# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj06463.fasta.huge -Q ../query/FLJ00228.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00228, 393 aa vs ./tmplib.10216 library 2210601 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.0872+/-0.00443; mu= 20.9952+/- 0.299 mean_var=108.5701+/-23.417, 0's: 0 Z-trim: 0 B-trim: 0 in 0/40 Lambda= 0.123089 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) FLJ00268 ( 695 res) sj05723 ( 695) 106 29.2 1.1 KIAA1509 ( 1365 res) fh14721 (1365) 102 29.0 2.4 KIAA0236 ( 1696 res) ha04654 (1696) 100 28.8 3.5 KIAA0708 ( 1753 res) hh01062b(revised) (1753) 98 28.5 4.5 KIAA1139 ( 1124 res) hk00330 (1124) 96 27.8 4.6 KIAA1549 ( 1865 res) fh16155s1 (1865) 97 28.3 5.3 FLJ00290 ( 150 res) sh02878 ( 150) 83 24.1 8.3 FLJ00091 ( 170 res) as00091 ( 170) 83 24.1 8.9 KIAA1886 ( 655 res) fk01837 ( 655) 88 26.0 9.4 KIAA1717 ( 420 res) pf00208 ( 420) 86 25.3 9.6 KIAA0789 ( 620 res) pj01253 ( 620) 87 25.8 10 KIAA1771 ( 1302 res) pj02581(revised) (1302) 90 26.8 10 KIAA1272 ( 1023 res) hk07611 (1023) 89 26.5 10 KIAA0616 ( 634 res) hg03623 ( 634) 84 25.3 15 KIAA0285 ( 658 res) hh10127a ( 658) 84 25.3 15 FLJ00056 ( 1310 res) as00056 (1310) 86 26.1 17 KIAA1683 ( 832 res) fh24307 ( 832) 84 25.5 17 KIAA1931 ( 514 res) fj14393 ( 514) 82 24.8 17 KIAA1086 ( 902 res) hj08218 ( 902) 84 25.5 18 KIAA1461 ( 1498 res) fh17578 (1498) 86 26.2 18 KIAA0404 ( 1956 res) hg01236 (1956) 87 26.6 19 FLJ00128 ( 1546 res) sh01521 (1546) 86 26.3 19 KIAA0665 ( 760 res) hk02064 ( 760) 83 25.2 19 FLJ00311 ( 249 res) sh06450 ( 249) 78 23.5 20 KIAA1120 ( 1024 res) hg02941 (1024) 83 25.4 22 KIAA1278 ( 1311 res) hg03689(revised) (1311) 84 25.8 22 KIAA0683 ( 844 res) fk02589 ( 844) 82 25.1 22 KIAA0189 ( 1132 res) ha02928 (1132) 83 25.5 23 KIAA1085 ( 584 res) hj07690 ( 584) 80 24.5 24 FLJ00259 ( 659 res) sh04102 ( 659) 80 24.6 25 KIAA1986 ( 334 res) pg00636 ( 334) 77 23.6 26 KIAA0821 ( 1566 res) hh02631 (1566) 83 25.7 27 KIAA0194 ( 1435 res) ha02703 (1435) 82 25.5 29 KIAA1564 ( 2432 res) fh20840s1 (2432) 84 26.2 30 KIAA1083 ( 584 res) hj07423 ( 584) 78 24.1 30 KIAA0156 ( 963 res) ha03253 ( 963) 80 24.9 30 KIAA1963 ( 488 res) ph00179 ( 488) 77 23.8 31 KIAA0600 ( 1080 res) fh08981 (1080) 80 24.9 32 KIAA1614 ( 1208 res) fj12973 (1208) 80 25.0 34 KIAA0918 ( 966 res) hk09360(revised) ( 966) 79 24.7 34 KIAA1892 ( 476 res) fk04164 ( 476) 76 23.6 35 KIAA0080 ( 486 res) hh13320 ( 486) 76 23.7 35 FLJ00275 ( 382 res) sh00566 ( 382) 75 23.3 35 KIAA1366 ( 550 res) fj02695 ( 550) 76 23.7 38 FLJ00054 ( 104 res) as00054 ( 104) 69 21.3 38 KIAA0039 ( 491 res) ha02030 ( 491) 75 23.5 40 KIAA0516 ( 1382 res) hg00484s2 (1382) 79 24.9 41 FLJ00375 ( 708 res) sh07824 ( 708) 76 23.9 43 KIAA0047 ( 268 res) ha01551 ( 268) 72 22.5 43 KIAA0222 ( 1204 res) ha02586 (1204) 78 24.7 43 >>FLJ00268 ( 695 res) sj05723 (695 aa) initn: 126 init1: 63 opt: 106 Z-score: 105.9 bits: 29.2 E(): 1.1 Smith-Waterman score: 111; 26.389% identity (48.611% similar) in 216 aa overlap (95-298:73-268) 70 80 90 100 110 120 FLJ002 VTNAYLGTRVFHDTLHVSGVYNGAGGDTHRAMLPSPLNVRLEAPAGMGEQLTETFALDTN :.. .: ..:. : : ::.: : FLJ002 GRLEVTWGTVCDAALDLATAHVVCRELQCGAVVSTPEGARF--GRGSGPVWTEAFRCAGN 50 60 70 80 90 100 130 140 150 160 170 180 FLJ002 TGSFLHTLEGPRFRASQCIYAHRTLPHVLAFRVSIARLAPGS----GPITLLLRSAFSPE . ..: :: :.::: ..: . ..: : :.. :: : . . ......: FLJ002 ESLLFHC---PRGRGSQCGHGHDA-----GLRCSEFRMVNGSSSCEGRVEFQVQGSWAPL 110 120 130 140 150 190 200 210 220 230 FLJ002 SPDLDLHQGPDFQGARYLYGHTLTPEQ----PGGPQ--QEVHMLWTPAPPDLTLGEGEEA : :. : : : :. . ::: . . .: :: :: :. FLJ002 CAT---HW--DIADATVLC-HQLNCGNAVAVPGGGHFGDGDAAIW----PDAFHCEGTES 160 170 180 190 200 240 250 260 270 280 290 FLJ002 RTWDFLTAVGGSQAEAQACLTEALQLQARGALYTAHAQAWAQLWVECGLDVVGPLQLRQA :. ... :. : : . . :. :: ..:. . :: .:: : : .: FLJ002 YLWNCPVSTLGAPACAPGNTASAVCSGLAHALRLREGQSRCDGRVEVSLDGVWGRVLDDA 210 220 230 240 250 260 300 310 320 330 340 350 FLJ002 --LRGSLYYLLSALPQPKAPGYICHGLSPGGLSNGSREECYWGHVFWDQVSTVHPAPATQ :::. FLJ002 WDLRGAGVVCRQLGCRGAQQAYDAPAPSRGSVQVALSRVRCLGTETRLTQCNVSATLQEP 270 280 290 300 310 320 >>KIAA1509 ( 1365 res) fh14721 (1365 aa) initn: 121 init1: 70 opt: 102 Z-score: 99.4 bits: 29.0 E(): 2.4 Smith-Waterman score: 102; 25.339% identity (44.796% similar) in 221 aa overlap (16-224:983-1188) 10 20 30 40 FLJ002 LVARQPGGSSFLPALAWSRGTQVPTLAPGDRVGLRPSSSMEDAG- : .::: : ::.:: :. .. KIAA15 LPREASTPGRNALGRHEYPLPRNGPLPQEGAQKRGTAPP------YVGVRPCSASPSSEM 960 970 980 990 1000 50 60 70 80 90 FLJ002 ---EDPTTFAAHSLPSD--PRLLATVTNAYLGTRVFHDTLHVSGVYNGAGGDTHRAMLPS :. . .: :. : . . :. : : ..: : . . : .:. KIAA15 VTLEEFLEESNRSSPTHDTPSCRDDLLSDYF--RKASDPPAIGG-QPGPPAKKEGAKMPT 1010 1020 1030 1040 1050 1060 100 110 120 130 140 150 FLJ002 PL---NVRLEAPAGMGEQLTETFALDTNTGSFLHTLEGPRFRASQCIYAHRTLPHVLAFR . .:.. ::.. :. : . : : :.: : . ..: . KIAA15 NFVAPTVKMAAPTSEGRPLKPGQYVKPNFR--LTEAEAPPSVAPRQAQPPQSLSLGRPRQ 1070 1080 1090 1100 1110 1120 160 170 180 190 200 210 FLJ002 VSI--ARLAPGSGPITLLLRSAFSPESPDLDLHQGPDFQGARYLYGHTL-TPEQPGGPQQ . . : ::.: .: ::: : :: .::. . . . : .:: :: . KIAA15 APVPPASHAPASRSASL--SRAFSLASADLLRASGPE--ACKQESPQKLGAPEALGGRET 1130 1140 1150 1160 1170 220 230 240 250 260 270 FLJ002 EVHMLWTPAPPDLTLGEGEEARTWDFLTAVGGSQAEAQACLTEALQLQARGALYTAHAQA : : .:::: KIAA15 GSHTLQSPAPPSSHSLARERTPLVGKAGSSCQGPGPRSRPLDTRRFSLAPPKEERLAPLH 1180 1190 1200 1210 1220 1230 >>KIAA0236 ( 1696 res) ha04654 (1696 aa) initn: 68 init1: 43 opt: 100 Z-score: 96.7 bits: 28.8 E(): 3.5 Smith-Waterman score: 106; 26.131% identity (47.236% similar) in 199 aa overlap (6-188:975-1163) 10 20 30 FLJ002 LVARQPGGSSFLPALAWSRGTQVPTLAPGDRVGLR :.:.: ::. : .. :. :. KIAA02 LLPKDAPLELPREPEETEEPLATVSGSPVPPAGNS-LPTEAPKKHCFDPVPPAGNS---S 950 960 970 980 990 1000 40 50 60 70 80 FLJ002 PSSSMEDAGEDPTTFAAHSLPSDP----RL----LATVTNAYLGTRVFHDTLHVS-GVYN :. . . ::. :..: :.. :. . . .: .:. : ::. : . KIAA02 PTEAPKKHHLDPVPPAGNSSPTEALKKHRFEQGKFHCNSCPFLCSRLSSITSHVAEGCRG 1010 1020 1030 1040 1050 1060 90 100 110 120 130 140 FLJ002 GAGGDTHRAM---LP--SPLNVRLEAPAGMGEQLTETFALDTNTGSFLHTLEGPRFRASQ : :: .:. : :::. :: : ::. . : .: ... .: :: KIAA02 GRGGGGKRGTPQTQPDVSPLSNGDSAPPKNGS--TESSSGDGDT-VLVQKQKGARFSCPT 1070 1080 1090 1100 1110 150 160 170 180 190 FLJ002 CIYAHRTLPHVLAFRVSIARLAP--GSGPITLLLRSAFSPESPDLDLHQGPDFQGARYLY : .. . . :.:. : : :: . : .: . : ::: KIAA02 CPFSCQ---QERALRTHQIRGCPLEESGELHCSLCPFTAPAATALRLHQKRRHPTAAPAR 1120 1130 1140 1150 1160 1170 200 210 220 230 240 250 FLJ002 GHTLTPEQPGGPQQEVHMLWTPAPPDLTLGEGEEARTWDFLTAVGGSQAEAQACLTEALQ KIAA02 GPRPHLQCGDCGFTCKQSRCMQQHRRLKHEGVKPHQCPFCDFSTTRRYRLEAHQSRHTGI 1180 1190 1200 1210 1220 1230 >>KIAA0708 ( 1753 res) hh01062b(revised) (1753 aa) initn: 85 init1: 56 opt: 98 Z-score: 94.6 bits: 28.5 E(): 4.5 Smith-Waterman score: 100; 28.877% identity (48.128% similar) in 187 aa overlap (157-318:1024-1198) 130 140 150 160 170 180 FLJ002 SFLHTLEGPRFRASQCIYAHRTLPHVLAFRVSIARLAPGSGPITLLLRSAFSPESPD--- ::. : : :: .:. : . KIAA07 GRAELQFGKQILHVSTVQMWLLLKFNQTEEVSVETLLKDSDLSPELLLQALVPLTSGNGP 1000 1010 1020 1030 1040 1050 190 200 210 220 230 FLJ002 LDLHQGPDFQGARYLYGHTLTPEQPGGPQQEVHMLWTPAPPDLTLG-EGEEARTWD---- : ::.: :: .: .: ..:: ::. . :: ::. :. : .:.:: . KIAA07 LTLHEGQDFP-----HGGVLRLHEPG-PQRSGEALWL-IPPQAYLNVEKDEGRTLEQKRN 1060 1070 1080 1090 1100 240 250 260 270 280 FLJ002 --------FLTAVG--GSQAEAQACLT-EALQLQAR--GALYTAHAQAWAQLWVE---CG .: : : : . . .::. :: : :.: . : . : .. : KIAA07 LLSCLLVRILKAHGEKGLHIDQLVCLVLEAWQKGPNPPGTLGHTVAGGVACTSTDVLSCI 1110 1120 1130 1140 1150 1160 290 300 310 320 330 340 FLJ002 LDVVGPLQL-RQALRGSLYYLLSALPQPKAPGYICHGLSPGGLSNGSREECYWGHVFWDQ : ..: . :. : .. :. : :.: .: :.: KIAA07 LHLLGQGYVKRRDDRPQI--LMYAAPEPMGP---CRGQADVPFCGSQSETSKPSPEAVAT 1170 1180 1190 1200 1210 1220 350 360 370 380 390 FLJ002 VSTVHPAPATQQATHGGPRSLPSLGPGLWLGKHRDCGKREEAWKVCRSLVEE KIAA07 LASLQLPAGRTMSPQEVEGLMKQTVRQVQETLNLEPDVAQHLLAHSHWGAEQLLQSYSED 1230 1240 1250 1260 1270 1280 >>KIAA1139 ( 1124 res) hk00330 (1124 aa) initn: 144 init1: 55 opt: 96 Z-score: 94.4 bits: 27.8 E(): 4.6 Smith-Waterman score: 102; 31.868% identity (48.352% similar) in 91 aa overlap (147-232:652-736) 120 130 140 150 160 170 FLJ002 ETFALDTNTGSFLHTLEGPRFRASQCIYAHRTLPHVLAFRVSIARLAPGSGPIT-LLLRS :.::. .. ::.:: ... KIAA11 SIGARSRGSGHSQEQPAPQPSGGDPSPPQERNLPEGTERPPKLCSSLPGQGPPPYVFMYP 630 640 650 660 670 680 180 190 200 210 220 230 FLJ002 AFSPESPDLDLHQGPDFQGA----RYLYGHTLTPEQPGGPQQEVHMLWTPAPPDLTLGEG :: :: :: :: :: : :: .: :... : : :.: . .:: KIAA11 QGSPSSPA----PGPP-PGAPWAFSYLAGPPATPPDPPRPKRRSHSLSRPGPTEGD-AEG 690 700 710 720 730 240 250 260 270 280 290 FLJ002 EEARTWDFLTAVGGSQAEAQACLTEALQLQARGALYTAHAQAWAQLWVECGLDVVGPLQL : KIAA11 EAEGPVGSTLGSYATLTRRPGRSALVRTSPSVTPTPARGTPRSQSFALRARRKGPPPPPP 740 750 760 770 780 790 >>KIAA1549 ( 1865 res) fh16155s1 (1865 aa) initn: 106 init1: 53 opt: 97 Z-score: 93.4 bits: 28.3 E(): 5.3 Smith-Waterman score: 97; 27.778% identity (54.444% similar) in 90 aa overlap (290-369:1616-1703) 260 270 280 290 300 310 FLJ002 LQARGALYTAHAQAWAQLWVECGLDVVGPLQLRQALRGSLYYLLSALPQPKAPGYICHGL : ..: . . :.. :: . . . :. KIAA15 PSSVELGRYPALPFPASQYIPPQPSIEEARQTMHSLLDDAFALVAPSSQPASTAGVGPGV 1590 1600 1610 1620 1630 1640 320 330 340 350 360 FLJ002 SPGGLSNG--SREE---CYWGHVFWDQVSTVHPAPATQQATHG-----GPRSLPSLGPGL :: .:. :.:: :: :.. ..:.. : .. .: :: :..:::: KIAA15 PPGLPANSTPSQEERRATQWGS-FYSPAQTAN-NPCSRYEDYGMTPPTGPLPRPGFGPGL 1650 1660 1670 1680 1690 1700 370 380 390 FLJ002 WLGKHRDCGKREEAWKVCRSLVEE KIAA15 LQSTELVPPDPQQPQASAEAPFAARGIYSEEMPSVARPRPVGGTTGSQIQHLTQVGIASR 1710 1720 1730 1740 1750 1760 >>FLJ00290 ( 150 res) sh02878 (150 aa) initn: 43 init1: 43 opt: 83 Z-score: 89.9 bits: 24.1 E(): 8.3 Smith-Waterman score: 83; 40.000% identity (76.667% similar) in 30 aa overlap (73-99:92-121) 50 60 70 80 90 FLJ002 AGEDPTTFAAHSLPSDPRLLATVTNAYLGTRVFHDTLHVSGVYNGAGGD---THRAMLPS :.: :...:...: ::: .::...:: FLJ002 QQGSWERGLVCLSIGGAEETFMKASEREAGRIFTPGLQLQGLHEGMGGDEGKAHRVLFPS 70 80 90 100 110 120 100 110 120 130 140 150 FLJ002 PLNVRLEAPAGMGEQLTETFALDTNTGSFLHTLEGPRFRASQCIYAHRTLPHVLAFRVSI FLJ002 HRPPLALLCVANPHPEADFRMLRKAALSL 130 140 150 >>FLJ00091 ( 170 res) as00091 (170 aa) initn: 115 init1: 54 opt: 83 Z-score: 89.4 bits: 24.1 E(): 8.9 Smith-Waterman score: 83; 27.500% identity (41.250% similar) in 80 aa overlap (307-377:58-133) 280 290 300 310 320 330 FLJ002 LWVECGLDVVGPLQLRQALRGSLYYLLSALPQPKAPGYICHGLSPGGLS---NGSREECY : : :: .:::.: .:... FLJ000 TSCDENRGTGAGPAAPRTRTGGGHGAPDPGPALGAADPACHCRDPGGVSTSSDGGHRALV 30 40 50 60 70 80 340 350 360 370 380 FLJ002 WGHVFWDQVSTVH-PAPATQQATHGGPR-----SLPSLGPGLWLGKHRDCGKREEAWKVC : .: .: :. : :::: ..:: : : FLJ000 LHHPLWVPGVWLHLPGDCEQ----GGPRWCWGDHAGCVAPGTWHPAMGPCSPGPLGNPEQ 90 100 110 120 130 140 390 FLJ002 RSLVEE FLJ000 HLSHPGRLWGQQPLRQHHLLLQVCVLP 150 160 170 >>KIAA1886 ( 655 res) fk01837 (655 aa) initn: 38 init1: 38 opt: 88 Z-score: 88.9 bits: 26.0 E(): 9.4 Smith-Waterman score: 105; 28.000% identity (53.000% similar) in 100 aa overlap (133-227:431-517) 110 120 130 140 150 160 FLJ002 VRLEAPAGMGEQLTETFALDTNTGSFLHTLEGPRFRASQCIY-AHRTLPHVLAFRVSIAR .:: .. . . :: .: :. . :: KIAA18 NSDYEEITIDPTCSWKPVPVKPDMHIKEEPDGPALKRCRTVSPAHVLMPSVMEM---IAA 410 420 430 440 450 170 180 190 200 210 FLJ002 LAPGSGPITLLLRSAFSPESPDLDLHQGPDF--QGARYLYGHTLTPEQ--PGGPQQEVHM :.::..: :.: .: .. :. ::. .: : ::. : :. . KIAA18 LGPGAAP--------FAPLQPP-SVPAPSDYPGQGSSFL-GPGTFPESFPPTMPSTPTLA 460 470 480 490 500 220 230 240 250 260 270 FLJ002 LWTPAPPDLTLGEGEEARTWDFLTAVGGSQAEAQACLTEALQLQARGALYTAHAQAWAQL .::.:: .. KIAA18 EFTPGPPPISYQSDIPSSLLTSEKSTACLPSQMAPAGHLDPTHNPGTPGLHTSNLGAPPG 510 520 530 540 550 560 >>KIAA1717 ( 420 res) pf00208 (420 aa) initn: 70 init1: 42 opt: 86 Z-score: 88.7 bits: 25.3 E(): 9.6 Smith-Waterman score: 86; 25.893% identity (52.679% similar) in 112 aa overlap (64-168:294-401) 40 50 60 70 80 90 FLJ002 LRPSSSMEDAGEDPTTFAAHSLPSDPRLLATVTNAYLGTRVFHDTLHVSG-VYNGA--GG :: . : :.:. :. . . :: . KIAA17 PYESERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSL 270 280 290 300 310 320 100 110 120 130 140 FLJ002 DTHRAM-LPSPLNVRLEAPAGMGEQLTETFALDTNTGSFLHTLEGPRFRASQCIYAHRTL : . .. .: : : . :..:.. ...:. . :.: ::: .:: . :.. KIAA17 DEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVH----PRFGPIKCIRTLRAV 330 340 350 360 370 150 160 170 180 190 200 FLJ002 PHVLAFRVSIA--RLAPG-SGPITLLLRSAFSPESPDLDLHQGPDFQGARYLYGHTLTPE . :. . . :: ::: KIAA17 EADEELTVAYGYDHSPPGKSGPEAPEWYQVELKAFQATQQK 380 390 400 410 420 393 residues in 1 query sequences 2210601 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:45:45 2009 done: Fri Feb 27 10:45:45 2009 Total Scan time: 0.510 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]