRR-ETIPQVQSSGV--PGAMSPEQT--LFSRS 240 250 260 270 280 160 FLJ002 PRSKCHLSVNLCKTR ::. ::. .::.: KIAA19 PRGLSHLGQSLCRTVKESEAQRGKTMPPGSHSPSGAGQGRTARKGPAREEIPSSDSSAKP 290 300 310 320 330 340 >>KIAA1690 ( 482 res) fh27434 (482 aa) initn: 89 init1: 64 opt: 94 Z-score: 98.8 bits: 26.2 E(): 2.6 Smith-Waterman score: 94; 35.714% identity (61.905% similar) in 42 aa overlap (115-154:23-64) 90 100 110 120 130 140 FLJ002 LQCDAVNLAFGRRCEELEDARHKLQHHLHKVGHPEPRRRLRRLPTTLPP--LITWPGPST . .: ::. :. ::. :: ..: : :: KIAA16 ALYCQLLSFLLILALTEALAFAIQEPSPRESLQVLPSGTPPGTMVTAPHSST 10 20 30 40 50 150 160 FLJ002 PFSSVPLIPRDPRSKCHLSVNLCKTR .:: .. .: KIAA16 RHTSVVMLTPNPDGPPSQAAAPMATLTPRAEGHPPTHTISTIAATVTAPHSESSLSTGPA 60 70 80 90 100 110 >>KIAA0374 ( 584 res) hh00327 (584 aa) initn: 76 init1: 51 opt: 92 Z-score: 96.0 bits: 25.9 E(): 3.8 Smith-Waterman score: 93; 35.000% identity (58.333% similar) in 60 aa overlap (122-168:40-99) 100 110 120 130 140 FLJ002 LAFGRRCEELEDARHKLQHHLHKVGHPEPRRRLRR--LPTTLPPL-ITWPGP-------S ::.:: .: . : .::::: . KIAA03 WVVGTCAPALFNSLVEAAVVCQALAPGVSCRRVRREAMPGSGPSERMTWPGPALSAGPPT 10 20 30 40 50 60 150 160 FLJ002 TPFSSVPLIPRDP---RSKCHLSVNLCKTR :.::.: :: : :.. ....: .: KIAA03 RPLSSAPGIPPIPPLTRTHSLMAMSLPGSRRTSAGSRRRTSPPVSVRDAYGTSSLSSSSN 70 80 90 100 110 120 >>KIAA0897 ( 419 res) hk09524 (419 aa) initn: 65 init1: 42 opt: 90 Z-score: 95.6 bits: 25.4 E(): 4 Smith-Waterman score: 90; 31.111% identity (57.778% similar) in 90 aa overlap (30-115:179-263) 10 20 30 40 50 FLJ002 TGQGGVRSAPGTGRIAFPPKASRGSTNTAHLSMANSWPRSASTPETRTKFTQDNLCHAQ : ..: : : . :. :. : .. : :. KIAA08 HEEMETLETSTKTDSEEGSWAQTLAYGDMNHEWIGNEWLPSLGLPQYRSYF-MECLVDAR 150 160 170 180 190 200 60 70 80 90 100 110 FLJ002 R-ERLDSANLWV---LVDCILRDTSEDLGLQCDAVNLAFGRRCEELEDARHKLQHHLHKV ..: . .: : .:: . : :: . :..: : . :. ::: :.. ::... : KIAA08 MLDHLTKKDLRVHLKMVDSFHR-TSLQYGIMC-LKRLNYDRK--ELEKRREESQHEIKDV 210 220 230 240 250 260 120 130 140 150 160 FLJ002 GHPEPRRRLRRLPTTLPPLITWPGPSTPFSSVPLIPRDPRSKCHLSVNLCKTR KIAA08 LVWTNDQVVHWVQSIGLRDYAGNLHESGVHGALLALDENFDHNTLALILQIPTQNTQARQ 270 280 290 300 310 320 >>KIAA1447 ( 1721 res) fh04686 (1721 aa) initn: 70 init1: 70 opt: 95 Z-score: 94.0 bits: 27.1 E(): 4.9 Smith-Waterman score: 95; 44.737% identity (52.632% similar) in 38 aa overlap (128-165:243-277) 100 110 120 130 140 150 FLJ002 CEELEDARHKLQHHLHKVGHPEPRRRLRRLPTTLPPLITWPGPSTPFSSVPLIPRDPRSK :: ::: : :. : :: : : : . KIAA14 EPAQEKAPKSTHKPVALTPTAPGAPSPAAGPTKLPPCCHPPDPKPPASS-PTPPPRPSAP 220 230 240 250 260 270 160 FLJ002 CHLSVNLCKTR : : :.: KIAA14 CTL--NVCPASSPGPGSRVRSAEEKNGEGQQSTADIITSEPVARAHSVAHAGLEFLASND 280 290 300 310 320 >>KIAA1607 ( 1270 res) fj11118 (1270 aa) initn: 58 init1: 36 opt: 92 Z-score: 92.5 bits: 26.4 E(): 6 Smith-Waterman score: 92; 22.481% identity (43.411% similar) in 129 aa overlap (6-134:614-737) 10 20 30 FLJ002 TGQGGVRSAPGTGRIAFPPKASRGSTNTAHLSMAN .: ::. :: . .: .: .: . : KIAA16 YNNDRSKAFKSFCSFQPSLKGKATSEDTLNLRRYPGSDRIMLQKWQKRDISNFEYLMYLN 590 600 610 620 630 640 40 50 60 70 80 90 FLJ002 SWPRSASTPETRTKFTQDNLCHAQRERLDSANLWVLVDCILRDTSEDLGLQCDAVNLAFG . . . . : : :. :: :.:: :. .: : .: : KIAA16 TAAGRTCNDYMQYPVFPWVLADYTSETLNLAN-----PKIFRDLSKPMGAQTKERKLKFI 650 660 670 680 690 100 110 120 130 140 150 FLJ002 RRCEELEDARHKLQHHLHKVGHPEPRRRLRRLPTTLPPLITWPGPSTPFSSVPLIPRDPR .: .:.: .. . . : : . . .::. KIAA16 QRFKEVEKTEGDMTVQCHYYTHYSSAIIVASYLVRMPPFTQAFCALQGGSFDVADRMFHS 700 710 720 730 740 750 160 FLJ002 SKCHLSVNLCKTR KIAA16 VKSTWESASRENMSDVRELTPEFFYLPEFLTNCNGVEFGCMQDGTVLGDVQLPPWADGDP 760 770 780 790 800 810 >>KIAA0794 ( 490 res) hk06006 (490 aa) initn: 50 init1: 50 opt: 86 Z-score: 91.0 bits: 24.7 E(): 7.2 Smith-Waterman score: 86; 22.400% identity (56.000% similar) in 125 aa overlap (33-150:268-388) 10 20 30 40 50 FLJ002 QGGVRSAPGTGRIAFPPKASRGSTNTAHLSMANSWPRSASTPETRTKFTQDNLCHA---- ...: :.. . :. ..:. .: KIAA07 QKLVEWHQLDVSSFLDQVTGFLGEHGQLDGLSSSPPKKCARSESLIDASEDSQLEAAIRA 240 250 260 270 280 290 60 70 80 90 100 110 FLJ002 --QRERLDSANLWVLVDCILRDTSEDLGLQCDAVNLAFGRRCEELED-ARHKLQHHLHKV :. ..::.. .. :: .. . . ... . . ::.:. :. . . : . . KIAA07 SLQETHFDSTQTKQDSRSDEESESELFSGSEEFISVCGSDEEEEVENLAKSRKSPH-KDL 300 310 320 330 340 350 120 130 140 150 160 FLJ002 GHPEPRRRLRRLPTTLPPLITWPGPSTPFSSVPLIPRDPRSKCHLSVNLCKTR :: :.. : : : ::. : :: .: ...: . KIAA07 GH---RKEENRRPLTEPPVRTDPGTATNHQGLPAVDSEILEMPPEKADGVVEGIDVNGPK 360 370 380 390 400 410 KIAA07 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSKGYPNERFELLTNFPRRKLSHLDYDITL 420 430 440 450 460 470 >>FLJ00156 ( 1887 res) sh06477 (1887 aa) initn: 58 init1: 36 opt: 92 Z-score: 90.6 bits: 26.6 E(): 7.5 Smith-Waterman score: 92; 22.481% identity (43.411% similar) in 129 aa overlap (6-134:1239-1362) 10 20 30 FLJ002 TGQGGVRSAPGTGRIAFPPKASRGSTNTAHLSMAN .: ::. :: . .: .: .: . : FLJ001 YNNDRSKAFKSFCSFQPSLKGKATSEDTLNLRRYPGSDRIMLQKWQKRDISNFEYLMYLN 1210 1220 1230 1240 1250 1260 40 50 60 70 80 90 FLJ002 SWPRSASTPETRTKFTQDNLCHAQRERLDSANLWVLVDCILRDTSEDLGLQCDAVNLAFG . . . . : : :. :: :.:: :. .: : .: : FLJ001 TAAGRTCNDYMQYPVFPWVLADYTSETLNLAN-----PKIFRDLSKPMGAQTKERKLKFI 1270 1280 1290 1300 1310 1320 100 110 120 130 140 150 FLJ002 RRCEELEDARHKLQHHLHKVGHPEPRRRLRRLPTTLPPLITWPGPSTPFSSVPLIPRDPR .: .:.: .. . . : : . . .::. FLJ001 QRFKEVEKTEGDMTVQCHYYTHYSSAIIVASYLVRMPPFTQAFCALQGGSFDVADRMFHS 1330 1340 1350 1360 1370 1380 160 FLJ002 SKCHLSVNLCKTR FLJ001 VKSTWESASRENMSDVRELTPEFFYLPEFLTNCNGVEFGCMQDGTVLGDVQLPPWADGDP 1390 1400 1410 1420 1430 1440 >>KIAA1056 ( 870 res) hh11792 (870 aa) initn: 105 init1: 80 opt: 87 Z-score: 89.3 bits: 25.3 E(): 8.9 Smith-Waterman score: 87; 29.091% identity (52.727% similar) in 55 aa overlap (98-151:582-636) 70 80 90 100 110 120 FLJ002 LWVLVDCILRDTSEDLGLQCDAVNLAFGRRCEELEDARHKLQHHLHKVGHPEPRRRLRR- : . ..:. :. . : . :.. KIAA10 GGQGSPTEASLPPSAGDKEPKTKSSWQCKVCSYETNISRNLRIHMTSEKHMQNVLMLHQG 560 570 580 590 600 610 130 140 150 160 FLJ002 LPTTLPPLITWPGPSTPFSSVPLIPRDPRSKCHLSVNLCKTR :: ::: . ::: : ...: : KIAA10 LPLGLPPGLMGPGPPPPPGATPTSPPELFQYFGPQALGQPQTPLAGPGLRPDKPLEAQLL 620 630 640 650 660 670 168 residues in 1 query sequences 2210826 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:44:48 2009 done: Fri Feb 27 10:44:49 2009 Total Scan time: 0.340 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]