# /usr/local/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/sj06436.fasta.nr -Q ../query/FLJ00397.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00397, 150 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7827444 sequences Expectation_n fit: rho(ln(x))= 4.3944+/-0.00018; mu= 10.3526+/- 0.010 mean_var=58.0977+/-11.119, 0's: 45 Z-trim: 47 B-trim: 0 in 0/67 Lambda= 0.168265 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|21748638|dbj|BAC03456.1| FLJ00397 protein [Homo ( 150) 1011 252.9 1.3e-65 gi|114560387|ref|XP_001168110.1| PREDICTED: simila ( 150) 970 242.9 1.3e-62 >>gi|21748638|dbj|BAC03456.1| FLJ00397 protein [Homo sap (150 aa) initn: 1011 init1: 1011 opt: 1011 Z-score: 1333.9 bits: 252.9 E(): 1.3e-65 Smith-Waterman score: 1011; 100.000% identity (100.000% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 FLJ003 MRKKTVGNQTGIKSSALPRKSGRYSGFPKKQWKRRSLDEETVQQEEGLLTLSCACGSPED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 MRKKTVGNQTGIKSSALPRKSGRYSGFPKKQWKRRSLDEETVQQEEGLLTLSCACGSPED 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 PVKIQILIQWVCVEPETAILTCSQGMLMLLALGLHCMHVKPYRSQQRPMERECVALAAQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 PVKIQILIQWVCVEPETAILTCSQGMLMLLALGLHCMHVKPYRSQQRPMERECVALAAQG 70 80 90 100 110 120 130 140 150 FLJ003 PTRFTRIVLLPGQPLATAPPAAVAERASSL :::::::::::::::::::::::::::::: gi|217 PTRFTRIVLLPGQPLATAPPAAVAERASSL 130 140 150 >>gi|114560387|ref|XP_001168110.1| PREDICTED: similar to (150 aa) initn: 970 init1: 970 opt: 970 Z-score: 1280.1 bits: 242.9 E(): 1.3e-62 Smith-Waterman score: 970; 95.333% identity (98.667% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 FLJ003 MRKKTVGNQTGIKSSALPRKSGRYSGFPKKQWKRRSLDEETVQQEEGLLTLSCACGSPED :::::::::::::::::::::::::::::::::::.:::::::::::::::::.:::::: gi|114 MRKKTVGNQTGIKSSALPRKSGRYSGFPKKQWKRRNLDEETVQQEEGLLTLSCVCGSPED 10 20 30 40 50 60 70 80 90 100 110 120 FLJ003 PVKIQILIQWVCVEPETAILTCSQGMLMLLALGLHCMHVKPYRSQQRPMERECVALAAQG ::::::::::::::::::::::::::::::.:: :::::.: :::::::::.:::::::: gi|114 PVKIQILIQWVCVEPETAILTCSQGMLMLLVLGPHCMHVRPCRSQQRPMERQCVALAAQG 70 80 90 100 110 120 130 140 150 FLJ003 PTRFTRIVLLPGQPLATAPPAAVAERASSL :::::::::::::::::::::::::::::: gi|114 PTRFTRIVLLPGQPLATAPPAAVAERASSL 130 140 150 150 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (2 proc) start: Sat Feb 28 01:09:59 2009 done: Sat Feb 28 01:14:02 2009 Total Scan time: 586.350 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]