# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -H -O./tmp/sj06637.fasta.huge -Q ../query/FLJ00231.ptfa ./tmplib.10216 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 FLJ00231, 354 aa vs ./tmplib.10216 library 2210640 residues in 2457 sequences Expectation_n fit: rho(ln(x))= 4.6986+/-0.00406; mu= 16.0022+/- 0.274 mean_var=98.8061+/-22.268, 0's: 0 Z-trim: 1 B-trim: 24 in 1/39 Lambda= 0.129028 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2457) KIAA1691 ( 558 res) fj00597s1 ( 558) 1889 361.5 7.1e-101 KIAA1994 ( 1117 res) bh00052 (1117) 106 30.0 0.88 FLJ00190 ( 521 res) sj02368 ( 521) 98 28.1 1.6 KIAA1690 ( 482 res) fh27434 ( 482) 93 27.1 2.8 KIAA0418 ( 989 res) hh00988 ( 989) 96 28.1 3 KIAA0454 ( 2296 res) bf02274 (2296) 97 28.8 4.4 KIAA1477 ( 870 res) fj04927 ( 870) 91 27.1 5.2 KIAA1343 ( 520 res) fj00420 ( 520) 88 26.3 5.6 KIAA0019 ( 838 res) ha00537 ( 838) 88 26.5 7.5 KIAA1462 ( 1363 res) ef00562 (1363) 89 27.0 8.9 KIAA1300 ( 1820 res) fg06819 (1820) 90 27.3 9.3 FLJ00386 ( 811 res) sj04204 ( 811) 86 26.1 9.6 KIAA0464 ( 586 res) hg01093(revised) ( 586) 84 25.6 10 FLJ00324 ( 376 res) sj01157 ( 376) 81 24.8 11 KIAA1666 ( 1003 res) fg02554 (1003) 84 25.9 14 KIAA1602 ( 1003 res) fj10252 (1003) 84 25.9 14 KIAA1297 ( 2242 res) fg03883 (2242) 87 26.9 16 KIAA0293 ( 1505 res) hg03205 (1505) 85 26.3 16 FLJ00017 ( 291 res) as00017 ( 291) 77 23.9 16 KIAA0910 ( 1315 res) hg02207s1 (1315) 84 26.0 17 KIAA1927 ( 1325 res) hj03131 (1325) 84 26.0 17 FLJ00051 ( 462 res) as00051 ( 462) 78 24.3 19 FLJ00073 ( 462 res) as00073 ( 462) 78 24.3 19 KIAA1895 ( 628 res) fk05638 ( 628) 77 24.3 26 KIAA1086 ( 902 res) hj08218 ( 902) 78 24.7 28 KIAA1139 ( 1124 res) hk00330 (1124) 79 25.0 29 KIAA1572 ( 492 res) fh23424 ( 492) 75 23.8 29 KIAA0156 ( 963 res) ha03253 ( 963) 78 24.7 30 KIAA0403 ( 416 res) hg01159 ( 416) 74 23.5 30 FLJ00055 ( 977 res) as00055 ( 977) 78 24.8 30 KIAA0300 ( 2847 res) hf00389s1 (2847) 83 26.3 30 KIAA0859 ( 707 res) hk06485s1 ( 707) 76 24.2 32 KIAA1420 ( 1349 res) hk03917(revised) (1349) 79 25.1 32 KIAA1569 ( 1140 res) fh22407 (1140) 78 24.8 33 FLJ00093 ( 977 res) as00093 ( 977) 77 24.6 34 KIAA1029 ( 1015 res) fh00363 (1015) 77 24.6 35 KIAA0181 ( 2079 res) ha02522s1 (2079) 80 25.6 36 FLJ00020 ( 1142 res) as00020 (1142) 77 24.7 37 KIAA1993 ( 532 res) bg00180 ( 532) 73 23.5 39 KIAA1206 ( 1912 res) fg04331 (1912) 79 25.3 39 FLJ00308 ( 233 res) sh05935 ( 233) 69 22.3 40 KIAA1217 ( 1339 res) fh03001s1 (1339) 77 24.7 41 KIAA0595 ( 1666 res) hj02929s1 (1666) 78 25.1 41 KIAA1506 ( 3309 res) ff04330 (3309) 81 26.0 42 KIAA1461 ( 1498 res) fh17578 (1498) 77 24.8 44 KIAA1861 ( 979 res) fk12955 ( 979) 75 24.2 44 KIAA0810 ( 824 res) hk05647s1 ( 824) 74 23.9 45 FLJ00226 ( 1046 res) sj06303 (1046) 75 24.2 46 KIAA0079 ( 1102 res) ha03543 (1102) 75 24.3 47 FLJ00105 ( 721 res) as00105 ( 721) 73 23.6 47 >>KIAA1691 ( 558 res) fj00597s1 (558 aa) initn: 2340 init1: 1889 opt: 1889 Z-score: 1904.4 bits: 361.5 E(): 7.1e-101 Smith-Waterman score: 2280; 91.192% identity (91.451% similar) in 386 aa overlap (1-354:173-558) 10 20 30 FLJ002 DTAVGLNHTAEPSLQTLERQLAGRPEPLRA :::::::::::::::::::::::::::::: KIAA16 NGETSDGIHRATYSLRHANRTVAGVQDRVWDTAVGLNHTAEPSLQTLERQLAGRPEPLRA 150 160 170 180 190 200 40 50 60 70 FLJ002 VKRLQGLLETLLGYTAAIPFWRNTAVSLEVLAEQVDLYDWYR------------------ :.:::::::::::::::::::::::::::::::::::::::: KIAA16 VQRLQGLLETLLGYTAAIPFWRNTAVSLEVLAEQVDLYDWYRWLGYLGLLLLDVIICLLV 210 220 230 240 250 260 80 90 100 110 FLJ002 --------------VCLLGVLALVISWGALGLELAVSVGSSDFCVDPDAYVTKMVEEYSV :::::::::::::::::::::::::::::::::::::::::::::: KIAA16 LVGLIRSSKGILVGVCLLGVLALVISWGALGLELAVSVGSSDFCVDPDAYVTKMVEEYSV 270 280 290 300 310 320 120 130 140 150 160 170 FLJ002 LSGDILQYYLACSPRAANPFQQKLSGSHKALVEMQDVVAELLRTVPWEQPATKDPLLRVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 LSGDILQYYLACSPRAANPFQQKLSGSHKALVEMQDVVAELLRTVPWEQPATKDPLLRVQ 330 340 350 360 370 380 180 190 200 210 220 230 FLJ002 EVLNGTEVNLQHLTALVDCRSLHLDYVQALTGFCYDGVEGLIYLALFSFVTALMFSSIVC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 EVLNGTEVNLQHLTALVDCRSLHLDYVQALTGFCYDGVEGLIYLALFSFVTALMFSSIVC 390 400 410 420 430 440 240 250 260 270 280 290 FLJ002 SVPHTWQQKRGPDEDGEEEAAPGPRQAHDSLYRVHMPSLYSCGSSYGSETSIPAAAHTVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: KIAA16 SVPHTWQQKRGPDEDGEEEAAPGPRQAHDSLYRVHMPSLYSCGSSYGSETSIPAAAHTVS 450 460 470 480 490 500 300 310 320 330 340 350 FLJ002 NAPVTEYMSQNANFQNPRCENTPLIGRESPPPSYTSSMRAKYLATSQPRPDSRGSH :::::::::::::::::::::::::::::::::::::::::::::::::::: ::: KIAA16 NAPVTEYMSQNANFQNPRCENTPLIGRESPPPSYTSSMRAKYLATSQPRPDSSGSH 510 520 530 540 550 >>KIAA1994 ( 1117 res) bh00052 (1117 aa) initn: 58 init1: 58 opt: 106 Z-score: 107.4 bits: 30.0 E(): 0.88 Smith-Waterman score: 106; 25.532% identity (49.645% similar) in 141 aa overlap (210-346:6-141) 180 190 200 210 220 230 FLJ002 VLNGTEVNLQHLTALVDCRSLHLDYVQALTGFCYDGVEGLIYLALFSF--VTALMFSSIV :. :. : ..:. : .:. ..: KIAA19 GGGEGGIAPGGASGPVFLSGVSNTKITVQKEIALV 10 20 30 240 250 260 270 280 290 FLJ002 CSVPHTWQQKRGPDEDGEEEAAPGPRQAHDSLYRVHMPSLYSC-GSSYGSETSIPAAAHT :.: . . . : :. :: : : .. :... ::. :: ... ::. KIAA19 SSAPPVPNTMHQPPESTAAAAAA----ADISARKMAHPAMFPRRGSGSGSASALNAAGTG 40 50 60 70 80 90 300 310 320 330 340 350 FLJ002 V-SNAPVTEYMSQNANFQNPRCENTPLIGRESPPPSYTSSMRAKYLATSQPRPDSRGSH : ::: .: . . .: : . : . :::. . . : .:: KIAA19 VGSNATSSEDFPPPSLLQPPPPAASSTSGPQPPPPQSLNLLSQAQLQ-AQPLAPGGTQMK 100 110 120 130 140 150 KIAA19 KKSGFQITSVTPAQISASISSNNSIAEDTESYDDLDESHTEDLSSSEILDVSLSRATDLG 160 170 180 190 200 210 >>FLJ00190 ( 521 res) sj02368 (521 aa) initn: 66 init1: 66 opt: 98 Z-score: 102.9 bits: 28.1 E(): 1.6 Smith-Waterman score: 98; 25.472% identity (55.660% similar) in 106 aa overlap (248-352:415-512) 220 230 240 250 260 270 FLJ002 GLIYLALFSFVTALMFSSIVCSVPHTWQQKRGPDEDGEEEAAPGPRQAHDSLYRVHMPSL .:: ::..:. : :. ..:: . ..: FLJ001 DSSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDGHQESLPPPEFSKDSGFLEELPE- 390 400 410 420 430 440 280 290 300 310 320 330 FLJ002 YSCGSSYGSETSIPAAAHTVSNAPVTEYMSQNANFQNPRC-ENTPLIGRESPPPSYTSSM . ::... ..: . : ..: . :. .: : :..: .:. .: FLJ001 -DNLSSWATWGTLPPEPNLVPGGPPVSL--QTLTF----CWESSPEEEEEARESEIEDSD 450 460 470 480 490 340 350 FLJ002 RAKYLATSQPRPDSRGSH ... : : : ..:: FLJ001 AGSWGAESTQRTEDRGRTLGHYMAR 500 510 520 >>KIAA1690 ( 482 res) fh27434 (482 aa) initn: 68 init1: 68 opt: 93 Z-score: 98.3 bits: 27.1 E(): 2.8 Smith-Waterman score: 93; 22.314% identity (48.760% similar) in 121 aa overlap (232-348:44-162) 210 220 230 240 250 260 FLJ002 LDYVQALTGFCYDGVEGLIYLALFSFVTALMFSSIVCSVPHTWQQKRGPDEDGEEEAAPG : .. :. :: :. :: : . KIAA16 ALTEALAFAIQEPSPRESLQVLPSGTPPGTMVTAPHSSTRHTSVVMLTPNPDGPPSQAAA 20 30 40 50 60 70 270 280 290 300 310 FLJ002 PRQAHDSLYRVHMPSLYSCGSSYGSETSIPAAAHTVSNAPVTEYMSQNANFQN--PRCEN : . . : :. :. .. .. : . ..:..:. :. ... . :: . KIAA16 PMATLTPRAEGHPPT--HTISTIAATVTAPHSESSLSTGPAPAAMATTSSKPEGRPRGQA 80 90 100 110 120 130 320 330 340 350 FLJ002 TPLIGRESPPPSYTSSMRAKYLATSQ--PRPDSRGSH .: : .:: . . : .:.. ::: KIAA16 APTILLTKPPGATSRPTTAPPRTTTRRPPRPPGSSRKGAGNSSRPVPPAPGGHSRSKEGQ 140 150 160 170 180 190 KIAA16 RGRNPSSTPLGQKRPLGKIFQIYKGNFTGSVEPEPSTLTPRTPLWGYSSSPQPQTVAATT 200 210 220 230 240 250 >>KIAA0418 ( 989 res) hh00988 (989 aa) initn: 40 init1: 40 opt: 96 Z-score: 97.9 bits: 28.1 E(): 3 Smith-Waterman score: 97; 25.234% identity (54.206% similar) in 107 aa overlap (247-350:215-304) 220 230 240 250 260 270 FLJ002 EGLIYLALFSFVTALMFSSIVCSVPHTWQQKRGPDEDGEEEAAPGPRQAHDSLYRVHMPS :. : .:: . :: .. .. .: KIAA04 TRKKNLAGPVEIIGNIMEISNLLNKKASGDKETPPAEGEGHEAPIAKK------EISLPI 190 200 210 220 230 280 290 300 310 320 330 FLJ002 LYSCGSSYGSETSIP--AAAHTVSNAP-VTEYMSQNANFQNPRCENTPLIGRESPPPSYT : :..: :: ...: .... ....: :.. : :....: : ::: KIAA04 L--CNASNGSAVGVPDRTVSRLAQGSPAVARIAPQRAQISSPNL-------RTRPPPRRE 240 250 260 270 280 340 350 FLJ002 SSMRAKYLATSQPRPDSRGSH ::. . . :.: : KIAA04 SSL--GFQLPKPPEPPSVEVEYYTIAEFQSCISDGISFRGGQKAEVIDKNSGGWWYVQIG 290 300 310 320 330 340 >>KIAA0454 ( 2296 res) bf02274 (2296 aa) initn: 82 init1: 50 opt: 97 Z-score: 94.9 bits: 28.8 E(): 4.4 Smith-Waterman score: 103; 23.009% identity (47.788% similar) in 339 aa overlap (28-353:1444-1743) 10 20 30 40 50 FLJ002 DTAVGLNHTAEPSLQTLERQLAGRPEPLRAVKRLQGLLETLLGYTAAIPFWRNTAVS :.: : :..:.. . : .: .: KIAA04 GTLEGSSPHSVPDEDEGWLSDGTGAFYSPGLQAKKDLESLIQRVSQLEAQLP--KNGL-- 1420 1430 1440 1450 1460 60 70 80 90 100 110 FLJ002 LEVLAEQVDLYDW--YRVCLLGVLALVISWGALGLELAVSVGSSDFCVDPDAYVTKMVEE : :::.. .: :. : .:. :. . : . .: .. :. KIAA04 EEKLAEELRSASWPGKYDSLIQDQARELSY----LRQKIREGRG-ICYLITRHAKDTVKS 1470 1480 1490 1500 1510 1520 120 130 140 150 160 170 FLJ002 Y-SVLSGDILQYYLACSPRAANPFQQKLSGSHKALVEMQDVVAELLRTVPWEQPATKDPL . ..: .. ..:::. : : ..:. . . .: .: .. : .:: KIAA04 FEDLLRSNDIDYYLGQSFREQLAQGSQLTERLTSKLSTKDHKSE-------KDQAGLEPL 1530 1540 1550 1560 1570 180 190 200 210 220 230 FLJ002 -LRVQEVLNGTEVNLQHLTALVDCRSLHLDYVQALTGFCYDGVEGLIYLALFSFVTALMF ::... :. : .. : : .: ::: . .::. . . . .:. . . : KIAA04 ALRLSRELQEKEKVIEVLQAKLDARSLTPSSSHALSD-SHRSPSSTSFLS--DELEACSD 1580 1590 1600 1610 1620 1630 240 250 260 270 280 290 FLJ002 SSIVCSVPHTWQQKRGPDEDGEEEAAPGPRQAHDSLYRVHMPSLYSCGSSYGSETSIPAA .:: : ..: .:... :: .: : . :: : :: . KIAA04 MDIVSEYTHYEEKKASPSHS-------------DS---IHHSSHSAVLSSKPSSTSASQG 1640 1650 1660 1670 300 310 320 330 340 FLJ002 AHTVSNA-PVTEYMSQNANFQNPRCENTPLIGRESPPPSYTSSMRAK--------YLATS :.. ::. :.. ::. :. : : . ::. :... .. :: .. KIAA04 AKAESNSNPISLPTPQNT----PKEANQAHSGASTVPPASTATLLSNDLEADSSYYLNSA 1680 1690 1700 1710 1720 1730 350 FLJ002 QPRPDSRGSH ::. ::. KIAA04 QPHSPPRGTIELGRILEPGYLGSSGKWDVMRPQKGSVSGDLSSGSSVYQLNSKPTGADLL 1740 1750 1760 1770 1780 1790 >>KIAA1477 ( 870 res) fj04927 (870 aa) initn: 67 init1: 42 opt: 91 Z-score: 93.5 bits: 27.1 E(): 5.2 Smith-Waterman score: 91; 25.263% identity (48.421% similar) in 95 aa overlap (237-329:81-167) 210 220 230 240 250 260 FLJ002 ALTGFCYDGVEGLIYLALFSFVTALMFSSIVCSVPHTWQ-QKRGPDEDGEEEAAPGPRQA .:: :: . ::: .. :. :: KIAA14 SSSSASSSLFPPPGPLVAPPRGLREPLAPALCSRPHPFPVAPRGPHHSPAGETPARPRCP 60 70 80 90 100 110 270 280 290 300 310 320 FLJ002 HDSLYRVHMPSLYSCGSSYGSETSIPAAAHTVSNAPVTEYMSQNANFQN-PRCENTPLIG : :. .:.. . .:. . ..: . :. :. :: :::.:. . KIAA14 HKMSARTPLPTV----NERDTENHTSVDGYTEPHIQPTKSSSR----QNIPRCRNSITSA 120 130 140 150 160 330 340 350 FLJ002 RESPPPSYTSSMRAKYLATSQPRPDSRGSH . : KIAA14 TDEQPHIGNYRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQLNPTSLQKLFREVRI 170 180 190 200 210 220 >>KIAA1343 ( 520 res) fj00420 (520 aa) initn: 79 init1: 49 opt: 88 Z-score: 92.9 bits: 26.3 E(): 5.6 Smith-Waterman score: 89; 25.373% identity (56.716% similar) in 67 aa overlap (282-348:377-441) 260 270 280 290 300 310 FLJ002 EDGEEEAAPGPRQAHDSLYRVHMPSLYSCGSSYGSETSIPAAAHTVSNAPVTEYMSQNAN .: :. ... ....::.: . ... . KIAA13 GQVKNFFVNYRRRFNLEEVLQEWEAEQGTQASNGDASTLGEETKSASNVPSGKSTDEEEE 350 360 370 380 390 400 320 330 340 350 FLJ002 FQNPRCENTPLIGRESPPPSYTSSMRAKYLATSQPRPDSRGSH :.:. : .: : :: : . : . .:: : KIAA13 AQTPQAPRT--LGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQA 410 420 430 440 450 460 KIAA13 RFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLSTVGGQQPPSLIGIQTDSQSSLH 470 480 490 500 510 520 >>KIAA0019 ( 838 res) ha00537 (838 aa) initn: 78 init1: 50 opt: 88 Z-score: 90.6 bits: 26.5 E(): 7.5 Smith-Waterman score: 88; 28.866% identity (50.515% similar) in 97 aa overlap (260-351:530-624) 230 240 250 260 270 280 FLJ002 ALMFSSIVCSVPHTWQQKRGPDEDGEEEAAPGPRQAHDSLYRVHMPSLYSCGSSYGSETS ::: ... : : .: .: . .. :: .: KIAA00 PSDVSATERTAKYTMEGKGRAAHPALAVTVPGPAEVRVSNVRPKMKALDAEDGKRGSTAS 500 510 520 530 540 550 290 300 310 320 330 340 FLJ002 ----IPAAAHTVSNAPVTEYMSQNANFQNPRCENTPLIGRESPPPSYT-SSMRAKYLATS .:. :.: : : . . : :.:: : :. :: . :.. :. KIAA00 QYDNVPGPELD-SGASVEEAL-ERAYSQSPRHALYPPSPRKHAEPSSSPSKVSNKFTFKV 560 570 580 590 600 610 350 FLJ002 QPRPDSRGSH :: .: KIAA00 QPPSHARYPSQLDGEARGLAHPPSYSNPPVYHGNSPKHFPTANSSFASPQFSPGTQLNPS 620 630 640 650 660 670 >>KIAA1462 ( 1363 res) ef00562 (1363 aa) initn: 120 init1: 74 opt: 89 Z-score: 89.3 bits: 27.0 E(): 8.9 Smith-Waterman score: 89; 27.273% identity (42.727% similar) in 110 aa overlap (250-351:217-321) 220 230 240 250 260 270 FLJ002 IYLALFSFVTALMFSSIVCSVPHTWQQKRGPDEDGEEEAAPGPRQAHDSLYRVHMPSLYS : .::. . :: :: : : KIAA14 NVSLESWNQPRKLGRQMSDGDGERLFQDLYPFIQGEHVLNSQNKGKSRSLPRVLSPESLS 190 200 210 220 230 240 280 290 300 310 320 330 FLJ002 CGSSYGSETSIPAAA-HTVSNAPVTEYMSQNA----NFQNPRCENT---PLIGRESPPPS : .: :: :. . : . : : .. : : .:: ::: KIAA14 C-----TEIPIPLNERHSPKMPPYPPTCAPNLDSTRNSEKSGCSAPFPRPKFGRPLKPPS 250 260 270 280 290 300 340 350 FLJ002 YTSSMRAKYLATSQPRPDSRGSH :.: .... : :. ::. KIAA14 YSSHQQSRGGADSSDSQDSQQMDAYVPRHELCLSDPGLEPPVYVPPPSYRSPPQNIPNPY 310 320 330 340 350 360 354 residues in 1 query sequences 2210640 residues in 2457 library sequences Tcomplib [34.26] (2 proc) start: Fri Feb 27 10:45:47 2009 done: Fri Feb 27 10:45:47 2009 Total Scan time: 0.490 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]