# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj05826.fasta.huge -Q ../query/FLJ00336.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00336, 333 aa vs ./tmplib.10216 library 2210661 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.5362+/-0.00343; mu= 20.8350+/- 0.232 mean_var=70.7177+/-15.625, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.152514 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1507 ( 872 res) hk04967 ( 872) 88 28.5 1.9 KIAA0664 ( 1134 res) hk02041 (1134) 83 27.6 4.7 KIAA2014 ( 1032 res) ff00951s1 (1032) 82 27.3 5.2 KIAA0404 ( 1956 res) hg01236 (1956) 84 28.1 5.4 FLJ00136 ( 811 res) sh02543 ( 811) 80 26.7 6.2 KIAA0873 ( 466 res) hk07246 ( 466) 78 25.9 6.2 KIAA0196 ( 1164 res) ha02952 (1164) 81 27.1 6.4 KIAA1522 ( 1044 res) fh14706(revised) (1044) 80 26.8 7.1 KIAA1178 ( 124 res) hh01688a ( 124) 72 23.7 7.6 KIAA0029 ( 974 res) ha00566 ( 974) 78 26.4 9.2 KIAA0214 ( 790 res) ha04778 ( 790) 77 26.0 9.6 KIAA1232 ( 520 res) fh08445 ( 520) 75 25.3 10 KIAA1400 ( 1093 res) hk08136 (1093) 76 26.0 13 KIAA0667 ( 1111 res) hk02319 (1111) 76 26.0 13 KIAA1000 ( 1956 res) hk09604y2 (1956) 77 26.6 16 KIAA0184 ( 863 res) ha02918 ( 863) 74 25.4 16 KIAA0075 ( 174 res) ha01209 ( 174) 68 23.0 17 KIAA0935 ( 952 res) af13188 ( 952) 74 25.5 17 KIAA0183 ( 1111 res) ha02726 (1111) 74 25.6 18 KIAA0325 ( 4658 res) hg00575y2 (4658) 77 27.2 25 KIAA1306 ( 1154 res) fh05845 (1154) 72 25.2 25 KIAA0913 ( 1881 res) fh07519s2 (1881) 73 25.7 28 KIAA1051 ( 402 res) hh04271 ( 402) 67 23.4 30 KIAA1472 ( 601 res) fj03211 ( 601) 68 23.8 32 KIAA0744 ( 619 res) hk04110 ( 619) 68 23.9 33 FLJ00174 ( 628 res) sj00729 ( 628) 68 23.9 33 KIAA1832 ( 694 res) fg02852(revised) ( 694) 68 23.9 35 KIAA0178 ( 1233 res) ha02501s1 (1233) 70 24.8 35 KIAA0131 ( 942 res) ha01235 ( 942) 69 24.4 36 KIAA0347 ( 1281 res) hg01528(revised) (1281) 70 24.8 36 KIAA0090 ( 991 res) eh00576 ( 991) 69 24.4 36 KIAA1694 ( 757 res) fj11293 ( 757) 68 24.0 37 KIAA0992 ( 772 res) hk07554 ( 772) 68 24.0 37 KIAA1906 ( 593 res) ah00281 ( 593) 67 23.6 38 KIAA1663 ( 347 res) hk01115 ( 347) 65 22.8 38 KIAA0447 ( 466 res) fh17910 ( 466) 66 23.2 38 KIAA0267 ( 666 res) ha07045 ( 666) 67 23.7 40 FLJ00341 ( 2760 res) sf00005 (2760) 72 25.7 40 KIAA0559 ( 1212 res) hh01510 (1212) 69 24.5 41 FLJ00036 ( 706 res) as00036 ( 706) 67 23.7 41 KIAA0614 ( 3006 res) hg01176s2 (3006) 72 25.8 42 KIAA0837 ( 745 res) hj06536 ( 745) 67 23.8 42 KIAA0819 ( 989 res) hh01037 ( 989) 68 24.2 42 KIAA1666 ( 1003 res) fg02554 (1003) 68 24.2 43 KIAA0502 ( 144 res) hh00007 ( 144) 61 21.4 44 KIAA0315 ( 1841 res) hg00246 (1841) 70 25.0 44 KIAA0356 ( 1058 res) hh00006s1 (1058) 68 24.2 44 KIAA1214 ( 462 res) fh01431 ( 462) 65 23.0 44 KIAA0755 ( 1093 res) hk04532 (1093) 68 24.2 45 KIAA1981 ( 862 res) fk03148(revised) ( 862) 67 23.9 46 >>KIAA1507 ( 872 res) hk04967 (872 aa) initn: 78 init1: 49 opt: 88 Z-score: 101.4 bits: 28.5 E(): 1.9 Smith-Waterman score: 100; 24.913% identity (47.751% similar) in 289 aa overlap (57-314:547-815) 30 40 50 60 70 80 FLJ003 ICRYLLKQPVREAERRHRVRLAVGNGLRPAIWEEF--TERFGVRQIGEFYGATECNCSIA .: : .:.: .:..:.:: : : . KIAA15 RVAQPRLRQPPETLLTLRPKHGGTTDVGEPLWPEPLGVEHF-LREVGQFYEAESCLVEAG 520 530 540 550 560 570 90 100 110 120 FLJ003 NMD-GK---VGSCGFNSRILPHVYPIRLVKVNEDTME------LLRDAQ-------GLCI . :. . :. :..: :..:. . .: ::.. . : . KIAA15 RLPAGQRRFAHFPGLASELLLTGLPLELIDGSTLSMPVRWVTGLLKELHVRLERRSRLVV 580 590 600 610 620 630 130 140 150 160 170 180 FLJ003 PCQAGEPGLLVGQINQQDPLR--RFDGYVSESATSKKIAHSVFSKGDSAYLSGD-VLVMD .: :: .:. . . . :: : . . . . ..: : :. : .::.: KIAA15 LSTVGVPG--TGKSTLLNTMFGLRFATGKSCGPRGAFMQLITVAEGFSQDLGCDHILVID 640 650 660 670 680 690 190 200 210 220 230 240 FLJ003 ELGYMYFRDRS-GDTFRWRGENVSTTEVEGVLSRLL-GQTDVAVYGVAVPGVEGKAGMAA : . : :: : :.:. :. :: : ..:.: ..: : : :: KIAA15 SGGLIGGALTSAGDRF----------ELEASLATLLMGLSNVTVISLA----ETKDIPAA 700 710 720 730 250 260 270 280 290 FLJ003 VADPHSLLD-----PNA--IYQELQKVLAPYARPIFLRLLPQVDTTGTFKIQKTRLQREG . :. :: .::.:. : .: :: : : .: : .. ......: KIAA15 ILHAFLRLEKTGHMPNYQFVYQNLHDVSVPGPRPRDKRQL--LDPPGDLSRAAAQMEKQG 740 750 760 770 780 790 300 310 320 330 FLJ003 FDPRQTSDRLFFLDLKQGHYLPLNEAVYTRICSGAFAL : .. : : : .. : KIAA15 -DGFRALAGLAFCDPEKQHIWHIPGLWHGAPPMAAVSLAYSEAIFELKRCLLENIRNGLS 800 810 820 830 840 850 >>KIAA0664 ( 1134 res) hk02041 (1134 aa) initn: 52 init1: 52 opt: 83 Z-score: 94.3 bits: 27.6 E(): 4.7 Smith-Waterman score: 83; 30.357% identity (64.286% similar) in 56 aa overlap (88-137:531-584) 60 70 80 90 100 110 FLJ003 WEEFTERFGVRQIGEFYGATECNCSIANMDGKVGSCGFNSRILPHVY-P-IRLVKVNEDT :...: .:. :. : .. : .:. . .: KIAA06 KVKELAETIAADDGTDPRSREVIRNACKAVGSISSTAFDIRFNPDIFSPGVRFPESCQDE 510 520 530 540 550 560 120 130 140 150 160 170 FLJ003 M----ELLRDAQGLCIPCQAGEPGLLVGQINQQDPLRRFDGYVSESATSKKIAHSVFSKG . .::.:: .. . :: :::. KIAA06 VRDQKQLLKDAAAFLLSCQI--PGLVKDCMEHAVLPVDGATLAEVMRQRGINMRYLGKVL 570 580 590 600 610 >>KIAA2014 ( 1032 res) ff00951s1 (1032 aa) initn: 95 init1: 68 opt: 82 Z-score: 93.6 bits: 27.3 E(): 5.2 Smith-Waterman score: 82; 32.727% identity (52.727% similar) in 55 aa overlap (3-55:538-586) 10 20 30 FLJ003 SGLPTACRSHHPLPHPVPQVVQYIGEICRYLL :: : ::: .:.:: .: . . KIAA20 LDLLAPAPPPEEVLPLPPPPAPPLPPPPPPLPDKCPPAPPLPGAAPSVVLTVG-LSAIRI 510 520 530 540 550 560 40 50 60 70 80 90 FLJ003 KQPVREAERRHRVRLAVGN--GLRPAIWEEFTERFGVRQIGEFYGATECNCSIANMDGKV :.:.. . :: : : .:.: KIAA20 KKPIKT-----KFRLPVFNWTALKPNQISGTVFSELDDEKILEDLDLDKFEELFKTKAQG 570 580 590 600 610 620 >>KIAA0404 ( 1956 res) hg01236 (1956 aa) initn: 117 init1: 56 opt: 84 Z-score: 93.2 bits: 28.1 E(): 5.4 Smith-Waterman score: 84; 29.787% identity (52.128% similar) in 94 aa overlap (71-160:1336-1420) 50 60 70 80 90 100 FLJ003 RRHRVRLAVGNGLRPAIWEEFTERFGVRQIGEFYGATECNCSIANMDGKVGSCGFNSRIL :: :: . ... :..:::. ... KIAA04 LDTERSLRELAQPSGGHLPQASPISVYLFPGERSGAPPPSPPVGGPAGSLGSCSEEKE-- 1310 1320 1330 1340 1350 1360 110 120 130 140 150 FLJ003 PHVYPIRLVKVNEDTME----LLRDAQGLCIPCQAGEPGLLVGQINQQDPLRRFDGYVSE : . . ::.. . :: :: :: . ::: .: :.. :. ::: :. KIAA04 ----DEREEEGDGDTLDSDEFCILDAPGLGIPPRDGEP--VVTQLHP-GPIVVRDGYFSR 1370 1380 1390 1400 1410 160 170 180 190 200 210 FLJ003 SATSKKIAHSVFSKGDSAYLSGDVLVMDELGYMYFRDRSGDTFRWRGENVSTTEVEGVLS : KIAA04 PIGSTDLLRAPAHFPVPSTRVVLREVSLVWHLYGGRDFGPHPGHRARTGLSGPRSSPSRC 1420 1430 1440 1450 1460 1470 >>FLJ00136 ( 811 res) sh02543 (811 aa) initn: 49 init1: 49 opt: 80 Z-score: 92.2 bits: 26.7 E(): 6.2 Smith-Waterman score: 80; 35.484% identity (48.387% similar) in 62 aa overlap (2-61:491-550) 10 20 30 FLJ003 SGLPTACRSHHPL-PHPVPQVVQYIGEICRY : : :: : :: : . :.. ::: FLJ001 FSEFMIQSPEAAGQEAVLLVLPLVVGLLNLGAPYLCRVLAALEPHDSPVLEVYVA-ICRN 470 480 490 500 510 40 50 60 70 80 FLJ003 L-LKQPVREAERRHRVRLAVGNGLRPAIWEEFTERFGVRQIGEFYGATECNCSIANMDGK : :: . . : . :: :. ::.: FLJ001 LILKLAILGTLCYHWLGRRVGV-LQGQCWEDFVGQELYRFLVMDFVLMLLDTLFGELVWR 520 530 540 550 560 570 90 100 110 120 130 140 FLJ003 VGSCGFNSRILPHVYPIRLVKVNEDTMELLRDAQGLCIPCQAGEPGLLVGQINQQDPLRR FLJ001 IISEKKLKRRRKPEFDIARNVLELIYGQTLTWLGVLFSPLLPAVQIIKLLLVFYVKKTSL 580 590 600 610 620 630 >>KIAA0873 ( 466 res) hk07246 (466 aa) initn: 65 init1: 40 opt: 78 Z-score: 92.1 bits: 25.9 E(): 6.2 Smith-Waterman score: 78; 27.119% identity (54.237% similar) in 118 aa overlap (200-317:4-108) 170 180 190 200 210 220 FLJ003 KGDSAYLSGDVLVMDELGYMYFRDRSGDTFRWRGENVSTTEVEGVLSRLLGQTDVAVYGV ::::.. :. :.: : .:. .. . KIAA08 RIARWRGRD-SACETEHNKSMDMGNQHPSISRL 10 20 30 230 240 250 260 270 280 FLJ003 AVPGVEGKAGMAAVADPHSLLDPNAIYQELQKVLAPYARPIFLRLLPQVDTTGTFKIQKT : :. : .: : . :..:...:. . .: . .::: : ::.. KIAA08 QEIQKEVKSVEQQVIGFSGLSDDKN-YKKLERILT---KQLFE--IDSVDTEGKGDIQQA 40 50 60 70 80 290 300 310 320 330 FLJ003 RLQREGFDPRQTSDRLFFLDLKQGHYLPLNEAVYTRICSGAFAL : .: . : ..::. .:.:. : KIAA08 R-KRAA----QETERLL-KELEQNANHPHRIEIQNIFEEAQSLVREKIVPFYNGGNCVTD 90 100 110 120 130 140 >>KIAA0196 ( 1164 res) ha02952 (1164 aa) initn: 65 init1: 65 opt: 81 Z-score: 91.9 bits: 27.1 E(): 6.4 Smith-Waterman score: 81; 40.741% identity (74.074% similar) in 27 aa overlap (9-33:809-835) 10 20 30 FLJ003 SGLPTACRSHHPLPH--PVPQVVQYIGEICRYLLKQPV .: :.:. :: . : .::..:: .:. KIAA01 VSRIINYNVEQECNNFLRTKIQDWQSMYQSTHIPIPKFTPVDESVTFIGRLCREILRITD 780 790 800 810 820 830 40 50 60 70 80 90 FLJ003 REAERRHRVRLAVGNGLRPAIWEEFTERFGVRQIGEFYGATECNCSIANMDGKVGSCGFN KIAA01 PKMTCHIDQLNTWYDMKTHQEVTSSRLFSEIQTTLGTFGLNGLDRLLCFMIVKELQNFLS 840 850 860 870 880 890 >>KIAA1522 ( 1044 res) fh14706(revised) (1044 aa) initn: 49 init1: 49 opt: 80 Z-score: 91.1 bits: 26.8 E(): 7.1 Smith-Waterman score: 80; 35.385% identity (56.923% similar) in 65 aa overlap (229-293:273-329) 200 210 220 230 240 250 FLJ003 FRWRGENVSTTEVEGVLSRLLGQTDVAVYGVAVPGVEGKAGMAAVADPHSLLDPNAIYQE .::::. : :: : .: ..:.: : KIAA15 QRHIDRVYRDDTFVGRSTGTRAPPLTRPMSLAVPGLTGGAGPAEPLSPAMSISPQATY-- 250 260 270 280 290 300 260 270 280 290 300 310 FLJ003 LQKVLAPYARPIFLRLLPQVDTTGTFKIQKTRLQREGFDPRQTSDRLFFLDLKQGHYLPL :.: : :.: : : ::... . . :.: KIAA15 LSK-LIPHAV-----LPPTVDVVALGRCSLRTLSRCSLHSASPASVRSLGRFSSVSSPQP 310 320 330 340 350 320 330 FLJ003 NEAVYTRICSGAFAL KIAA15 RSRHPSSSSDTWSHSQSSDTIVSDGSTLSSKGGSEGQPESSTASNSVVPPPQGGSGRGSP 360 370 380 390 400 410 >>KIAA1178 ( 124 res) hh01688a (124 aa) initn: 42 init1: 42 opt: 72 Z-score: 90.6 bits: 23.7 E(): 7.6 Smith-Waterman score: 72; 26.389% identity (52.778% similar) in 72 aa overlap (7-76:17-85) 10 20 30 40 FLJ003 SGLPTACRSHHPL-PHPVPQVVQYIGEICRYLLKQPVREAERRHRVRLAV :.. : : : :.. .. :. . :. :. . . . : KIAA11 YQETRERLAMRLKGLGCQTLGPHNPTPPPSLDMFAEELAEEELETPTPTQRGEAESR--- 10 20 30 40 50 50 60 70 80 90 100 FLJ003 GNGLRPAIWEEFTERFGVRQI-GEFYGATECNCSIANMDGKVGSCGFNSRILPHVYPIRL :.:: ..:: : : .. : : .: KIAA11 GDGLVDVMWEYKWENTGDAELYGPFTSAQMQTWVSEGYFPDGVYCRKLDPPGGQFYNSKR 60 70 80 90 100 110 >>KIAA0029 ( 974 res) ha00566 (974 aa) initn: 99 init1: 52 opt: 78 Z-score: 89.0 bits: 26.4 E(): 9.2 Smith-Waterman score: 78; 30.435% identity (59.420% similar) in 69 aa overlap (239-302:571-635) 210 220 230 240 250 260 FLJ003 TEVEGVLSRLLGQTDVAVYGVAVPGVEGKAGMAAVADPHS--LLD--PNAIYQELQKVLA :...: .:.: :.. ::.: ...: :. KIAA00 HYNSHLNQPLPQPAQQTGYQVIPNQQQNYQGIVGVQQPQSQSLVSGQPNSIGNQIQGVVI 550 560 570 580 590 600 270 280 290 300 310 320 FLJ003 PYAR-PIFLRLLPQVDTTGTFKIQKTRLQREGFDPRQTSDRLFFLDLKQGHYLPLNEAVY ::. : . ::: :. : . :. . : :.. KIAA00 PYTSVPTYQVSLPQ----GSQGIPHQTYQQPVMFPNQSNQGSMPTTGMPVYYSVIPPGQQ 610 620 630 640 650 330 FLJ003 TRICSGAFAL KIAA00 NNLSSSVGYLQHPGSEQVQFPRTTSPCSSQQLQGHQCTAGPPPPPGGGMVMMQLSVPNNP 660 670 680 690 700 710 333 residues in 1 query sequences 2210661 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:56 2009 done: Fri Feb 27 10:51:57 2009 Total Scan time: 0.470 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]