# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj06426.fasta.huge -Q ../query/FLJ00396.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00396, 172 aa vs ./tmplib.10216 library 2210822 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 2.3365+/-0.00404; mu= 29.4310+/- 0.275 mean_var=106.9775+/-23.054, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.124002 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0847 ( 645 res) hk05395 ( 645) 97 27.0 2.1 KIAA1205 ( 1217 res) fg03511a (1217) 97 27.6 2.5 FLJ00284 ( 366 res) sh02281 ( 366) 91 25.3 3.7 FLJ00019 ( 732 res) as00019 ( 732) 92 26.2 4 KIAA1233 ( 1023 res) fh08611 (1023) 92 26.6 4.4 KIAA2011 ( 1091 res) pj02017 (1091) 92 26.6 4.5 FLJ00281 ( 1495 res) sh01915 (1495) 92 26.9 4.9 KIAA0322 ( 1614 res) hg00462s1 (1614) 90 26.7 6.4 KIAA0279 ( 2854 res) ff05612 (2854) 91 27.4 6.7 FLJ00072 ( 204 res) as00072 ( 204) 80 22.8 12 FLJ00283 ( 500 res) sh02088 ( 500) 82 24.0 12 FLJ00220 ( 503 res) sj05828 ( 503) 82 24.0 12 FLJ00134 ( 341 res) sh02437 ( 341) 81 23.5 12 KIAA0208 ( 748 res) ha02713 ( 748) 81 24.3 16 KIAA0474 ( 782 res) fj12051 ( 782) 81 24.3 16 KIAA1737 ( 400 res) pj00125 ( 400) 79 23.3 17 KIAA1781 ( 974 res) fg06971(revised) ( 974) 81 24.5 17 FLJ00214 ( 322 res) sj05155 ( 322) 78 22.9 18 KIAA1820 ( 1644 res) hh01321 (1644) 81 25.1 20 KIAA0514 ( 483 res) hf00310 ( 483) 78 23.3 20 FLJ00067 ( 574 res) as00067 ( 574) 78 23.5 21 KIAA1585 ( 595 res) fj07340 ( 595) 78 23.5 21 KIAA0813 ( 1618 res) pf00581 (1618) 80 24.9 22 KIAA2035 ( 1135 res) ff09201 (1135) 79 24.3 23 KIAA1135 ( 789 res) hj05037 ( 789) 78 23.8 23 KIAA1803 ( 1412 res) fj22564s1 (1412) 79 24.6 24 KIAA0993 ( 1556 res) bf03014 (1556) 79 24.7 25 KIAA0434 ( 1571 res) hh02165 (1571) 79 24.7 25 KIAA0902 ( 910 res) hk09777 ( 910) 77 23.8 27 KIAA0226 ( 973 res) fg02838 ( 973) 77 23.8 28 KIAA1991 ( 712 res) bf00209 ( 712) 76 23.3 29 KIAA0582 ( 760 res) fh15957 ( 760) 76 23.4 29 KIAA0508 ( 253 res) hh00207 ( 253) 73 21.7 31 KIAA0194 ( 1435 res) ha02703 (1435) 77 24.2 31 KIAA0048 ( 627 res) ha01311 ( 627) 75 23.0 31 KIAA0310 ( 2388 res) ee03470 (2388) 78 24.9 32 KIAA1616 ( 1017 res) fj13825 (1017) 76 23.7 32 KIAA1917 ( 702 res) fk00028 ( 702) 75 23.1 32 KIAA0481 ( 732 res) hm00132 ( 732) 75 23.2 33 KIAA0622 ( 1289 res) hg04583 (1289) 76 23.9 34 KIAA1311 ( 889 res) fh11512 ( 889) 75 23.4 34 FLJ00070 ( 1382 res) as00070 (1382) 76 24.0 35 KIAA0553 ( 1450 res) pf08859 (1450) 76 24.0 35 KIAA1014 ( 1050 res) hk02388s2 (1050) 75 23.5 36 KIAA0959 ( 820 res) hj05718 ( 820) 74 23.1 38 KIAA1056 ( 870 res) hh11792 ( 870) 74 23.2 39 KIAA0375 ( 1540 res) hh00360s1 (1540) 75 23.9 40 KIAA0321 ( 1542 res) hg00426 (1542) 75 23.9 40 KIAA0405 ( 706 res) hg01274 ( 706) 73 22.8 41 KIAA1308 ( 745 res) fh08652 ( 745) 73 22.8 42 >>KIAA0847 ( 645 res) hk05395 (645 aa) initn: 91 init1: 67 opt: 97 Z-score: 100.7 bits: 27.0 E(): 2.1 Smith-Waterman score: 97; 30.645% identity (49.194% similar) in 124 aa overlap (60-171:487-603) 30 40 50 60 70 80 FLJ003 SCMTRPLFSVTSWVRRRFCSFSIRIVCCCHPGKEVNVRA----GQRGPEEDVGRARLAPA :: :. .: :. . . :. .::: KIAA08 PVSWVNTDQVNSSTSSQFFPRPPPGKPPTRPGVEARLRRYKVLGSSNSDSDL-FSRLAQI 460 470 480 490 500 510 90 100 110 120 130 FLJ003 AASNSPTHRATSCTLGSSRPSGWGLPAGPKSALALLWPRRHW----RSC----TGCSRCW ..: :.:. . . : . : ::: .. ::: :: :. : KIAA08 LQNGSQKPRSTTQCKSPGSPHNPKTP--PKSPVV---PRRSPSASPRSSSLPRTSSSSPS 520 530 540 550 560 570 140 150 160 170 FLJ003 YQSRPRHHLQTLQQHHLLLLQAPSSASGGRSRRRW .:: :: : .. :: ..: : ::. : :: KIAA08 RAGRP-HHDQRSSSPHLGRSKSPPSHSGSSSSRRSCQQEHCKPSKNGLKGSGSLHHHSAS 580 590 600 610 620 KIAA08 TKTPQGKSKPASKLSR 630 640 >>KIAA1205 ( 1217 res) fg03511a (1217 aa) initn: 109 init1: 52 opt: 97 Z-score: 99.3 bits: 27.6 E(): 2.5 Smith-Waterman score: 98; 27.451% identity (48.039% similar) in 102 aa overlap (26-119:304-395) 10 20 30 40 50 FLJ003 RWSPEASPSCWLRAWASNSCFIMSADFCSSCMTRPLFSVTSWVRRRFCSFSIRIV :. ::: .:: .: . . :: . KIAA12 KLYAQEYEFEADEDKADVPADIRLNPRRLPDLVSSCRSRPALSPLGDI--DFCPPN---- 280 290 300 310 320 60 70 80 90 100 FLJ003 CCCHPGKEVNVRAGQR-------GPEEDVGRARLAP-AAASNSPTHRATSCTLGSSRPSG :: . : :.. :: . :: :. : . ... :.. : :...: : KIAA12 ----PGPDGPRRRGRKPTKAKRDGPPRPRGRPRIRPLEVPTTAGPASASTPTDGAKKPRG 330 340 350 360 370 380 110 120 130 140 150 160 FLJ003 WGLPAGPKSALALLWPRRHWRSCTGCSRCWYQSRPRHHLQTLQQHHLLLLQAPSSASGGR : : :. : KIAA12 RGRGRGRKAEEAGGTRLEPLKPLKIKLSVPKAGEGLGTSSGDAISGTDHNSLDSSLTREK 390 400 410 420 430 440 >>FLJ00284 ( 366 res) sh02281 (366 aa) initn: 131 init1: 86 opt: 91 Z-score: 96.2 bits: 25.3 E(): 3.7 Smith-Waterman score: 91; 38.235% identity (55.882% similar) in 34 aa overlap (125-153:214-247) 100 110 120 130 140 FLJ003 ATSCTLGSSRPSGWGLPAGPKSALALLWPRRHWRSCTG-----CSRCWYQSRPRHHLQTL .: :. : ::.:: ::::.. FLJ002 NLVRHQRTHEEKSYGCVECGKGFTLREYLMKHQRTHLGKRPYVCSECWKTFSQRHHLEVH 190 200 210 220 230 240 150 160 170 FLJ003 QQHHLLLLQAPSSASGGRSRRRW :. : FLJ002 QRSHTGEKPYKCGDCWKSFSRRQHLQVHRRTHTGEKPYTCECGKSFSRNANLAVHRRAHT 250 260 270 280 290 300 >>FLJ00019 ( 732 res) as00019 (732 aa) initn: 89 init1: 89 opt: 92 Z-score: 95.6 bits: 26.2 E(): 4 Smith-Waterman score: 92; 35.849% identity (54.717% similar) in 53 aa overlap (88-139:231-283) 60 70 80 90 100 110 FLJ003 CHPGKEVNVRAGQRGPEEDVGRARLAPAAASNSPTHRATSCTLGSSRPSGWGLPAGPKSA ..:: :: . :. :: . : ..: .: FLJ000 AGAVPLLVESLTACQDSQCLQSVVRALRNLADSPQHRLALAQQGAVRPLAELLATAPDAA 210 220 230 240 250 260 120 130 140 150 160 170 FLJ003 LALLWPRRHWRSCTGCSR-CWYQSRPRHHLQTLQQHHLLLLQAPSSASGGRSRRRW :.: : . :::: : : FLJ000 LTLALVRALLELSRGCSRACAEQLSLGGGLGPLVSLASHPKRAVREGTILILANLCAQGL 270 280 290 300 310 320 >>KIAA1233 ( 1023 res) fh08611 (1023 aa) initn: 46 init1: 46 opt: 92 Z-score: 94.8 bits: 26.6 E(): 4.4 Smith-Waterman score: 92; 25.000% identity (48.611% similar) in 144 aa overlap (8-141:816-952) 10 20 30 FLJ003 RWSPEASPSCWLRA-WA--SNSCFIMSADFCSSCMTR :. :. . :. : :: . .: KIAA12 MANGQEVSEALCDHLQKPLAGFEPCNIRDCPARWFTSVWSQCSVSCGEGYHSRQVTCKRT 790 800 810 820 830 840 40 50 60 70 80 FLJ003 PLFSVTSWVRRRFCSFSIRIV----CCCHPGKEVNVRAGQRGPEEDVGRA-RLAPAAASN .... : : :. . : . : :: :. . :.: : . .::: :. .. KIAA12 KANGTVQVVSPRACAPKDRPLGRKPCFGHPC--VQWEPGNRCPGRCMGRAVRMQQRHTAC 850 860 870 880 890 900 90 100 110 120 130 140 FLJ003 SPTHRATSCTLGSSRPS-GWGLPAGPKSALALLWPRRHWRSCTG-CSRCWYQSRPRHHLQ . . ..: .::. . .: : . : :. ::. :.: .::: KIAA12 QHNSSDSNCD-DRKRPTLRRNCTSG---ACDVCWHTGPWKPCTAACGRG-FQSRKVDCIH 910 920 930 940 950 150 160 170 FLJ003 TLQQHHLLLLQAPSSASGGRSRRRW KIAA12 TRSCKPVAKRHCVQKKKPISWRHCLGPSCDRDCTDTTHYCMFVKHLNLCSLDRYKQRCCQ 960 970 980 990 1000 1010 >>KIAA2011 ( 1091 res) pj02017 (1091 aa) initn: 105 init1: 73 opt: 92 Z-score: 94.7 bits: 26.6 E(): 4.5 Smith-Waterman score: 92; 46.154% identity (64.103% similar) in 39 aa overlap (70-107:547-584) 40 50 60 70 80 90 FLJ003 TSWVRRRFCSFSIRIVCCCHPGKEVNVRAGQRGPEEDV-GRARLAPAAASNSPTHRATSC ::: ::.. .::.:::. :: : : KIAA20 APRPDPPAPAPLAPLEPDSGTSSAADGPWTQRGEEEEAEARAKLAPGREPPSPCHSEDSL 520 530 540 550 560 570 100 110 120 130 140 150 FLJ003 TLGSSRPSGWGLPAGPKSALALLWPRRHWRSCTGCSRCWYQSRPRHHLQTLQQHHLLLLQ ::.. : : KIAA20 GLGAA-PLGSEPPLSQLVSDSDSELDSTERLALGSTDTLSNGQKADLEAAQRLAKRLYRL 580 590 600 610 620 630 >>FLJ00281 ( 1495 res) sh01915 (1495 aa) initn: 84 init1: 56 opt: 92 Z-score: 94.0 bits: 26.9 E(): 4.9 Smith-Waterman score: 96; 26.812% identity (46.377% similar) in 138 aa overlap (3-126:1347-1477) 10 20 FLJ003 RWSPEASPSCWLRAWASNS------CF----- ::. :. : : : . :. FLJ002 SATSGAEKATTRRKASSTPSPKQRSKQAGSSPRPPPGLWYLATAPPAPAPPAFCLHLLGS 1320 1330 1340 1350 1360 1370 30 40 50 60 70 FLJ003 --IMSADFCSSCMTRPLFSVTS-WVRRRFCSFSIRIVCCCHPGKEVNVRAGQRGPEEDVG .:. : : : .: :: : . : . . ::.. :..:.::: : FLJ002 HHALSTCRCVLCACRTYLSPTSCQVAAHSLSPTSPETPALHPARPGRPRGAQQGPEP--G 1380 1390 1400 1410 1420 1430 80 90 100 110 120 130 FLJ003 RARLAPAAASNSPTHRATSCTLGSSRPSGWGLPAGPKSALALLWPRRHWRSCTGCSRCWY :: . . : .. .. :. :::. . ::: :. : .:. FLJ002 RA-----GCRERPLYHQADEKLAVSRPAPGSQPAGLLPLLTSLGAQRQMGGWVGRWPARP 1440 1450 1460 1470 1480 140 150 160 170 FLJ003 QSRPRHHLQTLQQHHLLLLQAPSSASGGRSRRRW FLJ002 GVGWSC 1490 >>KIAA0322 ( 1614 res) hg00462s1 (1614 aa) initn: 113 init1: 52 opt: 90 Z-score: 91.9 bits: 26.7 E(): 6.4 Smith-Waterman score: 90; 23.926% identity (46.012% similar) in 163 aa overlap (7-160:687-838) 10 20 30 FLJ003 RWSPEASPSCWLRAWASNSCFIMSADFCSSCMTRPL ::::. :.::. : . :::.. KIAA03 DTHPSTGSESDSSPRQGGDHSCEGCDASCCSPSCY-----SSSCYSTSC-YSSSCYSASC 660 670 680 690 700 710 40 50 60 70 80 90 FLJ003 FSVTSWVRRRFCSFSIRIVCCCHPGKEVNVRAGQRGPEEDVGRARLAPAAASNSPTHRAT .: . . :: : . .: .: ..: ::. . . .: . .. . KIAA03 YSPSCYNGNRFASHTRFSSVDSAKISESTVFSSQDDEEEENSAFESVPDSMQSPELDPES 720 730 740 750 760 770 100 110 120 130 140 FLJ003 SCTLGS-----SRPSGW--GLPAGPKSALALLWPRRHWRSCTGCSRCWYQSRPRHHLQTL . : . ::: : : .: .: ::. : ..:.: .: .: KIAA03 TNGAGPWQDELAAPSGHVERSPEGLESPVAGPSNRRE-----GECPILHNSQPVSQLPSL 780 790 800 810 820 150 160 170 FLJ003 --QQHHLLLLQAPSSASGGRSRRRW ..:: .. : KIAA03 RPEHHHYPTIDEPLPPNWEARIDSHGRVFYVDHVNRTTTWQRPTAAATPDGMRRSGSIQQ 830 840 850 860 870 880 >>KIAA0279 ( 2854 res) ff05612 (2854 aa) initn: 133 init1: 60 opt: 91 Z-score: 91.6 bits: 27.4 E(): 6.7 Smith-Waterman score: 91; 31.250% identity (62.500% similar) in 64 aa overlap (48-107:68-128) 20 30 40 50 60 70 FLJ003 NSCFIMSADFCSSCMTRPLFSVTSWVRRRFCSFSIRIVC-CCHPGKEVNVRAGQRGPEED : . :. : :. .. ..:::.:.:::. KIAA02 PEGCPWSCRLLGIGGHLSPQGKLTLPEEHPCLKAPRLRCQSCKLAQAPGLRAGERSPEES 40 50 60 70 80 90 80 90 100 110 120 130 FLJ003 VG--RAR-LAPAAASNSPTHRATSCTLGSSRPSGWGLPAGPKSALALLWPRRHWRSCTGC .: : : . : . :...:: . ..:.: KIAA02 LGGRRKRNVNTAPQFQPPSYQAT---VPENQPAGTPVASLRAIDPDEGEAGRLEYTMDAL 100 110 120 130 140 150 140 150 160 170 FLJ003 SRCWYQSRPRHHLQTLQQHHLLLLQAPSSASGGRSRRRW KIAA02 FDSRSNQFFSLDPVTGAVTTAEELDRETKSTHVFRVTAQDHGMPRRSALATLTILVTDTN 160 170 180 190 200 210 >>FLJ00072 ( 204 res) as00072 (204 aa) initn: 67 init1: 42 opt: 80 Z-score: 86.9 bits: 22.8 E(): 12 Smith-Waterman score: 80; 24.837% identity (46.405% similar) in 153 aa overlap (7-143:1-139) 10 20 30 40 50 FLJ003 RWSPEASPSCWLRAWASNSCFIMSADFCS------SCMTRPLFSVTSWVRRRFCSFSIRI ::.: :: .::. ... : .:. ... .. . : . FLJ000 SPQCK-RA----ACFLSAGSVGSEPGPSVQCLCTQIIACVT--EDSVLSCHLLP 10 20 30 40 60 70 80 90 100 FLJ003 VCCCHPGKEVNVRAGQRGPEEDV-----GRARLAPAAASNSPTHRATSCTLGSSRPSGWG :: ::. . . . :: ... ::.: .. . .: . . . .::: : FLJ000 SCCPVPGR-TRMPPSLSGPWQSLRPGSKGRGRGPLVGEGRGPPGVGPGNS--RARPS-W- 50 60 70 80 90 100 110 120 130 140 150 160 FLJ003 LPAGPKSALALLWPR-----RHWRSCTGCSRCWYQSRPRHHLQTLQQHHLLLLQAPSSAS :: :::: :: : . . ::: :: FLJ000 -VCWPK-ALALTPPRLPPPNRPASAALATRRCWCCRLPRALVPPGPGTSRPRRVGLGSWK 110 120 130 140 150 160 170 FLJ003 GGRSRRRW FLJ000 AGRGRRETGFPERDGVPQAQLAPPPPRFLPLPHALLLPPTPLLA 170 180 190 200 172 residues in 1 query sequences 2210822 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:44 2009 done: Fri Feb 27 11:02:45 2009 Total Scan time: 0.350 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]