# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj06436.fasta.huge -Q ../query/FLJ00397.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00397, 150 aa vs ./tmplib.10216 library 2210844 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 3.9090+/-0.00366; mu= 16.6313+/- 0.248 mean_var=73.8617+/-15.753, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.149233 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA0211 ( 1317 res) ha02768 (1317) 88 27.7 2.2 KIAA0383 ( 1781 res) hh00708s1 (1781) 89 28.1 2.2 KIAA1278 ( 1311 res) hg03689(revised) (1311) 87 27.5 2.5 KIAA1044 ( 646 res) fh03989 ( 646) 84 26.5 2.6 FLJ00406 ( 261 res) sj08464 ( 261) 77 24.4 4.3 KIAA1890 ( 1048 res) fk02692 (1048) 82 26.3 4.6 KIAA1884 ( 946 res) fh04567 ( 946) 79 25.6 6.8 KIAA0334 ( 848 res) hg01015 ( 848) 76 24.9 10 FLJ00420 ( 613 res) sj09535 ( 613) 74 24.3 11 FLJ00386 ( 811 res) sj04204 ( 811) 75 24.7 11 KIAA0691 ( 762 res) hk03735 ( 762) 74 24.4 13 FLJ00337 ( 288 res) sj05835 ( 288) 70 23.0 13 KIAA1269 ( 531 res) hk04070 ( 531) 72 23.8 14 KIAA1805 ( 534 res) fk00014 ( 534) 72 23.8 14 KIAA0989 ( 859 res) hk05377 ( 859) 73 24.3 16 KIAA0374 ( 584 res) hh00327 ( 584) 71 23.6 17 KIAA0856 ( 2237 res) bf00171 (2237) 76 25.5 18 FLJ00080 ( 716 res) as00080 ( 716) 70 23.5 22 KIAA0092 ( 475 res) ha01343 ( 475) 68 22.8 24 KIAA0579 ( 910 res) bg00015 ( 910) 70 23.6 25 KIAA0893 ( 974 res) hk08702 ( 974) 70 23.7 26 KIAA0015 ( 480 res) ha00478 ( 480) 67 22.6 27 KIAA0210 ( 801 res) ha02313 ( 801) 69 23.4 27 KIAA0337 ( 1609 res) hg01226 (1609) 71 24.2 30 KIAA0147 ( 1630 res) ha01022s1 (1630) 71 24.2 31 KIAA1978 ( 384 res) fj03313 ( 384) 65 22.1 32 KIAA0908 ( 506 res) hk10449 ( 506) 66 22.4 33 KIAA1676 ( 735 res) fh07095 ( 735) 67 22.9 35 KIAA0063 ( 211 res) ha01234 ( 211) 62 21.0 36 KIAA1716 ( 804 res) hj06603 ( 804) 67 22.9 37 KIAA0471 ( 413 res) hg03220 ( 413) 64 21.9 39 KIAA2038 ( 917 res) pj01991 ( 917) 67 23.0 40 KIAA0694 ( 595 res) hk03987s1 ( 595) 65 22.3 42 FLJ00258 ( 792 res) sj09927 ( 792) 66 22.7 42 KIAA1041 ( 642 res) fh02801 ( 642) 65 22.4 44 KIAA0239 ( 849 res) ha06313 ( 849) 66 22.7 44 FLJ00075 ( 183 res) as00075 ( 183) 60 20.5 44 FLJ00398 ( 660 res) sj06617 ( 660) 65 22.4 44 FLJ00146 ( 522 res) sh05065 ( 522) 64 22.0 45 KIAA1857 ( 549 res) fk03350 ( 549) 64 22.1 46 KIAA1237 ( 1268 res) fh09696s1 (1268) 67 23.2 48 KIAA0040 ( 164 res) ha01160 ( 164) 59 20.2 48 FLJ00348 ( 778 res) sg00015 ( 778) 65 22.5 49 KIAA1426 ( 1066 res) fg04231s1 (1066) 66 22.9 50 KIAA1894 ( 2977 res) ff08107 (2977) 70 24.4 50 KIAA1007 ( 1835 res) bg00162 (1835) 68 23.6 51 FLJ00198 ( 677 res) sj03504 ( 677) 64 22.2 52 KIAA1312 ( 1471 res) fh11767 (1471) 67 23.3 52 KIAA1193 ( 544 res) fg00739 ( 544) 63 21.8 53 KIAA0802 ( 1578 res) hh07536 (1578) 67 23.3 54 >>KIAA0211 ( 1317 res) ha02768 (1317 aa) initn: 109 init1: 47 opt: 88 Z-score: 100.4 bits: 27.7 E(): 2.2 Smith-Waterman score: 88; 25.962% identity (52.885% similar) in 104 aa overlap (49-150:910-1008) 20 30 40 50 60 70 FLJ003 RKSGRYSGFPKKQWKRRSLDEETVQQEEGLLTLSCACGSPEDPVK-IQILIQWVCVEPET : .:.: . . :: . . .. KIAA02 AFCPMAFKTASSTADHSATQHPTQPHRPSQLIYKCSCEMVFNKKRHIQQHFYQNVSKTQV 880 890 900 910 920 930 80 90 100 110 120 130 FLJ003 AILTCSQGMLMLLALGLHCMHVKPYRSQQRPMERECVALAAQGPTRFTRIVLLPGQPLAT ... : . :... .::: .. : .. : : ... : .: ::. . : KIAA02 GVFKCPECPLLFVQKPELMQHVKSTHGVPRNVD-ELSNLQSSADTSSSR----PGSRVPT 940 950 960 970 980 990 140 150 FLJ003 APPA-AVAERASSL ::: .:: :.::: KIAA02 EPPATSVAARSSSLPSGRWGRPEAHRRVEARPRLRNTGWTCQECQEWVPDRESYVSHMKK 1000 1010 1020 1030 1040 1050 >>KIAA0383 ( 1781 res) hh00708s1 (1781 aa) initn: 55 init1: 55 opt: 89 Z-score: 100.2 bits: 28.1 E(): 2.2 Smith-Waterman score: 89; 31.481% identity (64.815% similar) in 54 aa overlap (13-66:330-380) 10 20 30 40 FLJ003 MRKKTVGNQTGIKSSALPRKSGRYSGFPKKQWKRRSLDEETV :.. . :. .. : ::.. :.: : .: KIAA03 CDPPLSRMPKGMWICQVCRPKKKGRKLLHEKAAQIKRRYAKPIGRPKNKLKQRLL---SV 300 310 320 330 340 350 50 60 70 80 90 100 FLJ003 QQEEGLLTLSCACGSPEDPVKIQILIQWVCVEPETAILTCSQGMLMLLALGLHCMHVKPY ..:: .. . :::. .::.: KIAA03 TSDEGSMNAFTGRGSPDTEIKINIKQESADVNVIGNKDVVTEEDLDVFKQAQELSWEKIE 360 370 380 390 400 410 >>KIAA1278 ( 1311 res) hg03689(revised) (1311 aa) initn: 67 init1: 67 opt: 87 Z-score: 99.2 bits: 27.5 E(): 2.5 Smith-Waterman score: 87; 31.765% identity (48.235% similar) in 85 aa overlap (37-116:1220-1301) 10 20 30 40 50 60 FLJ003 GNQTGIKSSALPRKSGRYSGFPKKQWKRRSLDEETVQQEEGLLTLSCACGSPEDPVKIQI : :: .: : : :::.:. :: KIAA12 VPSMTQLLGDPQAGIRRNVASALGNLGPEGLGEELLQCEVPQRLLEMACGDPQPNVKEAA 1190 1200 1210 1220 1230 1240 70 80 90 100 110 120 FLJ003 LIQWVCVEPETAI--LTCSQGM---LMLLALGLHCMHVKPYRSQQRPMERECVALAAQGP :: .. : .: . : : : ::.:: . . :. : . ..: : KIAA12 LIALRSLQQEPGIHQVLVSLGASEKLSLLSLGNQSL---PHSSPRPASAKHCRKLIHLLR 1250 1260 1270 1280 1290 1300 130 140 150 FLJ003 TRFTRIVLLPGQPLATAPPAAVAERASSL KIAA12 PAHSM 1310 >>KIAA1044 ( 646 res) fh03989 (646 aa) initn: 63 init1: 40 opt: 84 Z-score: 99.0 bits: 26.5 E(): 2.6 Smith-Waterman score: 84; 26.866% identity (53.731% similar) in 67 aa overlap (75-137:557-623) 50 60 70 80 90 100 FLJ003 EEGLLTLSCACGSPEDPVKIQILIQWVCVEPETAILTCSQGMLMLLA-LGLHCMHVKPY- :.. . :: .. :. . ..:.. : KIAA10 RPSSHSPSLSSQQGVTSTCCSRRHKKTFRIPNANVSGSHQGSIQELSTIQIRCVERTPLS 530 540 550 560 570 580 110 120 130 140 150 FLJ003 --RSQQRPMERECVALAAQGPTRFTRIVLLPGQPLATAPPAAVAERASSL ::. .::: : . : : :. .: :..: KIAA10 NSRSSLNAKMEECVKLNCEQPYVTTAIISIPTPPVTTPEGDDRPESPEYSGGNIVRVSAL 590 600 610 620 630 640 >>FLJ00406 ( 261 res) sj08464 (261 aa) initn: 35 init1: 35 opt: 77 Z-score: 94.9 bits: 24.4 E(): 4.3 Smith-Waterman score: 77; 31.522% identity (47.826% similar) in 92 aa overlap (56-145:145-225) 30 40 50 60 70 80 FLJ003 GFPKKQWKRRSLDEETVQQEEGLLTLSCACGSPEDPVKIQILIQWVCVEPETAILTCSQG : :: . : :. . : . . : FLJ004 PEPVHRPQDPWHIPGVPEPVHRPQDPWHIPGVPEPVHRPQDPWPWLQLVPPAELAYC--- 120 130 140 150 160 170 90 100 110 120 130 140 FLJ003 MLMLLALGLHCMHVKPYRSQQRPMERECVA-LAAQGPTRFTRIVLLPGQPL-ATAPPAAV .:::: :::. . .. ..:: : :.: : . :: : ::: : : FLJ004 LLMLLLA--HCMKQQARPGHPDFLHREAWACLSAAGG------LASPGLLLWATARPRAS 180 190 200 210 220 150 FLJ003 AERASSL .: FLJ004 GEAGPGRALVGADAACCPRHSVLSLVDIPSGQVLPQGQ 230 240 250 260 >>KIAA1890 ( 1048 res) fk02692 (1048 aa) initn: 59 init1: 59 opt: 82 Z-score: 94.4 bits: 26.3 E(): 4.6 Smith-Waterman score: 82; 28.302% identity (50.943% similar) in 53 aa overlap (82-134:803-855) 60 70 80 90 100 110 FLJ003 SCACGSPEDPVKIQILIQWVCVEPETAILTCSQGMLMLLALGLHCMHVKPYRSQQRPMER :. :.:. . .:::. : .: KIAA18 SDTQCSSVPEPRYGRRIGSEFSAGSIVRFECNPGYLLQGSTALHCQSVPNALAQWNDTIP 780 790 800 810 820 830 120 130 140 150 FLJ003 ECVALAAQGPTRFTRIVLLPGQPLATAPPAAVAERASSL ::. . . :. .: :: : KIAA18 SCVVPCSGNFTQRRGTILSPGYPEPYGNNLNCIWKIIVTEGSGIQIQVISFATEQNWDSL 840 850 860 870 880 890 >>KIAA1884 ( 946 res) fh04567 (946 aa) initn: 72 init1: 72 opt: 79 Z-score: 91.4 bits: 25.6 E(): 6.8 Smith-Waterman score: 79; 22.785% identity (49.367% similar) in 79 aa overlap (43-121:344-414) 20 30 40 50 60 70 FLJ003 KSSALPRKSGRYSGFPKKQWKRRSLDEETVQQEEGLLTLSCACGSPEDPVKIQILIQWVC : : :... ::.: : . ..... KIAA18 TVMRFSCEAGHVLRGSSERTCQANGSWSGSQPECGVIS----CGNPGTPSNARVVFSDGL 320 330 340 350 360 80 90 100 110 120 130 FLJ003 VEPETAILTCSQGMLMLLALGLHCMHVKPYRSQQRPMERECVALAAQGPTRFTRIVLLPG : . . : .:. :. :: :. . . : ::... : KIAA18 VFSSSIVYECREGYYATGLLSRHC-SVNGTWTGSDP---ECLVINCGDPGIPANGLRLGN 370 380 390 400 410 420 140 150 FLJ003 QPLATAPPAAVAERASSL KIAA18 DFRYNKTVTYQCVPGYMMESHRVSVLSCTKDRTWNGTKPVCKALMCKPPPLIPNGKVVGS 430 440 450 460 470 480 >>KIAA0334 ( 848 res) hg01015 (848 aa) initn: 35 init1: 35 opt: 76 Z-score: 88.4 bits: 24.9 E(): 10 Smith-Waterman score: 76; 22.464% identity (52.899% similar) in 138 aa overlap (1-134:669-798) 10 20 FLJ003 MRKKTVGNQTGIKSSALPR---KSGRYSGF . . ..:... : :: .:. .:. . : KIAA03 QNVLSGHSQQTSLPSQTQSTLTAPLYNTMVISQPAAGSMVQIPSS-MPQNSTQSAAVTTF 640 650 660 670 680 690 30 40 50 60 70 80 FLJ003 PKKQWKRRSLDEETVQQEEGLLTLSCACGSPEDPVKIQILIQWVCVEPETAILTCSQGML . . : : .. : . :.: :::. : . ... : : . : : .: . KIAA03 TQDRQIRFSQGQQLVTK---LVTAPVACGAVMVP-STMLMGQVVTAYPTFAT---QQQQS 700 710 720 730 740 750 90 100 110 120 130 140 FLJ003 MLLALGLHCMHVKPYRSQQRPMERECVALAAQGPTRFTRIV-LLPGQPLATAPPAAVAER . :.. . .. . ..: ... : .: : .: . :: :.: KIAA03 QTLSVTQQQQQQSSQEQQLTSVQQPSQAQLTQPPQQFLQTSRLLHGNPSTQLILSAAFPL 760 770 780 790 800 810 150 FLJ003 ASSL KIAA03 QQSTFPQSHHQQHQSQQQQQLSRHRTDSLPDPSKVQPQ 820 830 840 >>FLJ00420 ( 613 res) sj09535 (613 aa) initn: 83 init1: 56 opt: 74 Z-score: 87.6 bits: 24.3 E(): 11 Smith-Waterman score: 74; 30.189% identity (54.717% similar) in 53 aa overlap (100-148:230-282) 70 80 90 100 110 120 FLJ003 WVCVEPETAILTCSQGMLMLLALGLHCMHVKPYRSQQRPMERECVALAAQGPT-RFTRIV :: .:.:.:. .:: . . FLJ004 NCTTENSEDDKKRGRSTDSEVSQSPAKNGSKPVHSNQHPQSPAVPPTYPSGPPPAASALS 200 210 220 230 240 250 130 140 150 FLJ003 LLPGQ---PLATAPPAAVAERASSL ::. : .:::.:.. .:: FLJ004 TTPGNNGVPAPAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQP 260 270 280 290 300 310 >>FLJ00386 ( 811 res) sj04204 (811 aa) initn: 82 init1: 54 opt: 75 Z-score: 87.4 bits: 24.7 E(): 11 Smith-Waterman score: 75; 30.645% identity (51.613% similar) in 62 aa overlap (83-140:306-367) 60 70 80 90 100 110 FLJ003 CACGSPEDPVKIQILIQWVCVEPETAILTCSQGMLMLLALGLHCMHVKPYRSQQRP--ME ::.. . : : .: .: . :.: . FLJ003 QQQQQQQQQQALQAQPPIQQPPMQQPQPPPSQALPQQLQQMHHTQHHQPPPQPQQPPVAQ 280 290 300 310 320 330 120 130 140 150 FLJ003 RECVALAAQGPTR--FTRIVLLPGQPLATAPPAAVAERASSL . : :. :. .. :::: : : :: FLJ003 NQPSQLPPQSQTQPLVSQAQALPGQMLYTQPPLKFVRAPMVVQQPPVQPQVQQQQTAVQT 340 350 360 370 380 390 FLJ003 AQAAQMVAPGVQMITEALAQGGMHIRARFPPTTAVSAIPSSSIPLGRQPMAQVSQSSLPM 400 410 420 430 440 450 150 residues in 1 query sequences 2210844 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 11:02:45 2009 done: Fri Feb 27 11:02:45 2009 Total Scan time: 0.330 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]