# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj05828.fasta.huge -Q ../query/FLJ00220.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00220, 503 aa vs ./tmplib.10216 library 2210491 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.1575+/-0.00585; mu= 18.9708+/- 0.395 mean_var=189.8002+/-41.470, 0's: 0 Z-trim: 1 B-trim: 27 in 1/39 Lambda= 0.093095 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0230 ( 1496 res) ha02538 (1496) 177 36.5 0.019 KIAA1965 ( 565 res) pj02601 ( 565) 120 28.1 2.4 FLJ00176 ( 403 res) sj00934 ( 403) 115 27.2 3.2 KIAA1205 ( 1217 res) fg03511a (1217) 119 28.6 3.8 KIAA1883 ( 1480 res) fh02249 (1480) 117 28.4 5 KIAA1870 ( 832 res) hh05136b ( 832) 111 27.2 6.6 FLJ00198 ( 677 res) sj03504 ( 677) 107 26.5 8.7 KIAA0314 ( 1899 res) af02425 (1899) 112 28.0 9 FLJ00269 ( 1383 res) sj06049 (1383) 110 27.5 9.3 KIAA0434 ( 1571 res) hh02165 (1571) 110 27.6 9.9 KIAA1602 ( 1003 res) fj10252 (1003) 107 26.8 11 KIAA0781 ( 950 res) hk09678 ( 950) 105 26.5 12 KIAA0362 ( 1108 res) hh00083 (1108) 105 26.6 13 KIAA1949 ( 662 res) fj02913 ( 662) 102 25.8 14 KIAA1614 ( 1208 res) fj12973 (1208) 105 26.7 14 KIAA1142 ( 467 res) hh05864 ( 467) 100 25.3 14 KIAA1125 ( 1205 res) hk07594 (1205) 104 26.5 15 KIAA0969 ( 1091 res) hj06525 (1091) 103 26.3 16 KIAA0497 ( 239 res) hg00150 ( 239) 95 24.1 16 KIAA1357 ( 836 res) fj01906 ( 836) 101 25.9 17 KIAA0097 ( 2038 res) ha00943(revised) (2038) 105 27.1 18 KIAA0521 ( 1050 res) hg01387 (1050) 101 26.0 19 KIAA0445 ( 1919 res) hg00102s1 (1919) 104 26.9 19 FLJ00038 ( 199 res) as00038 ( 199) 92 23.6 20 KIAA0309 ( 3053 res) hg00096s1 (3053) 106 27.5 20 FLJ00353 ( 1766 res) sh01144 (1766) 103 26.7 20 FLJ00324 ( 376 res) sj01157 ( 376) 95 24.5 20 KIAA0490 ( 135 res) hh00727 ( 135) 89 22.9 21 KIAA0429 ( 666 res) hk07754 ( 666) 97 25.2 22 KIAA0973 ( 1583 res) hj06871 (1583) 101 26.3 23 KIAA1071 ( 675 res) hj05664s2 ( 675) 96 25.0 24 KIAA0900 ( 503 res) hk09606s1 ( 503) 94 24.5 25 KIAA0999 ( 1371 res) fj10213 (1371) 99 26.0 26 KIAA0495 ( 209 res) hg00106 ( 209) 89 23.2 26 KIAA1029 ( 1015 res) fh00363 (1015) 97 25.5 27 KIAA0200 ( 1042 res) ha02508 (1042) 97 25.5 27 KIAA2009 ( 501 res) fj05611 ( 501) 93 24.4 28 FLJ00395 ( 1105 res) sj06062 (1105) 97 25.5 28 KIAA1727 ( 1130 res) pg00153 (1130) 97 25.6 28 KIAA1819 ( 1173 res) hh00456 (1173) 97 25.6 29 FLJ00112 ( 1192 res) as00112 (1192) 97 25.6 29 KIAA0561 ( 1308 res) hh01676 (1308) 97 25.7 30 KIAA1326 ( 424 res) fh14376 ( 424) 91 24.0 31 KIAA1022 ( 1131 res) fg00613 (1131) 96 25.4 31 KIAA0365 ( 1181 res) hh00120s1 (1181) 96 25.5 31 KIAA1133 ( 891 res) hg03758b ( 891) 94 25.0 33 FLJ00122 ( 1736 res) sh00417 (1736) 97 25.9 34 FLJ00134 ( 341 res) sh02437 ( 341) 88 23.5 36 KIAA0616 ( 634 res) hg03623 ( 634) 91 24.3 37 KIAA1619 ( 869 res) fj14720 ( 869) 92 24.7 39 >>KIAA0230 ( 1496 res) ha02538 (1496 aa) initn: 197 init1: 123 opt: 177 Z-score: 137.3 bits: 36.5 E(): 0.019 Smith-Waterman score: 177; 34.483% identity (62.069% similar) in 58 aa overlap (422-479:1437-1491) 400 410 420 430 440 450 FLJ002 PPVVPGLPALAPAKPGGPGRPRDPNTCFFEGQQRPHGARWAPNYDPLCSLCTCQRRTVIC :... ....: . :..: :. : : KIAA02 LEMQKTITDLRTQIKKLESRLSTTECVDAGGESHANNTKWKKDA---CTICECKDGQVTC 1410 1420 1430 1440 1450 1460 460 470 480 490 500 FLJ002 DPVVCPPPSCPHPVQAPDQCCPVCPEKQDVRDLPGLPRSRDPGEGGHWRGAL .::: .: ::. : ::::: .:. KIAA02 FVEACPPATCAVPVNIPGACCPVCLQKRAEEKP 1470 1480 1490 >>KIAA1965 ( 565 res) pj02601 (565 aa) initn: 166 init1: 85 opt: 120 Z-score: 99.6 bits: 28.1 E(): 2.4 Smith-Waterman score: 189; 36.471% identity (54.118% similar) in 85 aa overlap (403-485:32-114) 380 390 400 410 420 430 FLJ002 AAGAEGVRALGAPDTASAAPPVVPGLPALAPAKPGGPGRPRDPNTCFFEGQQRPHGARWA : . : : :. : ::: : .: .. KIAA19 QSPAEPCVLRQCQEGVVTESGVRCVVHCKNPLEHLGMCCPTCPG-CVFEGVQYQEGEEFQ 10 20 30 40 50 60 440 450 460 470 480 490 FLJ002 PNYDPLCSLCTCQRRTVICDPVVCPPPSCPHPVQ--APDQCCPVCPEKQDVRDLPGLPRS :. . :. :.: . : ::: :::. .. : :::: : .. : ::: KIAA19 PEGSK-CTKCSCTGGRTQCVREVCPILSCPQHLSHIPPGQCCPKCLGQRKVFDLPFGSCL 70 80 90 100 110 500 FLJ002 RDPGEGGHWRGAL KIAA19 FRSDVYDNGSSFLYDNCTACTCRDSTVVCKRKCSHPGGCDQGQEGCCEECLLRVPPEDIK 120 130 140 150 160 170 >>FLJ00176 ( 403 res) sj00934 (403 aa) initn: 124 init1: 45 opt: 115 Z-score: 97.2 bits: 27.2 E(): 3.2 Smith-Waterman score: 117; 31.618% identity (45.588% similar) in 136 aa overlap (374-498:18-141) 350 360 370 380 390 FLJ002 ITTKGSPRGELRGQVHIANQCEVGGLRLEAAGAEGVRALGAP----DTASAAPPVVPGLP :: . : : : . . :::..:: : FLJ001 GPQAASGLPHAHHQRAEAGHHQRRCLHLPGQTLQLSPEAPPLLPG-P 10 20 30 40 400 410 420 430 440 450 FLJ002 A--LAPAKPGGPGRPRDPNTCFFEGQQRPHGARWAPNY-DPLCSLCTCQRRTVICDPVVC : :: . . :. :. .: : : :: :: :. ::. .: FLJ001 AQRLAVESQAPAGQDAAPE----DGGPGPAG---APRCGDPGCA-GQAAARTAADQPCHR 50 60 70 80 90 460 470 480 490 500 FLJ002 PPPSCPHPVQAPDQCCPVCPEKQDVR-DLPGLPRSR---DPGEGGHWRGAL :: :. . : . :. : :: :::.. : : ::: FLJ001 EQPSGPQSLPLPGHHVPTAP---GVRWGSGGLPEGAGHGDRGPGGHGAAGTAPAVADLQR 100 110 120 130 140 150 FLJ001 LCRALLQAGRLPGGRAAAEQGPPGRAAGERTLHQPRRQFQKAENHFSTAIRHNPQKAQYY 160 170 180 190 200 210 >>KIAA1205 ( 1217 res) fg03511a (1217 aa) initn: 72 init1: 72 opt: 119 Z-score: 96.0 bits: 28.6 E(): 3.8 Smith-Waterman score: 119; 29.508% identity (45.902% similar) in 122 aa overlap (383-493:153-267) 360 370 380 390 400 410 FLJ002 ELRGQVHIANQCEVGGLRLEAAGAEGVRALGAPDTASAAPPVVPGLPALAPAKPGGPGR- : : :.:.:: :: :: : : ::: KIAA12 EERSFFPTMEEMFGGGAADDYGKAGPPEDEGDPK-AGAGPP--PGPPAYDPYGPYCPGRA 130 140 150 160 170 420 430 440 450 460 FLJ002 ----PRDPNTCFFEGQQRPHGARWAPNYDPLCSLCTCQRRTVICDPVVCPPPSCPHPVQA :. :. . ..: . : .:: . . .... : ::: : :.. KIAA12 SGAGPETPGLGL--DPNKPPELPSTVNAEPLGLIQSGPHQAA--PPPPPPPPPPPAPASE 180 190 200 210 220 230 470 480 490 500 FLJ002 PDQ------CCPVCPEKQDVRDLPGLPRSRDPGEGGHWRGAL : : . :.: . : : ::: KIAA12 PKGGLTSPIFCSTKPKKLLKTSSFHLLRRRDPPFQTPKKLYAQEYEFEADEDKADVPADI 240 250 260 270 280 290 KIAA12 RLNPRRLPDLVSSCRSRPALSPLGDIDFCPPNPGPDGPRRRGRKPTKAKRDGPPRPRGRP 300 310 320 330 340 350 >>KIAA1883 ( 1480 res) fh02249 (1480 aa) initn: 105 init1: 105 opt: 117 Z-score: 93.8 bits: 28.4 E(): 5 Smith-Waterman score: 117; 27.966% identity (43.220% similar) in 118 aa overlap (384-495:1091-1208) 360 370 380 390 400 410 FLJ002 LRGQVHIANQCEVGGLRLEAAGAEGVRALGAPDTASAAPP---VVPGLPALAPAKPGGPG :: . :: . :: :: :.: KIAA18 PTIGEPAPETSLERAPAPSAVVSSRNGGETAPGPLGPAPKNGTLEPGTERRAPETGGAPR 1070 1080 1090 1100 1110 1120 420 430 440 450 460 470 FLJ002 RPRDPNTCFFEGQQRPHGARWAPNYDPLCSLCTCQRRTVICDPVVCPPPSCPHPVQAPDQ : . : . : :. ::. : .. . . : ::: : : : . KIAA18 APGAGRLDLGSGGRAPVGTGTAPGGGPGSGVDAKAGWVDNTRPQPPPPPLPPPPEAQPRR 1130 1140 1150 1160 1170 1180 480 490 500 FLJ002 CCPVCPE-KQDV--RDLPGLPRSRDPGEGGHWRGAL :. :. . .: . :: : :: :. KIAA18 LEPAPPRARPEVAPEGEPGAPDSRAGGDTALSGDGDPPKPERKGPEMPRLFLDLGPPQGN 1190 1200 1210 1220 1230 1240 >>KIAA1870 ( 832 res) hh05136b (832 aa) initn: 110 init1: 72 opt: 111 Z-score: 91.6 bits: 27.2 E(): 6.6 Smith-Waterman score: 114; 30.282% identity (50.704% similar) in 142 aa overlap (301-432:248-373) 280 290 300 310 320 FLJ002 SLDTHCHLHYEVLLAGLGGSEQGTVTAHLLGPPGTPGPRRLLKGFYG-SEAQGVV-KDLE ::::::::. .: : . : : . . : KIAA18 GKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGTPGPKGS-RGSLGPTGAPGRMGAQGE 220 230 240 250 260 270 330 340 350 360 370 380 FLJ002 PELLRHLA-KGMASLMITTKGSPRGELRGQVHIANQCEVGGLRLEAAGAEGVRALGAP-- : : . . ::... . .:.:: .:. : : : .: : : . .: KIAA18 PGLAGYDGHKGIVGPL--GPPGPKGE-KGE-----QGEDG----KAEGPPGPPGDRGPVG 280 290 300 310 320 390 400 410 420 430 440 FLJ002 DTASAAPPVVPGLPALAPA-----KPGGPGRPRDPNTCFFEGQQRPHGARWAPNYDPLCS : .. . : :: :. . ::: :.: :. .: :.:.. : KIAA18 DRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPGHPGP---RGWPGPKGSKGAEGPKGKQG 330 340 350 360 370 380 450 460 470 480 490 500 FLJ002 LCTCQRRTVICDPVVCPPPSCPHPVQAPDQCCPVCPEKQDVRDLPGLPRSRDPGEGGHWR KIAA18 KAGAPGRRGVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGRDGQAGQQGEQGDDGDPGPMG 390 400 410 420 430 440 >>FLJ00198 ( 677 res) sj03504 (677 aa) initn: 100 init1: 100 opt: 107 Z-score: 89.5 bits: 26.5 E(): 8.7 Smith-Waterman score: 107; 32.877% identity (56.164% similar) in 73 aa overlap (343-415:503-568) 320 330 340 350 360 370 FLJ002 KGFYGSEAQGVVKDLEPELLRHLAKGMASLMITTKGSPRGELRGQVHIANQCEVGGLRLE .. :.: :: .. :. .:..:: . FLJ001 PGLGGIPCSVSVDSQWARGWGCPMQCECGPVVGTRGCPRHLAIANPHFWAECDAGGREGS 480 490 500 510 520 530 380 390 400 410 420 430 FLJ002 AAGAEGVRALGAPDTASAAPPVVPGLPALAPAKPGGPGRPRDPNTCFFEGQQRPHGARWA ::: . :: : :. :. : :. : :.:.: : . : FLJ001 FAGAAA-----APGGA-AGEPAGP-CPGAAAAEPAGAGAQQPPAGREVCAGDSGPGAAPE 540 550 560 570 580 440 450 460 470 480 490 FLJ002 PNYDPLCSLCTCQRRTVICDPVVCPPPSCPHPVQAPDQCCPVCPEKQDVRDLPGLPRSRD FLJ001 AGGAGGGGAGGTAVPGGDPRAAAGPASGPQGPGTAAAAAGGRARGTAGAAPRPQGQHAGT 590 600 610 620 630 640 >>KIAA0314 ( 1899 res) af02425 (1899 aa) initn: 80 init1: 57 opt: 112 Z-score: 89.3 bits: 28.0 E(): 9 Smith-Waterman score: 119; 22.967% identity (49.761% similar) in 209 aa overlap (303-495:1191-1387) 280 290 300 310 320 330 FLJ002 DTHCHLHYEVLLAGLGGSEQGTVTAHLLGPPGTPGPRRLLKGFYGSEAQGVVKDLEPELL ::. ::.: . :.... .:.:: KIAA03 ALFSMKMELAGSNTTASSPARARGRPRKTKPGSMQPRHLKSPVRGQDSEQPQAQLQPEAQ 1170 1180 1190 1200 1210 1220 340 350 360 370 380 FLJ002 RHL-AKGMASLMITTK---------GSPRGELRGQVHIANQCEVGGL-RLEAAGAEGVRA : :. . .:.. . ::: . ..: .... .. : . .. .. . KIAA03 LHAPAQPQPQLQLQLQSHKGFLEQEGSPLSLGQSQHDLSQSAFLSWLSQTQSHSSLLSSS 1230 1240 1250 1260 1270 1280 390 400 410 420 430 440 FLJ002 LGAPDTASAAPPVVPGLPALAPAKPGGPGRPRDPNTCFFE-GQQRPHGARWAPNYDPLCS . .::.. . .:. : : . . : ::.. .:. . : : .: ::. : : KIAA03 VLTPDSSPGKLDPAPSQPPEEPEPDEAESSP-DPQALWFNISAQMPCNA--APTPPPAVS 1290 1300 1310 1320 1330 450 460 470 480 490 FLJ002 LCTCQRRTVICDPVVCPPP-SCPHPVQAPDQCCPVCPEKQDVRDLPGL-PRSR--DPGEG .:. : . .:.. :. : : . . : :: :. : :::: KIAA03 ED---------QPTPSPQQLASSKPMNRPSAANPCSPVQFSSTPLAGLAPKRRAGDPGEM 1340 1350 1360 1370 1380 500 FLJ002 GHWRGAL KIAA03 PQSPTGLGQPKRRGRPPSKFFKQMEQRYLTQLTAQPVPPEMCSGWWWIRDPEMLDAMLKA 1390 1400 1410 1420 1430 1440 >>FLJ00269 ( 1383 res) sj06049 (1383 aa) initn: 94 init1: 56 opt: 110 Z-score: 89.0 bits: 27.5 E(): 9.3 Smith-Waterman score: 110; 42.000% identity (66.000% similar) in 50 aa overlap (381-426:1152-1201) 360 370 380 390 400 FLJ002 RGELRGQVHIANQCEVGGLRLEAAGAEGVRALGAPDTASAAPPVVPGL-PALAPAKPGGP : .:: .:::::. : :: .::.: :: FLJ002 DLCLENLLLVHCTLQAGPGPAPAPAPAPAPAAAAPPCSSAAPPAGGTLSPAAGPASPEGP 1130 1140 1150 1160 1170 1180 410 420 430 440 450 460 FLJ002 GR---PRDPNTCFFEGQQRPHGARWAPNYDPLCSLCTCQRRTVICDPVVCPPPSCPHPVQ . :: . :....:.: FLJ002 REKQLPRLIISNFLKAKQKPGSTPNLQQKKSQARLAPEIVSASQYRKFDEFQTGILIYEL 1190 1200 1210 1220 1230 1240 >>KIAA0434 ( 1571 res) hh02165 (1571 aa) initn: 95 init1: 57 opt: 110 Z-score: 88.5 bits: 27.6 E(): 9.9 Smith-Waterman score: 110; 25.926% identity (48.611% similar) in 216 aa overlap (226-437:1304-1507) 200 210 220 230 240 250 FLJ002 GICPGLGARGAHMLLQNELFLNVGTKDFPDGELRGHVAALPYCGHSARHDTLPVPLAGAL :: :. :: :. .::.. : .. KIAA04 WPHDEGGPGRHASAKEHRHGDHGRHSGRHTGEEPGRRAAKPHARDLGRHEARPHSQPSSA 1280 1290 1300 1310 1320 1330 260 270 280 290 300 310 FLJ002 VLPPVKSQAA--GHAWLSLDTHCHLHYEVLLAGLGGSEQGTVTAHLLGPPGTPGPRRLLK : :.: . . : : .. :. . ::.:. : . : . :. KIAA04 PAMPKKGQPGYPSSAEYSQPSRASSAYHHASDSKKGSRQAHSGPAALQSKAEPQAQPQLQ 1340 1350 1360 1370 1380 1390 320 330 340 350 360 370 FLJ002 GFYGSEAQGVVKDLEPELLRHLAKGMASLMITTKGSPRGELRGQVHIANQCEVGGLRLEA : . : : .. : :.. .: :: . :. . .: : : : . ::. KIAA04 GRQA--APGPQQSQSPSS-RQIPSGAASRQPQTQQQQQG-LGLQ---PPQQALTQARLQQ 1400 1410 1420 1430 1440 380 390 400 410 420 430 FLJ002 AGAEGVRALGAPDTASAAPPVVPGLPALAPA-KPGGPGRPRDPNTCFFEGQQR-PHGARW . .:. .:: ... : :: :. : . .:.:: :: .: .: . :. .: KIAA04 QSQPTTRG-SAPAASQPAGKPQPG-PSTATGPQPAGP--PRAEQTNGSKGTAKAPQQGR- 1450 1460 1470 1480 1490 1500 440 450 460 470 480 490 FLJ002 APNYDPLCSLCTCQRRTVICDPVVCPPPSCPHPVQAPDQCCPVCPEKQDVRDLPGLPRSR ::. .: KIAA04 APQAQPTPGPGPAGVKAGARPGGTPGAPAGQPGADGESVFSKILPGGAAEQAGKLTEAVS 1510 1520 1530 1540 1550 1560 503 residues in 1 query sequences 2210491 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:44:49 2009 done: Fri Feb 27 10:44:50 2009 Total Scan time: 0.570 Total Display time: 0.120 Function used was FASTA [version 34.26.5 April 26, 2007]