# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj06258.fasta.huge -Q ../query/FLJ00338.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00338, 114 aa vs ./tmplib.10216 library 2210880 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 5.2356+/-0.00448; mu= 9.7587+/- 0.304 mean_var=112.4620+/-24.286, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.120940 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0945 ( 797 res) hj04760 ( 797) 110 28.7 0.52 KIAA0872 ( 552 res) hk07213 ( 552) 91 25.2 4.1 KIAA0026 ( 288 res) ha00640 ( 288) 86 24.0 4.9 FLJ00308 ( 233 res) sh05935 ( 233) 84 23.5 5.5 FLJ00117 ( 331 res) as00117 ( 331) 85 23.9 6.1 FLJ00034 ( 1343 res) as00034 (1343) 92 25.8 6.3 KIAA1110 ( 740 res) hh04831b(revised) ( 740) 88 24.8 7 KIAA1310 ( 794 res) fh10589 ( 794) 88 24.9 7.4 KIAA1813 ( 673 res) ph00819b ( 673) 86 24.4 8.4 KIAA0510 ( 95 res) hh00345 ( 95) 72 20.9 13 KIAA0295 ( 981 res) hf00226 ( 981) 84 24.3 14 KIAA1962 ( 746 res) hm00158 ( 746) 82 23.8 15 KIAA0138 ( 962 res) ha03743 ( 962) 83 24.1 15 KIAA0333 ( 1223 res) pf04993 (1223) 84 24.4 16 KIAA1750 ( 431 res) pj02374 ( 431) 77 22.6 19 KIAA1741 ( 1777 res) fh23254 (1777) 84 24.6 20 KIAA1928 ( 757 res) fg05950(revised) ( 757) 79 23.3 21 KIAA0575 ( 952 res) hj00216 ( 952) 80 23.6 22 FLJ00018 ( 1430 res) as00018 (1430) 82 24.1 22 FLJ00169 ( 432 res) sh07709 ( 432) 75 22.3 24 KIAA0301 ( 3210 res) hf00402s1 (3210) 85 25.1 25 FLJ00412 ( 749 res) sf00011 ( 749) 77 22.9 27 KIAA1739 ( 963 res) pj00464 ( 963) 78 23.2 28 KIAA0790 ( 1319 res) hk05609 (1319) 79 23.5 30 KIAA0359 ( 760 res) hh00048 ( 760) 76 22.7 30 KIAA0979 ( 1483 res) hj07056s1 (1483) 79 23.6 32 KIAA1740 ( 1119 res) pj00674 (1119) 77 23.1 34 KIAA0306 ( 1451 res) hg00063 (1451) 78 23.4 36 FLJ00197 ( 178 res) sj03274 ( 178) 67 20.4 36 KIAA1870 ( 832 res) hh05136b ( 832) 75 22.6 36 KIAA0380 ( 1539 res) hh00518 (1539) 78 23.5 37 KIAA1299 ( 730 res) fg04370 ( 730) 74 22.4 38 KIAA0339 ( 1709 res) hg01304(revised) (1709) 78 23.5 40 KIAA1367 ( 579 res) fj03001 ( 579) 72 21.9 41 KIAA0561 ( 1308 res) hh01676 (1308) 76 23.0 43 KIAA1064 ( 1315 res) hj05008s1 (1315) 76 23.0 43 KIAA1849 ( 1114 res) fg05386(revised) (1114) 75 22.8 43 KIAA2035 ( 1135 res) ff09201 (1135) 75 22.8 44 FLJ00368 ( 299 res) sh06338 ( 299) 68 20.8 44 KIAA0222 ( 1204 res) ha02586 (1204) 75 22.8 46 KIAA2022 ( 1520 res) ff04229 (1520) 76 23.1 47 FLJ00001 ( 155 res) as00001 ( 155) 64 19.8 47 KIAA0775 ( 639 res) hk05255 ( 639) 71 21.8 50 KIAA1447 ( 1721 res) fh04686 (1721) 76 23.2 51 KIAA1192 ( 262 res) hj01820a ( 262) 66 20.4 52 FLJ00419 ( 229 res) sj09483 ( 229) 65 20.2 53 KIAA1532 ( 601 res) fg04455(revised) ( 601) 70 21.6 54 FLJ00224 ( 896 res) sj06244 ( 896) 72 22.1 54 KIAA1949 ( 662 res) fj02913 ( 662) 70 21.6 57 KIAA1823 ( 377 res) fj18328 ( 377) 67 20.8 57 >>KIAA0945 ( 797 res) hj04760 (797 aa) initn: 83 init1: 52 opt: 110 Z-score: 111.5 bits: 28.7 E(): 0.52 Smith-Waterman score: 110; 34.524% identity (55.952% similar) in 84 aa overlap (32-110:147-219) 10 20 30 40 50 60 FLJ003 CDVLVEEFEEVIEDWYRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKK : .:. .::: :: .. :: KIAA09 PPSPAPSSEDPGLAQPRKRRLASLNAEALNNLLLEREDTSSLAGTRRSRAGDP------- 120 130 140 150 160 70 80 90 100 110 FLJ003 SKKKSSRAKAAGGRSSSSKQRKELGGLEG-----DPSPEEDEGIQKASPLTPSPPDEL ... .: .:.:: ::: :.: .:: : : .: : ::: .. . :.: KIAA09 -HRSRDRDRATGGWSSS-KKRPRLGDLGGGSRDLSPEPAPDEGPRRDGD--PAPKRLASL 170 180 190 200 210 220 KIAA09 NAAAFLKLSQERELPLRLPRAHAEVDGRSTEPPAPKAPRPKWPKVNGKNYPKAWQGASSG 230 240 250 260 270 280 >>KIAA0872 ( 552 res) hk07213 (552 aa) initn: 104 init1: 65 opt: 91 Z-score: 95.4 bits: 25.2 E(): 4.1 Smith-Waterman score: 91; 28.571% identity (53.968% similar) in 63 aa overlap (57-113:8-70) 30 40 50 60 70 80 FLJ003 EFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELG .:: . . :. . :.. .: : KIAA08 NRDVQMEVGGDTAAPAPGGAEDLEDTQFPSEEAREGG 10 20 30 90 100 110 FLJ003 GLEGDPSPEEDEGIQ------KASPLTPSPPDEL :... : ::::.. : .: .:::: . KIAA08 GVHAVPPDPEDEGLEETGSKDKDQPPSPSPPPQSEALSSTSRLWSPAAPENSPTCSPESS 40 50 60 70 80 90 KIAA08 SGGQGGDPSDEEWRSQRKHVFVLSEAGKPIYSRYGSVEALSATMGVMTALVSFVQSAGDA 100 110 120 130 140 150 >>KIAA0026 ( 288 res) ha00640 (288 aa) initn: 58 init1: 58 opt: 86 Z-score: 93.9 bits: 24.0 E(): 4.9 Smith-Waterman score: 86; 22.667% identity (64.000% similar) in 75 aa overlap (43-114:55-129) 20 30 40 50 60 70 FLJ003 IEDWYRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGG-KKSKKKSSRAKA : .:.:..... :. .:..:..... . KIAA00 TRSNMQRSKMRGASSGKKTAGPQQKNLEPALPGRWGGRSAENPPSGSVRKTRKNKQKTPG 30 40 50 60 70 80 80 90 100 110 FLJ003 AG--GRSSSSKQRKELGGLEGDPSPEEDEGIQKASPLTPSPPDEL : : .: . : . ..::. : .:.... . . :.:: KIAA00 NGDGGSTSEAPQPPRKKRARADPTVESEEAFKNRMEVKVKIPEELKPWLVEDWDLVTRQK 90 100 110 120 130 140 KIAA00 QLFQLPAKKNVDAILEEYANCKKSQGNVDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFER 150 160 170 180 190 200 >>FLJ00308 ( 233 res) sh05935 (233 aa) initn: 57 init1: 57 opt: 84 Z-score: 93.1 bits: 23.5 E(): 5.5 Smith-Waterman score: 84; 31.481% identity (64.815% similar) in 54 aa overlap (58-111:140-191) 30 40 50 60 70 80 FLJ003 FLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGG : :. . :: :.....:::. . . .: FLJ003 SQHLPPKVEFGVYESGPRKSVIPPRTELRRGDWKTDSTSSTASSTSNRSSTRSLLSVSSG 110 120 130 140 150 160 90 100 110 FLJ003 LEGDPSPEEDEGIQKASPLTPSPPDEL .::: :..: . . .:.:: FLJ003 MEGD--NEDNEVPEVTRSRSPGPPQVDGTPTMSLERPPRVPPRAASQRPPTRETFHPPPP 170 180 190 200 210 220 >>FLJ00117 ( 331 res) as00117 (331 aa) initn: 41 init1: 41 opt: 85 Z-score: 92.3 bits: 23.9 E(): 6.1 Smith-Waterman score: 86; 30.435% identity (55.072% similar) in 69 aa overlap (45-113:243-300) 20 30 40 50 60 70 FLJ003 DWYRNHQEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGG :.: :..: : . : .::. FLJ001 DADEDPADALKGGLPAARFSPAVPSVDSAVESW-----DSSATEGGFGGPGSYTPQAAA- 220 230 240 250 260 80 90 100 110 FLJ003 RSSSSKQRKELGGLEGDPSPEEDEGIQKASPLTPSPPDEL :... ..:. : :.:.: : : . . ::.: :: FLJ001 RGTTPQERRP-GWLRGSPPPTEP----RRTSYTPTPADESFPEEEEEDDWEPPTRHPVSP 270 280 290 300 310 320 FLJ001 LSTPSHLPLF 330 >>FLJ00034 ( 1343 res) as00034 (1343 aa) initn: 135 init1: 64 opt: 92 Z-score: 92.0 bits: 25.8 E(): 6.3 Smith-Waterman score: 92; 35.593% identity (61.017% similar) in 59 aa overlap (58-113:774-831) 30 40 50 60 70 80 FLJ003 FLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQ---RKE :::.:.: :. ::.. ::: .. :: FLJ000 SDPRGPSPAPASSPKREVLYDSEGLSGEERGGKSSQKDRRRSGAASSSSSSREKGSRRKA 750 760 770 780 790 800 90 100 110 FLJ003 LGGLEGDPSPEEDEGIQKASPLTPSPPDEL : : . : . ..:. ...: :: : FLJ000 LDGGDRDRDRDRDRDRDRSSK-KARPPKESAPSSGPPPKPPVSSGSGSSSSSSSCSSRKV 810 820 830 840 850 860 >>KIAA1110 ( 740 res) hh04831b(revised) (740 aa) initn: 51 init1: 51 opt: 88 Z-score: 91.2 bits: 24.8 E(): 7 Smith-Waterman score: 107; 24.000% identity (51.200% similar) in 125 aa overlap (2-111:518-642) 10 20 30 FLJ003 QCDVLVEEFEEVIEDWYRNHQE-EDLTEFLC : . .:... .:: .. : .: .. KIAA11 FQLFENEYYSHGITLVTPLSGSEKKQVLHFCALGSDEMQKFVEDLKESIAEVTELEQIRI 490 500 510 520 530 540 40 50 60 70 80 FLJ003 ANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSS--RAKAA--------GGRSSSSK .. : . :. :. . : .:: . :. . :. . : . : .: ..:. KIAA11 EWELEKQQGTKTLSFKPCGAQGDPQSKQGSPTAKREAALRERPAESTVEVSIHNRLQTSQ 550 560 570 580 590 600 90 100 110 FLJ003 QRKELGGLEGDPSPEED----EGIQKASPLTPSPPDEL . . ::. .: : : : :.. :: : :: KIAA11 HNSGLGAERGAPVPPPDLQPSPPRQQTPPLPPPPPTPPGTLVQCQQIVKVIVLDKPCLAR 610 620 630 640 650 660 KIAA11 MEPLLSQALSCYTSSSSDSCGSTPLGGPGSPVKVTHQPPLPPPPPPYNHPHQFCPPGSLL 670 680 690 700 710 720 >>KIAA1310 ( 794 res) fh10589 (794 aa) initn: 100 init1: 46 opt: 88 Z-score: 90.8 bits: 24.9 E(): 7.4 Smith-Waterman score: 88; 36.923% identity (58.462% similar) in 65 aa overlap (51-109:667-728) 30 40 50 60 70 FLJ003 QEEDLTEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGR----- .:::: :: . ...: .::::. KIAA13 RVQLKRHHPSSPLPGSKTSKRPKIKVSLISQGDTA--GGPCAPSQGSAPEAAGGKPITMT 640 650 660 670 680 690 80 90 100 110 FLJ003 -SSSSKQRKELGGLEGDPSPEEDEGIQKASPLTPSPPDEL ...: ::: :: . .:: .:::. :: KIAA13 LGQASAGAKELTGLLTTAKSSSSEGGVSASPV-PSVVSSSTAPSALHTLQSRLVATSPGS 700 710 720 730 740 750 KIAA13 SLPGATSASSLLQGLSFSLQDISSKTSGLPANPSPGPAPQA 760 770 780 790 >>KIAA1813 ( 673 res) ph00819b (673 aa) initn: 124 init1: 64 opt: 86 Z-score: 89.7 bits: 24.4 E(): 8.4 Smith-Waterman score: 86; 31.818% identity (54.545% similar) in 66 aa overlap (56-113:260-325) 30 40 50 60 70 80 FLJ003 TEFLCANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKEL :: : .. ... .:::::::. : KIAA18 SSLPTYSTGGAEPTTSSPGGHLPSHGSGRGALPGPARGVPTGPSHSDSGRSSSSKSTGSL 230 240 250 260 270 280 90 100 110 FLJ003 GG-----LEGD---PSPEEDEGIQKASPLTPSPPDEL :: : :. ::. . ... : : ::.. KIAA18 GGRVAGGLLGSGTRASPDSSSCGERSPPPPPPPPSDEALLHCVLEGKLRDREAELQQLRD 290 300 310 320 330 340 KIAA18 SLDENEATMCQAYEERQRHWQREREALREDCAAQAQRAQRAQQLLQLQVFQLQQEKRQLQ 350 360 370 380 390 400 >>KIAA0510 ( 95 res) hh00345 (95 aa) initn: 70 init1: 46 opt: 72 Z-score: 86.2 bits: 20.9 E(): 13 Smith-Waterman score: 72; 32.727% identity (56.364% similar) in 55 aa overlap (60-112:12-61) 30 40 50 60 70 80 FLJ003 CANHVLKGKDTSCLAEQWSGKKGDTAALGGKKSKKKSSRAKAAGGRSSSSKQRKELGGLE ... : . : : :.::.. :. :: KIAA05 GQGAEGPPGTPRRTGKGNRRKKRAAGRGALSR-----GGDS 10 20 30 90 100 110 FLJ003 GDPSP--EEDEGIQKASPLTPSPPDEL . :: .:: . :.: ::: . KIAA05 APLSPGDKEDASHQEALGNLPSPSEHAHFIKEVEMEKDYVLSIQVKVKKHQWKQKSSFY 40 50 60 70 80 90 114 residues in 1 query sequences 2210880 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:51:58 2009 done: Fri Feb 27 10:51:58 2009 Total Scan time: 0.300 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]