# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj06160.fasta.huge -Q ../query/FLJ00221.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00221, 298 aa vs ./tmplib.10216 library 2210696 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 11.4055+/-0.00938; mu= -14.8805+/- 0.628 mean_var=592.9775+/-134.209, 0's: 0 Z-trim: 5 B-trim: 0 in 0/40 Lambda= 0.052669 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1810 ( 579 res) fk03376 ( 579) 1684 141.8 8.7e-35 KIAA1205 ( 1217 res) fg03511a (1217) 258 33.9 0.056 KIAA1856 ( 1134 res) fh03203 (1134) 214 30.5 0.55 KIAA0675 ( 1217 res) hk02566 (1217) 211 30.3 0.67 KIAA0339 ( 1709 res) hg01304(revised) (1709) 212 30.6 0.78 KIAA0438 ( 726 res) hj00450 ( 726) 198 29.0 0.97 FLJ00353 ( 1766 res) sh01144 (1766) 206 30.1 1.1 KIAA0765 ( 952 res) hk04803s1 ( 952) 197 29.1 1.2 KIAA1818 ( 1157 res) hg00622 (1157) 198 29.3 1.3 KIAA1214 ( 462 res) fh01431 ( 462) 184 27.7 1.6 KIAA1172 ( 929 res) hj03919(revised) ( 929) 189 28.5 1.8 KIAA1100 ( 444 res) hk07907 ( 444) 173 26.8 2.7 KIAA0458 ( 1552 res) ef01252 (1552) 185 28.5 3.1 KIAA1902 ( 1112 res) hj04383 (1112) 181 28.0 3.1 FLJ00034 ( 1343 res) as00034 (1343) 179 27.9 3.8 KIAA0269 ( 567 res) ha06751 ( 567) 169 26.7 3.9 KIAA1429 ( 1795 res) fh08353 (1795) 181 28.3 4.1 KIAA0304 ( 2415 res) af07172 (2415) 184 28.7 4.2 KIAA1760 ( 2219 res) af00030 (2219) 182 28.5 4.4 KIAA0775 ( 639 res) hk05255 ( 639) 167 26.6 4.6 KIAA0616 ( 634 res) hg03623 ( 634) 166 26.5 4.8 KIAA1727 ( 1130 res) pg00153 (1130) 172 27.3 5 KIAA1133 ( 891 res) hg03758b ( 891) 168 26.9 5.4 KIAA0298 ( 901 res) hf00341(revised) ( 901) 167 26.8 5.7 KIAA1681 ( 1236 res) fh23697 (1236) 170 27.2 5.9 FLJ00163 ( 521 res) sh06933 ( 521) 159 25.9 6.2 KIAA0268 ( 1193 res) ha07061 (1193) 168 27.0 6.4 FLJ00086 ( 399 res) as00086 ( 399) 153 25.3 7.3 KIAA1139 ( 1124 res) hk00330 (1124) 162 26.5 8.4 KIAA0910 ( 1315 res) hg02207s1 (1315) 163 26.7 8.8 KIAA1064 ( 1315 res) hj05008s1 (1315) 162 26.6 9.3 KIAA0646 ( 486 res) hj03808 ( 486) 149 25.1 10 KIAA0782 ( 1281 res) hk05405s1 (1281) 160 26.5 10 KIAA1814 ( 1285 res) ph00952 (1285) 158 26.3 11 KIAA1375 ( 546 res) fj04426 ( 546) 148 25.1 11 KIAA0904 ( 1535 res) ha00554 (1535) 159 26.5 12 KIAA1357 ( 836 res) fj01906 ( 836) 152 25.6 12 KIAA1715 ( 429 res) hh02382 ( 429) 144 24.6 12 KIAA1076 ( 804 res) hj06779 ( 804) 151 25.5 12 KIAA1983 ( 418 res) fk09737(revised) ( 418) 143 24.5 13 KIAA0522 ( 1555 res) hg01393 (1555) 157 26.3 13 KIAA0244 ( 2044 res) ha04644s1 (2044) 159 26.7 14 KIAA0900 ( 503 res) hk09606s1 ( 503) 143 24.6 14 KIAA1366 ( 550 res) fj02695 ( 550) 144 24.8 14 KIAA1811 ( 715 res) ha06731 ( 715) 146 25.1 15 KIAA0437 ( 1605 res) hj00203s1 (1605) 155 26.2 15 KIAA1986 ( 334 res) pg00636 ( 334) 137 23.9 15 KIAA0666 ( 1085 res) hk02075 (1085) 150 25.6 16 FLJ00318 ( 127 res) sh07374 ( 127) 125 22.5 16 KIAA1014 ( 1050 res) hk02388s2 (1050) 148 25.4 17 >>KIAA1810 ( 579 res) fk03376 (579 aa) initn: 1676 init1: 1676 opt: 1684 Z-score: 717.9 bits: 141.8 E(): 8.7e-35 Smith-Waterman score: 1684; 96.386% identity (97.590% similar) in 249 aa overlap (47-291:141-389) 20 30 40 50 60 70 FLJ002 LGILDFLFVSHAYHSILTRGASVQLVFGFEYAILMTMVLTIFIKYVLHSVDLQSENPWDN :::::::::::::::::::::::::::::: KIAA18 DDFSPRFVALFTLLLFLKCFHWLAEDRVDFYAILMTMVLTIFIKYVLHSVDLQSENPWDN 120 130 140 150 160 170 80 90 100 110 120 130 FLJ002 KAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTFPLFAIRPMYLAMRQFKKAVTDAIMSRR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA18 KAVYMLYTELFTGFIKVLLYMAFMTIMIKVHTFPLFAIRPMYLAMRQFKKAVTDAIMSRR 180 190 200 210 220 230 140 150 160 170 180 190 FLJ002 AIRNMNTLYPDATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA18 AIRNMNTLYPDATPEELQAMDNVCIICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCP 240 250 260 270 280 290 200 210 220 230 240 250 FLJ002 TCRMDVLRASLPAQSPPPPEPADQGPPPAPHPPPLLPQPPNFPQGLLPPFPPGMFPLWPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA18 TCRMDVLRASLPAQSPPPPEPADQGPPPAPHPPPLLPQPPNFPQGLLPPFPPGMFPLWPP 300 310 320 330 340 350 260 270 280 290 FLJ002 MGPFPPVPPPPSSGEAVAPPSTSAG--EPLG--TVTARGRQGWNTH ::::::::::::::::::::::::. .: : :.:: : KIAA18 MGPFPPVPPPPSSGEAVAPPSTSAALSRPSGAATTTAAGTSATAASATASGPGSGSAPEA 360 370 380 390 400 410 KIAA18 GPAPGFPFPPPWMGMPLPPPFAFPPMPVPPAGFAGLTPEELRALEGHERQHLEARLQSLR 420 430 440 450 460 470 >>KIAA1205 ( 1217 res) fg03511a (1217 aa) initn: 636 init1: 199 opt: 258 Z-score: 128.8 bits: 33.9 E(): 0.056 Smith-Waterman score: 258; 47.368% identity (57.895% similar) in 76 aa overlap (208-280:638-712) 180 190 200 210 220 230 FLJ002 HIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPP-PEPADQGPPPAPHPPPLLPQPP : .::: : : : ::: : : : ::.:: KIAA12 AAAVPGPPPLPGLPSANSNGTPEPPLLEEKPPPTPPPAPTPQPQPPPPPPPPQPALPSPP 610 620 630 640 650 660 240 250 260 270 280 290 FLJ002 NF--PQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGEAVAPPSTSAGEPLGTVTARGRQG . : :: :: . : :: : :: ::::... .::: : KIAA12 PLVAPTPSSPP-PPPLPPPPPPAMPSPPPPPPPAAAPLAAPPEEPAAPSPEDPELPDTRP 670 680 690 700 710 720 FLJ002 WNTH KIAA12 LHLAKKQETAAVCGETDEEAGESGGEGIFRERDEFVIRAEDIPSLKLALQTGREPPPIWR 730 740 750 760 770 780 >>KIAA1856 ( 1134 res) fh03203 (1134 aa) initn: 410 init1: 165 opt: 214 Z-score: 111.0 bits: 30.5 E(): 0.55 Smith-Waterman score: 215; 45.205% identity (56.164% similar) in 73 aa overlap (206-278:947-1009) 180 190 200 210 220 230 FLJ002 CNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPHPPPLLPQP .::... :: : ::: :::: :: : KIAA18 GRAKDRKDPRKKKKGKEAGPGAGLPPPRAPALPSEARAPPPP----PPPPPHPP--LPPP 920 930 940 950 960 970 240 250 260 270 280 290 FLJ002 PNFPQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGEAVAPPSTSAGEPLGTVTARGRQGW : : ::.: . :: :: : : :::: . ::.: KIAA18 PLPP----PPLPLRLPPLPPPPLPRPHPPPPPPLPPLLPPPQTRTLPAARTMRQPPPPRL 980 990 1000 1010 1020 FLJ002 NTH KIAA18 ALPRRRRSPPRPPSRPARRGPRPTPQARRRPRPSPRRLLRSPHSLCSPRLRPGPRADPRR 1030 1040 1050 1060 1070 1080 >>KIAA0675 ( 1217 res) hk02566 (1217 aa) initn: 160 init1: 160 opt: 211 Z-score: 109.5 bits: 30.3 E(): 0.67 Smith-Waterman score: 211; 40.580% identity (69.565% similar) in 69 aa overlap (148-215:1145-1210) 120 130 140 150 160 170 FLJ002 YLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNVCIICREEMVT-GAKRLPC ..:.: . .. :.::.:.. . . ::: KIAA06 HSPSQPDAAQPPKPAWRPLTSQGPATWEGASNPDEEEEEEEPCVICHENLSPENLSVLPC 1120 1130 1140 1150 1160 1170 180 190 200 210 220 230 FLJ002 NHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPHPPPLLPQPP : ::..:.: :...: ::::::. :: :: . : : KIAA06 AHKFHAQCIRPWLMQQGTCPTCRLHVL---LPEEFPGHPSRQLPKI 1180 1190 1200 1210 240 250 260 270 280 290 FLJ002 NFPQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGEAVAPPSTSAGEPLGTVTARGRQGWN >>KIAA0339 ( 1709 res) hg01304(revised) (1709 aa) initn: 170 init1: 170 opt: 212 Z-score: 108.3 bits: 30.6 E(): 0.78 Smith-Waterman score: 212; 40.909% identity (51.136% similar) in 88 aa overlap (191-267:573-655) 170 180 190 200 210 FLJ002 IICREEMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQ--SPPP-PEP ..:. : : .. : . :::: : : KIAA03 PPPAPANFEDVAPTGSGEPGATRESPKANGQNQASPCSSGDDMEISDDDRGGSPPPAPTP 550 560 570 580 590 600 220 230 240 250 260 FLJ002 ADQGPPPAPHPPPLLPQ--------PPNFPQGLLPPFPPGMFPLWPPMGPFPPVPPPPSS .: ::: : ::: : ::. : :::: : : :: .:: :::: KIAA03 PQQPPPPPPPPPPPPPYLASLPLGYPPHQPAYLLPPRPDG-----PPPPEYPPPPPPPPH 610 620 630 640 650 270 280 290 FLJ002 GEAVAPPSTSAGEPLGTVTARGRQGWNTH KIAA03 IYDFVNSLELMDRLGAQWGGMPMSFQMQTQMLTRLHQLRQGKGLIAASAGPPGGAFGEAF 660 670 680 690 700 710 >>KIAA0438 ( 726 res) hj00450 (726 aa) initn: 209 init1: 180 opt: 198 Z-score: 106.6 bits: 29.0 E(): 0.97 Smith-Waterman score: 202; 36.047% identity (56.977% similar) in 86 aa overlap (147-223:632-717) 120 130 140 150 160 FLJ002 MYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEELQAMDNV-------CIICREEMVT :. :: : :.. : :: :.. KIAA04 AQAMETALAHLESLAVDVEVANPPASKESIDGLPETLVLEDHTAIGQEQCCPICCSEYIK 610 620 630 640 650 660 170 180 190 200 210 220 FLJ002 G--AKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPAPH : .:::.:.:: :. :.:.. :::.:: : . :.. : :: ..:: KIAA04 DDIATELPCHHFFHKPCVSIWLQKSGTCPVCRRHFPPAVIEASAAPSSEPDPDAPPSNDS 670 680 690 700 710 720 230 240 250 260 270 280 FLJ002 PPPLLPQPPNFPQGLLPPFPPGMFPLWPPMGPFPPVPPPPSSGEAVAPPSTSAGEPLGTV KIAA04 IAEAP >>FLJ00353 ( 1766 res) sh01144 (1766 aa) initn: 418 init1: 128 opt: 206 Z-score: 105.7 bits: 30.1 E(): 1.1 Smith-Waterman score: 214; 42.157% identity (53.922% similar) in 102 aa overlap (196-288:157-254) 170 180 190 200 210 220 FLJ002 EMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQSPPPPEPADQGPPPA :: :: ::: :: :: :: FLJ003 NSFQNMKNQYMGNMSMPPPFVPYSQMPPPLPTMPPPVLPPSLPPPVMPPALPATVPPPGM 130 140 150 160 170 180 230 240 250 260 270 FLJ002 PHP--PPLLPQ---PPNFPQGLLPPFPPGMFPLWPP----MGPFPPVPPPPSSGEAVAPP : : :: :: ::..: .: :: ..: :: :: ::: :::: . ..::: FLJ003 PPPVMPPSLPTSVPPPGMPPSLSSAGPPPVLP--PPSLSSAGP-PPVLPPPSLS-STAPP 190 200 210 220 230 240 280 290 FLJ002 STSAGEPLGTVTARGRQGWNTH . ::...: FLJ003 PVMPLPPLSSATPPPGIPPPGVPQGIPPQLTAAPVPPASSSQSSQVPEKPRPALLPTPVS 250 260 270 280 290 300 >>KIAA0765 ( 952 res) hk04803s1 (952 aa) initn: 123 init1: 123 opt: 197 Z-score: 104.9 bits: 29.1 E(): 1.2 Smith-Waterman score: 197; 40.000% identity (47.368% similar) in 95 aa overlap (196-285:189-278) 170 180 190 200 210 220 FLJ002 EMVTGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPAQS-PPPP-EPADQGP- :: : .. : .. :::: : : KIAA07 SVHESNKNIQTFSTASVGTAPPNMGASFGSPTFSSTVPSTASPMNTVPPPPIPPIPAMPS 160 170 180 190 200 210 230 240 250 260 270 280 FLJ002 -PPAPHPPPLLPQPPNFPQGLLPPFPPGMFPLWPPMGPFPPVPP-PPSSGEAVAPPSTSA :: : ::. : :: : ::: :: : ::. ::. : :: :: : : KIAA07 LPPMPSIPPI-PVPPPVPT--LPPVPP--VPPIPPVPSVPPMTPLPPMSGMPPLNPPPVA 220 230 240 250 260 270 290 FLJ002 GEPLGTVTARGRQGWNTH : : KIAA07 PLPAGMNGSGAPMNLNNNLNPMFLGPLNPVNPIQMNSQSSVKPLPINPDDLYVSVHGMPF 280 290 300 310 320 330 >>KIAA1818 ( 1157 res) hg00622 (1157 aa) initn: 241 init1: 119 opt: 198 Z-score: 104.4 bits: 29.3 E(): 1.3 Smith-Waterman score: 198; 42.169% identity (59.036% similar) in 83 aa overlap (201-281:528-603) 180 190 200 210 220 FLJ002 AKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPA-QSPPPPEPADQGPPPAPHPP : .:. :: .::::.: : ::: .:: KIAA18 SGINYDKPLPPIQVASLRAERIAKEKKALADQQKAQQPAVAQPPPPQP--QPPPPPQQPP 500 510 520 530 540 550 230 240 250 260 270 280 FLJ002 PLLPQPPNFPQGLLPPF-PPGMFPLWPPMGPFPPVPPPPSSGEAVAPPSTSAGEPLGTVT : :::: : :: ::.. : :. : : . : : .. : : :. ..: KIAA18 PPLPQPQA--AGSQPPAGPPAVQP--QPQ-PQPQTQPQPVQAPAKAQPAITTGGSAAVLA 560 570 580 590 600 610 290 FLJ002 ARGRQGWNTH KIAA18 GTIKTSVTGTSMPTGAVSGNVIVNTIAGVPAATFQSINKRLASPVAPGALTTPGGSAPAQ 620 630 640 650 660 670 >>KIAA1214 ( 462 res) fh01431 (462 aa) initn: 155 init1: 155 opt: 184 Z-score: 102.9 bits: 27.7 E(): 1.6 Smith-Waterman score: 184; 28.571% identity (58.824% similar) in 119 aa overlap (117-223:257-374) 90 100 110 120 130 140 FLJ002 FTGFIKVLLYMAFMTIMIKVHTFPLFAIRPMYLAM--RQFKKAVTDAIMSRRAIRNMNTL ::... :...: . ...:: ... KIAA12 AGVEDIVAIMIPEPKGKEIVSLLERNITVTMYITIGTRNLQKYRRLGDAAKKAISKLQIR 230 240 250 260 270 280 150 160 170 180 190 200 FLJ002 YPDATPEELQA-MDNVCIICREEMVTG--AKRLPCNHIFHTSCLRSWFQRQQTCPTCRMD .: .. .:: : .: : . . .. ::: :.:: ::. :. ..::: :.:. KIAA12 TIKKGDKETESDFDN-CAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMN 290 300 310 320 330 340 210 220 230 240 250 FLJ002 VLRA-SLPAQS------PPPPEPADQGPPPAPHPPPLLPQPPNFPQGLLPPFPPGMFPLW .:.: ..: .. : : . ::: KIAA12 ILKALGIPPNADCMDDLPTDFEGSLGGPPTNQITGASDTTVNESSVTLDPAVRTVGALQV 350 360 370 380 390 400 298 residues in 1 query sequences 2210696 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:44:50 2009 done: Fri Feb 27 10:44:50 2009 Total Scan time: 0.440 Total Display time: 0.060 Function used was FASTA [version 34.26.5 April 26, 2007]